Wall clock time and date at job start Sun Mar 29 2020 21:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47524 * 2 1 4 4 C 1.53000 * 109.47060 * 240.00127 * 2 1 3 5 5 C 1.53004 * 109.47410 * 175.00149 * 4 2 1 6 6 C 1.50697 * 109.47506 * 179.97438 * 5 4 2 7 7 H 1.08002 * 120.00072 * 359.97438 * 6 5 4 8 8 C 1.37873 * 120.00081 * 179.97438 * 6 5 4 9 9 N 1.31516 * 120.00171 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 119.99998 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.47187 * 90.00465 * 10 8 6 12 12 H 1.48501 * 109.47360 * 209.99910 * 10 8 6 13 13 H 1.48507 * 109.47374 * 330.00144 * 10 8 6 14 14 N 1.46902 * 109.47083 * 120.00512 * 2 1 3 15 15 C 1.46906 * 110.99573 * 274.99770 * 14 2 1 16 16 C 1.54264 * 110.03085 * 272.16524 * 15 14 2 17 17 C 1.54889 * 104.19796 * 217.10477 * 16 15 14 18 18 C 1.54891 * 102.74377 * 37.94448 * 17 16 15 19 19 C 1.53871 * 110.03224 * 155.00203 * 15 14 2 20 20 H 1.09003 * 109.46954 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47023 * 299.99973 * 1 2 3 22 22 H 1.09004 * 109.46766 * 59.99858 * 1 2 3 23 23 H 1.08997 * 109.47474 * 294.99907 * 4 2 1 24 24 H 1.08999 * 109.47164 * 55.00102 * 4 2 1 25 25 H 1.09005 * 109.46821 * 300.00014 * 5 4 2 26 26 H 1.08999 * 109.46996 * 59.99850 * 5 4 2 27 27 H 0.97000 * 120.00180 * 180.02562 * 9 8 6 28 28 H 1.00896 * 111.00219 * 38.95409 * 14 2 1 29 29 H 1.09001 * 110.01477 * 33.60857 * 15 14 2 30 30 H 1.08997 * 110.49318 * 335.78927 * 16 15 14 31 31 H 1.09001 * 110.48476 * 98.42991 * 16 15 14 32 32 H 1.09001 * 110.75929 * 279.63390 * 17 16 15 33 33 H 1.08995 * 110.75901 * 156.25759 * 17 16 15 34 34 H 1.09003 * 110.48385 * 203.38029 * 18 17 16 35 35 H 1.08998 * 110.59890 * 80.79481 * 18 17 16 36 36 H 1.08995 * 110.03133 * 238.57308 * 19 15 14 37 37 H 1.09007 * 110.03168 * 359.97438 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6133 -1.3138 6 6 4.0672 -1.3242 -2.5439 7 1 3.3688 -1.8053 -3.2126 8 6 5.4184 -1.3605 -2.8156 9 7 6.2690 -0.7751 -2.0010 10 14 6.0412 -2.2423 -4.3400 11 1 6.0906 -1.2892 -5.4777 12 1 7.4028 -2.7758 -4.0818 13 1 5.1253 -3.3631 -4.6726 14 7 2.0197 -0.6926 1.1994 15 6 2.0825 0.2225 2.3469 16 6 3.4467 0.9422 2.3748 17 6 3.7915 1.0444 3.8813 18 6 3.2815 -0.3068 4.4411 19 6 1.9775 -0.5716 3.6607 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 1.7517 -1.7715 -1.2057 24 1 1.6054 -0.2617 -2.1370 25 1 3.8532 0.4370 -1.3574 26 1 3.9995 -1.0729 -0.4261 27 1 7.2196 -0.8003 -2.1924 28 1 1.4496 -1.4980 1.4099 29 1 1.2754 0.9527 2.2864 30 1 4.1993 0.3536 1.8502 31 1 3.3629 1.9357 1.9343 32 1 3.2624 1.8781 4.3430 33 1 4.8675 1.1409 4.0257 34 1 3.0773 -0.2247 5.5086 35 1 4.0067 -1.0983 4.2521 36 1 1.1200 -0.2263 4.2382 37 1 1.8795 -1.6360 3.4468 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172475845.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:51 Heat of formation + Delta-G solvation = -51.779647 kcal Electronic energy + Delta-G solvation = -14399.220707 eV Core-core repulsion = 12174.088358 eV Total energy + Delta-G solvation = -2225.132349 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.72776 -37.20727 -35.07741 -32.53037 -30.48331 -29.55166 -27.25865 -26.78153 -23.22202 -21.83669 -20.97609 -20.77134 -18.36468 -17.12104 -16.58182 -16.34674 -15.58220 -15.42698 -14.65480 -14.46843 -14.16052 -14.00783 -13.63700 -13.15047 -13.01794 -12.83864 -12.42571 -12.27397 -11.99032 -11.92805 -11.89191 -11.69789 -11.58192 -11.52229 -11.37991 -11.19364 -10.91952 -10.48349 -9.06382 -8.13229 -6.24072 1.39209 1.41264 1.52169 2.43714 3.18556 3.34403 3.70881 3.82051 4.06574 4.14980 4.33718 4.47750 4.51174 4.63263 4.65209 4.77775 4.82658 4.87030 4.94297 5.01404 5.04812 5.10616 5.12310 5.23846 5.28987 5.34766 5.38187 5.48861 5.56178 5.59964 5.90879 6.04358 6.34899 6.39928 6.73249 6.95966 7.43948 8.97923 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.032407 B = 0.007420 C = 0.006396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.798897 B = 3772.857774 C = 4376.424708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.090 3.910 3 H 0.054 0.946 4 C -0.089 4.089 5 C 0.042 3.958 6 C -0.544 4.544 7 H 0.055 0.945 8 C -0.002 4.002 9 N -0.932 5.932 10 Si 0.962 3.038 11 H -0.273 1.273 12 H -0.282 1.282 13 H -0.264 1.264 14 N -0.687 5.687 15 C 0.086 3.914 16 C -0.121 4.121 17 C -0.118 4.118 18 C -0.118 4.118 19 C -0.119 4.119 20 H 0.063 0.937 21 H 0.062 0.938 22 H 0.062 0.938 23 H 0.047 0.953 24 H 0.047 0.953 25 H -0.027 1.027 26 H 0.003 0.997 27 H 0.261 0.739 28 H 0.342 0.658 29 H 0.049 0.951 30 H 0.041 0.959 31 H 0.048 0.952 32 H 0.081 0.919 33 H 0.061 0.939 34 H 0.084 0.916 35 H 0.052 0.948 36 H 0.083 0.917 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.477 1.967 11.335 15.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.020 4.020 3 H 0.072 0.928 4 C -0.127 4.127 5 C 0.005 3.995 6 C -0.582 4.582 7 H 0.073 0.927 8 C -0.199 4.199 9 N -0.573 5.573 10 Si 0.787 3.213 11 H -0.198 1.198 12 H -0.208 1.208 13 H -0.188 1.188 14 N -0.319 5.319 15 C -0.024 4.024 16 C -0.159 4.159 17 C -0.156 4.156 18 C -0.156 4.156 19 C -0.157 4.157 20 H 0.082 0.918 21 H 0.081 0.919 22 H 0.081 0.919 23 H 0.066 0.934 24 H 0.066 0.934 25 H -0.009 1.009 26 H 0.021 0.979 27 H 0.069 0.931 28 H 0.162 0.838 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.100 0.900 33 H 0.080 0.920 34 H 0.103 0.897 35 H 0.071 0.929 36 H 0.102 0.898 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.652 2.067 11.196 14.926 hybrid contribution -0.047 -0.165 -0.829 0.847 sum -9.699 1.902 10.367 14.324 Atomic orbital electron populations 1.22381 0.95398 1.02487 1.02332 1.21518 0.93260 0.96689 0.90506 0.92812 1.21463 0.96602 0.99040 0.95576 1.18781 0.92149 0.93569 0.94964 1.21829 0.92557 1.34398 1.09461 0.92687 1.25972 0.97386 0.96536 1.00045 1.70132 1.02520 1.45681 1.38929 0.85499 0.77578 0.78965 0.79290 1.19807 1.20768 1.18814 1.60577 1.58191 1.09647 1.03508 1.22181 0.96101 0.93943 0.90166 1.22436 0.97415 0.98861 0.97230 1.22461 1.00837 0.98307 0.94002 1.22284 0.96616 0.96766 0.99914 1.22317 0.98724 1.00104 0.94556 0.91836 0.91919 0.91859 0.93421 0.93426 1.00875 0.97856 0.93077 0.83826 0.93271 0.94006 0.93294 0.90047 0.92000 0.89712 0.92885 0.89814 0.91350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.33 9.15 71.98 0.66 -3.67 16 2 C 0.09 3.13 2.43 44.91 0.11 3.24 16 3 H 0.05 2.03 7.77 -2.39 -0.02 2.01 16 4 C -0.09 -3.83 4.83 30.60 0.15 -3.69 16 5 C 0.04 2.38 4.86 29.85 0.15 2.52 16 6 C -0.54 -32.68 9.11 25.60 0.23 -32.45 16 7 H 0.05 3.17 7.74 -2.91 -0.02 3.15 16 8 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 9 N -0.93 -59.36 13.29 21.45 0.28 -59.08 16 10 Si 0.96 46.11 29.54 68.60 2.03 48.13 16 11 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 12 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 13 H -0.26 -12.07 7.11 99.48 0.71 -11.36 16 14 N -0.69 -22.89 5.47 -465.77 -2.55 -25.44 16 15 C 0.09 2.42 3.03 45.64 0.14 2.56 16 16 C -0.12 -3.92 6.40 31.67 0.20 -3.72 16 17 C -0.12 -2.92 6.91 31.89 0.22 -2.70 16 18 C -0.12 -2.64 6.83 31.67 0.22 -2.43 16 19 C -0.12 -2.66 6.48 31.32 0.20 -2.46 16 20 H 0.06 1.53 8.13 -2.39 -0.02 1.51 16 21 H 0.06 1.40 7.46 -2.39 -0.02 1.39 16 22 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 23 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 24 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 25 H -0.03 -1.67 8.14 -2.38 -0.02 -1.69 16 26 H 0.00 0.18 7.75 -2.39 -0.02 0.17 16 27 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 28 H 0.34 10.04 7.75 -89.70 -0.70 9.34 16 29 H 0.05 1.29 7.16 -2.39 -0.02 1.27 16 30 H 0.04 1.73 8.05 -2.39 -0.02 1.71 16 31 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.08 1.46 8.14 -2.39 -0.02 1.45 16 35 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.07 1.55 7.47 -2.38 -0.02 1.54 16 Total: -1.00 -67.66 294.11 2.81 -64.85 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: 0.31 Total: 13.98 kcal Atomic # 6 Polarization: -45.19 SS G_CDS: 2.74 Total: -42.45 kcal Atomic # 7 Polarization: -82.25 SS G_CDS: -2.26 Total: -84.52 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.13 kcal Total: -67.66 2.81 -64.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172475845.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.075 kcal (2) G-P(sol) polarization free energy of solvation -67.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds