Wall clock time and date at job start Sun Mar 29 2020 21:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47524 * 2 1 4 4 C 1.53000 * 109.47060 * 240.00127 * 2 1 3 5 5 C 1.53004 * 109.47410 * 175.00149 * 4 2 1 6 6 C 1.50697 * 109.47506 * 179.97438 * 5 4 2 7 7 H 1.08002 * 120.00072 * 359.97438 * 6 5 4 8 8 C 1.37873 * 120.00081 * 179.97438 * 6 5 4 9 9 N 1.31516 * 120.00171 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 119.99998 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.47187 * 90.00465 * 10 8 6 12 12 H 1.48501 * 109.47360 * 209.99910 * 10 8 6 13 13 H 1.48507 * 109.47374 * 330.00144 * 10 8 6 14 14 N 1.46902 * 109.47083 * 120.00512 * 2 1 3 15 15 C 1.46906 * 110.99573 * 274.99770 * 14 2 1 16 16 C 1.54264 * 110.03085 * 272.16524 * 15 14 2 17 17 C 1.54889 * 104.19796 * 217.10477 * 16 15 14 18 18 C 1.54891 * 102.74377 * 37.94448 * 17 16 15 19 19 C 1.53871 * 110.03224 * 155.00203 * 15 14 2 20 20 H 1.09003 * 109.46954 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47023 * 299.99973 * 1 2 3 22 22 H 1.09004 * 109.46766 * 59.99858 * 1 2 3 23 23 H 1.08997 * 109.47474 * 294.99907 * 4 2 1 24 24 H 1.08999 * 109.47164 * 55.00102 * 4 2 1 25 25 H 1.09005 * 109.46821 * 300.00014 * 5 4 2 26 26 H 1.08999 * 109.46996 * 59.99850 * 5 4 2 27 27 H 0.97000 * 120.00180 * 180.02562 * 9 8 6 28 28 H 1.00896 * 111.00219 * 38.95409 * 14 2 1 29 29 H 1.09001 * 110.01477 * 33.60857 * 15 14 2 30 30 H 1.08997 * 110.49318 * 335.78927 * 16 15 14 31 31 H 1.09001 * 110.48476 * 98.42991 * 16 15 14 32 32 H 1.09001 * 110.75929 * 279.63390 * 17 16 15 33 33 H 1.08995 * 110.75901 * 156.25759 * 17 16 15 34 34 H 1.09003 * 110.48385 * 203.38029 * 18 17 16 35 35 H 1.08998 * 110.59890 * 80.79481 * 18 17 16 36 36 H 1.08995 * 110.03133 * 238.57308 * 19 15 14 37 37 H 1.09007 * 110.03168 * 359.97438 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6133 -1.3138 6 6 4.0672 -1.3242 -2.5439 7 1 3.3688 -1.8053 -3.2126 8 6 5.4184 -1.3605 -2.8156 9 7 6.2690 -0.7751 -2.0010 10 14 6.0412 -2.2423 -4.3400 11 1 6.0906 -1.2892 -5.4777 12 1 7.4028 -2.7758 -4.0818 13 1 5.1253 -3.3631 -4.6726 14 7 2.0197 -0.6926 1.1994 15 6 2.0825 0.2225 2.3469 16 6 3.4467 0.9422 2.3748 17 6 3.7915 1.0444 3.8813 18 6 3.2815 -0.3068 4.4411 19 6 1.9775 -0.5716 3.6607 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 1.7517 -1.7715 -1.2057 24 1 1.6054 -0.2617 -2.1370 25 1 3.8532 0.4370 -1.3574 26 1 3.9995 -1.0729 -0.4261 27 1 7.2196 -0.8003 -2.1924 28 1 1.4496 -1.4980 1.4099 29 1 1.2754 0.9527 2.2864 30 1 4.1993 0.3536 1.8502 31 1 3.3629 1.9357 1.9343 32 1 3.2624 1.8781 4.3430 33 1 4.8675 1.1409 4.0257 34 1 3.0773 -0.2247 5.5086 35 1 4.0067 -1.0983 4.2521 36 1 1.1200 -0.2263 4.2382 37 1 1.8795 -1.6360 3.4468 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172475845.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:51 Heat of formation + Delta-G solvation = -33.352329 kcal Electronic energy + Delta-G solvation = -14398.421638 eV Core-core repulsion = 12174.088358 eV Total energy + Delta-G solvation = -2224.333280 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.51561 -35.80649 -32.96828 -30.82458 -28.92119 -28.45576 -26.01182 -24.86513 -21.36681 -20.58898 -19.64903 -19.46275 -16.11529 -15.86033 -15.26793 -14.45363 -14.25816 -14.11775 -13.19420 -13.06136 -12.72585 -12.33594 -12.17852 -11.60015 -11.16852 -11.10451 -10.94865 -10.85801 -10.79690 -10.62365 -10.56552 -10.39620 -10.32563 -10.04605 -9.56600 -9.15036 -8.84079 -8.19022 -7.76531 -5.84574 -3.85374 3.39449 3.45429 3.49036 4.57322 4.59086 4.78491 4.89073 5.13895 5.42540 5.50774 5.57081 5.61553 5.71999 5.73988 5.75279 5.85995 5.94198 6.05831 6.11141 6.16465 6.27171 6.32286 6.37402 6.47409 6.52469 6.76041 6.83680 6.96814 7.38510 7.67456 7.89285 7.94259 8.13654 8.28986 8.62576 9.23779 9.76889 11.26418 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.032407 B = 0.007420 C = 0.006396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.798897 B = 3772.857774 C = 4376.424708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.083 3.917 3 H 0.070 0.930 4 C -0.098 4.098 5 C 0.031 3.969 6 C -0.518 4.518 7 H 0.050 0.950 8 C 0.056 3.944 9 N -0.894 5.894 10 Si 0.886 3.114 11 H -0.283 1.283 12 H -0.288 1.288 13 H -0.275 1.275 14 N -0.665 5.665 15 C 0.084 3.916 16 C -0.116 4.116 17 C -0.124 4.124 18 C -0.119 4.119 19 C -0.125 4.125 20 H 0.052 0.948 21 H 0.042 0.958 22 H 0.057 0.943 23 H 0.045 0.955 24 H 0.044 0.956 25 H 0.006 0.994 26 H 0.033 0.967 27 H 0.257 0.743 28 H 0.333 0.667 29 H 0.038 0.962 30 H 0.089 0.911 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.057 0.943 35 H 0.068 0.932 36 H 0.057 0.943 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.931 2.432 10.904 14.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.027 4.027 3 H 0.089 0.911 4 C -0.136 4.136 5 C -0.006 4.006 6 C -0.556 4.556 7 H 0.068 0.932 8 C -0.144 4.144 9 N -0.534 5.534 10 Si 0.715 3.285 11 H -0.209 1.209 12 H -0.214 1.214 13 H -0.200 1.200 14 N -0.296 5.296 15 C -0.026 4.026 16 C -0.154 4.154 17 C -0.162 4.162 18 C -0.157 4.157 19 C -0.163 4.163 20 H 0.071 0.929 21 H 0.061 0.939 22 H 0.076 0.924 23 H 0.064 0.936 24 H 0.063 0.937 25 H 0.024 0.976 26 H 0.051 0.949 27 H 0.067 0.933 28 H 0.151 0.849 29 H 0.056 0.944 30 H 0.107 0.893 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.086 2.535 10.760 13.697 hybrid contribution -0.581 -0.340 -0.700 0.972 sum -8.668 2.195 10.060 13.459 Atomic orbital electron populations 1.22541 0.98831 1.01407 1.01096 1.21759 0.90709 0.98364 0.91838 0.91143 1.21622 1.00638 0.98292 0.93074 1.18983 0.88290 0.96397 0.96942 1.21369 0.91842 1.33924 1.08499 0.93181 1.24992 0.97141 0.95834 0.96473 1.69979 1.02105 1.44512 1.36837 0.86693 0.78112 0.80003 0.83735 1.20883 1.21353 1.20043 1.60710 1.57390 1.08637 1.02889 1.22147 0.96898 0.93803 0.89728 1.22461 0.97592 0.99949 0.95371 1.22475 1.00580 0.96806 0.96366 1.22275 0.97108 0.97983 0.98345 1.22335 0.97704 1.00479 0.95797 0.92864 0.93859 0.92398 0.93586 0.93715 0.97555 0.94886 0.93308 0.84880 0.94450 0.89251 0.92539 0.92297 0.91683 0.92437 0.91317 0.92434 0.91279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.54 9.15 37.16 0.34 -2.20 16 2 C 0.08 1.44 2.43 -67.71 -0.16 1.28 16 3 H 0.07 1.30 7.77 -51.93 -0.40 0.90 16 4 C -0.10 -2.09 4.83 -26.73 -0.13 -2.22 16 5 C 0.03 0.83 4.86 -27.88 -0.14 0.69 16 6 C -0.52 -15.21 9.11 -34.44 -0.31 -15.53 16 7 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 8 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 9 N -0.89 -27.67 13.29 55.43 0.74 -26.94 16 10 Si 0.89 22.32 29.54 -169.99 -5.02 17.30 16 11 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 13 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 14 N -0.67 -11.07 5.47 -98.57 -0.54 -11.61 16 15 C 0.08 1.22 3.03 -66.59 -0.20 1.02 16 16 C -0.12 -1.81 6.40 -25.07 -0.16 -1.97 16 17 C -0.12 -1.58 6.91 -24.74 -0.17 -1.76 16 18 C -0.12 -1.44 6.83 -25.07 -0.17 -1.61 16 19 C -0.13 -1.54 6.48 -25.62 -0.17 -1.70 16 20 H 0.05 0.72 8.13 -51.93 -0.42 0.29 16 21 H 0.04 0.55 7.46 -51.93 -0.39 0.17 16 22 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 24 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 25 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 26 H 0.03 0.94 7.75 -51.93 -0.40 0.54 16 27 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 28 H 0.33 5.04 7.75 -39.29 -0.30 4.73 16 29 H 0.04 0.53 7.16 -51.93 -0.37 0.16 16 30 H 0.09 1.71 8.05 -51.93 -0.42 1.29 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.85 7.47 -51.92 -0.39 0.46 16 LS Contribution 294.11 15.07 4.43 4.43 Total: -1.00 -30.51 294.11 -8.63 -39.14 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -6.87 Total: 0.10 kcal Atomic # 6 Polarization: -21.05 SS G_CDS: -1.37 Total: -22.42 kcal Atomic # 7 Polarization: -38.74 SS G_CDS: 0.20 Total: -38.54 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.51 -8.63 -39.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172475845.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.785 kcal (2) G-P(sol) polarization free energy of solvation -30.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds