Wall clock time and date at job start Sun Mar 29 2020 21:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46661 * 2 1 4 4 C 1.52992 * 109.47705 * 240.00190 * 2 1 3 5 5 C 1.52997 * 109.47482 * 174.99884 * 4 2 1 6 6 C 1.50701 * 109.47212 * 179.97438 * 5 4 2 7 7 H 1.07998 * 120.00129 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99861 * 179.97438 * 6 5 4 9 9 N 1.31510 * 119.99913 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 119.99734 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.47294 * 60.00559 * 10 8 6 12 12 H 1.48503 * 109.46954 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.47431 * 300.00157 * 10 8 6 14 14 N 1.46898 * 109.47061 * 119.99908 * 2 1 3 15 15 C 1.46905 * 110.99865 * 275.00665 * 14 2 1 16 16 C 1.53008 * 109.46972 * 180.02562 * 15 14 2 17 17 H 1.08995 * 115.55032 * 29.27835 * 16 15 14 18 18 C 1.52999 * 117.49672 * 243.60295 * 16 15 14 19 19 C 1.52993 * 60.00166 * 252.51224 * 18 16 15 20 20 H 1.09001 * 117.49772 * 107.48797 * 19 18 16 21 21 C 1.53002 * 117.50080 * 252.51242 * 19 18 16 22 22 H 1.09001 * 109.46974 * 60.00366 * 1 2 3 23 23 H 1.09000 * 109.46929 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47812 * 299.99528 * 1 2 3 25 25 H 1.09002 * 109.47103 * 54.99637 * 4 2 1 26 26 H 1.08998 * 109.46862 * 295.00449 * 4 2 1 27 27 H 1.09002 * 109.47153 * 59.99783 * 5 4 2 28 28 H 1.09001 * 109.46832 * 299.99974 * 5 4 2 29 29 H 0.97002 * 119.99768 * 179.97438 * 9 8 6 30 30 H 1.00895 * 111.00265 * 38.95653 * 14 2 1 31 31 H 1.09003 * 109.46905 * 299.99465 * 15 14 2 32 32 H 1.08999 * 109.47700 * 60.00069 * 15 14 2 33 33 H 1.09000 * 117.49966 * 0.02562 * 18 16 15 34 34 H 1.08999 * 117.49765 * 144.99456 * 18 16 15 35 35 H 1.08997 * 109.47080 * 128.61999 * 21 19 18 36 36 H 1.08993 * 109.47135 * 248.62178 * 21 19 18 37 37 H 1.09000 * 109.46619 * 8.62375 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 6 4.0674 -1.3240 -2.5437 7 1 3.3690 -1.8044 -3.2129 8 6 5.4187 -1.3602 -2.8154 9 7 6.2690 -0.7748 -2.0007 10 14 6.0414 -2.2408 -4.3405 11 1 5.4490 -1.6150 -5.5500 12 1 7.5214 -2.1360 -4.4030 13 1 5.6490 -3.6718 -4.2809 14 7 2.0196 -0.6925 1.1994 15 6 2.0823 0.2227 2.3469 16 6 2.5960 -0.5328 3.5743 17 1 3.2686 -1.3650 3.3666 18 6 1.6473 -0.6717 4.7666 19 6 2.8453 0.2763 4.8487 20 1 2.6433 1.3469 4.8126 21 6 4.0199 -0.1444 5.7342 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3635 0.5137 0.8900 25 1 1.6055 -0.2617 -2.1369 26 1 1.7517 -1.7714 -1.2056 27 1 3.9995 -1.0726 -0.4258 28 1 3.8532 0.4372 -1.3572 29 1 7.2197 -0.8005 -2.1917 30 1 1.4496 -1.4979 1.4100 31 1 2.7587 1.0463 2.1183 32 1 1.0869 0.6163 2.5526 33 1 0.6570 -0.2253 4.6764 34 1 1.6956 -1.5955 5.3432 35 1 4.9467 -0.0774 5.1645 36 1 4.0769 0.5154 6.5998 37 1 3.8727 -1.1712 6.0691 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172476518.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:03 Heat of formation + Delta-G solvation = -22.466859 kcal Electronic energy + Delta-G solvation = -13887.979186 eV Core-core repulsion = 11664.117935 eV Total energy + Delta-G solvation = -2223.861251 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.41682 -37.85921 -35.22887 -32.98732 -30.79697 -29.22417 -27.04029 -25.91835 -23.16817 -21.91148 -21.68726 -20.81537 -18.35430 -16.98477 -16.48813 -16.28315 -15.55346 -15.02173 -14.73366 -14.38323 -14.20991 -13.89672 -13.75029 -13.40064 -13.12367 -13.03553 -12.81188 -12.61065 -12.34745 -12.22897 -12.15028 -11.80583 -11.52804 -11.23266 -10.99675 -10.81692 -10.59006 -10.47757 -9.10737 -8.12980 -6.23985 1.40050 1.43965 1.51625 2.44444 2.83385 3.18953 3.26168 3.88482 3.99462 4.06241 4.10166 4.32084 4.37292 4.45571 4.51398 4.66322 4.77658 4.85666 4.91936 4.93649 4.95789 5.02237 5.06890 5.10293 5.20540 5.28621 5.34494 5.46246 5.48347 5.59366 5.89228 6.03323 6.30958 6.35093 6.67419 6.95894 7.44180 8.98352 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.030230 B = 0.006228 C = 0.005346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.994853 B = 4494.556317 C = 5236.155980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.089 3.911 3 H 0.057 0.943 4 C -0.088 4.088 5 C 0.038 3.962 6 C -0.544 4.544 7 H 0.056 0.944 8 C -0.002 4.002 9 N -0.934 5.934 10 Si 0.963 3.037 11 H -0.267 1.267 12 H -0.283 1.283 13 H -0.267 1.267 14 N -0.691 5.691 15 C 0.099 3.901 16 C -0.163 4.163 17 H 0.092 0.908 18 C -0.161 4.161 19 C -0.152 4.152 20 H 0.106 0.894 21 C -0.122 4.122 22 H 0.065 0.935 23 H 0.062 0.938 24 H 0.061 0.939 25 H 0.050 0.950 26 H 0.048 0.952 27 H 0.002 0.998 28 H -0.025 1.025 29 H 0.261 0.739 30 H 0.343 0.657 31 H 0.051 0.949 32 H 0.042 0.958 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.049 0.951 36 H 0.073 0.927 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.769 1.353 12.390 16.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.021 4.021 3 H 0.075 0.925 4 C -0.126 4.126 5 C 0.001 3.999 6 C -0.582 4.582 7 H 0.074 0.926 8 C -0.200 4.200 9 N -0.575 5.575 10 Si 0.788 3.212 11 H -0.192 1.192 12 H -0.209 1.209 13 H -0.192 1.192 14 N -0.323 5.323 15 C -0.030 4.030 16 C -0.181 4.181 17 H 0.110 0.890 18 C -0.198 4.198 19 C -0.170 4.170 20 H 0.124 0.876 21 C -0.179 4.179 22 H 0.084 0.916 23 H 0.081 0.919 24 H 0.080 0.920 25 H 0.069 0.931 26 H 0.066 0.934 27 H 0.021 0.979 28 H -0.007 1.007 29 H 0.070 0.930 30 H 0.162 0.838 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.120 0.880 34 H 0.119 0.881 35 H 0.068 0.932 36 H 0.092 0.908 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.927 1.470 12.250 15.836 hybrid contribution -0.099 -0.181 -0.651 0.683 sum -10.026 1.289 11.600 15.386 Atomic orbital electron populations 1.22375 0.95286 1.02521 1.02424 1.21519 0.93428 0.96823 0.90306 0.92499 1.21460 0.96482 0.99120 0.95564 1.18826 0.92293 0.93732 0.95072 1.21796 0.92569 1.34443 1.09420 0.92550 1.25986 0.97375 0.96502 1.00099 1.70126 1.02579 1.45662 1.39128 0.85540 0.76984 0.79248 0.79475 1.19154 1.20867 1.19223 1.60362 1.58379 1.10013 1.03530 1.21418 0.98505 0.94291 0.88767 1.22327 1.04053 1.02551 0.89194 0.89013 1.23264 0.94779 1.01326 1.00459 1.22449 0.98359 0.97813 0.98401 0.87603 1.21368 0.96127 1.01625 0.98818 0.91640 0.91871 0.91952 0.93145 0.93357 0.97909 1.00708 0.93027 0.83803 0.93046 0.94020 0.88049 0.88076 0.93185 0.90785 0.92177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.30 9.16 71.98 0.66 -3.64 16 2 C 0.09 3.08 2.59 44.91 0.12 3.19 16 3 H 0.06 2.11 7.80 -2.39 -0.02 2.09 16 4 C -0.09 -3.79 4.83 30.59 0.15 -3.64 16 5 C 0.04 2.12 4.86 29.85 0.15 2.27 16 6 C -0.54 -32.58 9.11 25.60 0.23 -32.35 16 7 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 8 C 0.00 -0.15 5.46 84.66 0.46 0.31 16 9 N -0.93 -59.61 13.29 21.45 0.28 -59.32 16 10 Si 0.96 45.94 29.54 68.60 2.03 47.97 16 11 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 12 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 13 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 14 N -0.69 -23.34 5.70 -491.56 -2.80 -26.14 16 15 C 0.10 2.87 5.76 86.31 0.50 3.36 16 16 C -0.16 -4.25 5.67 -10.79 -0.06 -4.31 16 17 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 18 C -0.16 -3.18 9.82 30.59 0.30 -2.88 16 19 C -0.15 -3.27 6.13 -10.80 -0.07 -3.34 16 20 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 21 C -0.12 -2.41 10.19 71.98 0.73 -1.67 16 22 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 23 H 0.06 1.52 8.13 -2.39 -0.02 1.50 16 24 H 0.06 1.39 7.45 -2.39 -0.02 1.37 16 25 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 26 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 27 H 0.00 0.15 7.75 -2.39 -0.02 0.13 16 28 H -0.03 -1.56 8.14 -2.39 -0.02 -1.58 16 29 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 30 H 0.34 10.33 8.47 -89.70 -0.76 9.57 16 31 H 0.05 1.68 8.06 -2.39 -0.02 1.66 16 32 H 0.04 1.03 7.17 -2.39 -0.02 1.01 16 33 H 0.10 1.76 8.03 -2.39 -0.02 1.74 16 34 H 0.10 1.80 8.05 -2.39 -0.02 1.78 16 35 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.06 1.10 7.90 -2.39 -0.02 1.08 16 Total: -1.00 -67.24 303.42 2.92 -64.32 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: 0.24 Total: 15.86 kcal Atomic # 6 Polarization: -45.85 SS G_CDS: 3.17 Total: -42.68 kcal Atomic # 7 Polarization: -82.95 SS G_CDS: -2.52 Total: -85.46 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.97 kcal Total: -67.24 2.92 -64.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172476518.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.850 kcal (2) G-P(sol) polarization free energy of solvation -67.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds