Wall clock time and date at job start Sun Mar 29 2020 21:38:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47227 * 2 1 4 4 C 1.53000 * 109.47065 * 120.00668 * 2 1 3 5 5 C 1.53004 * 109.46992 * 184.99941 * 4 2 1 6 6 C 1.50699 * 109.46847 * 179.97438 * 5 4 2 7 7 H 1.08002 * 120.00511 * 0.02562 * 6 5 4 8 8 C 1.37884 * 119.99783 * 179.97438 * 6 5 4 9 9 N 1.31514 * 119.99573 * 180.27665 * 8 6 5 10 10 Si 1.86800 * 119.99781 * 359.97438 * 8 6 5 11 11 H 1.48501 * 109.46758 * 89.99934 * 10 8 6 12 12 H 1.48499 * 109.47026 * 209.99782 * 10 8 6 13 13 H 1.48496 * 109.47474 * 329.99818 * 10 8 6 14 14 N 1.46905 * 109.46780 * 240.00095 * 2 1 3 15 15 C 1.46900 * 110.99878 * 85.00069 * 14 2 1 16 16 C 1.52993 * 109.47343 * 179.97438 * 15 14 2 17 17 H 1.09005 * 115.55009 * 29.27692 * 16 15 14 18 18 C 1.52999 * 117.49999 * 243.61412 * 16 15 14 19 19 C 1.53001 * 117.50179 * 174.98760 * 16 15 14 20 20 H 1.09003 * 117.49698 * 0.02562 * 19 16 15 21 21 C 1.52997 * 117.49898 * 214.98077 * 19 16 15 22 22 H 1.08998 * 109.47034 * 59.99345 * 1 2 3 23 23 H 1.08994 * 109.47651 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46750 * 299.99546 * 1 2 3 25 25 H 1.08998 * 109.47307 * 64.99415 * 4 2 1 26 26 H 1.08997 * 109.46799 * 304.99628 * 4 2 1 27 27 H 1.08992 * 109.47264 * 59.99968 * 5 4 2 28 28 H 1.09005 * 109.46939 * 299.99233 * 5 4 2 29 29 H 0.97004 * 119.99485 * 179.72881 * 9 8 6 30 30 H 1.00897 * 110.99938 * 321.04810 * 14 2 1 31 31 H 1.08993 * 109.47383 * 300.00433 * 15 14 2 32 32 H 1.09007 * 109.47086 * 59.99872 * 15 14 2 33 33 H 1.08996 * 117.50161 * 359.97438 * 18 16 15 34 34 H 1.09002 * 117.49792 * 145.00193 * 18 16 15 35 35 H 1.09000 * 109.47187 * 60.00243 * 21 19 16 36 36 H 1.09004 * 109.46902 * 180.02562 * 21 19 16 37 37 H 1.09002 * 109.47547 * 299.99994 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5648 -0.6134 1.3136 6 6 4.0671 -1.3235 2.5443 7 1 3.3687 -1.8040 3.2134 8 6 5.4185 -1.3605 2.8156 9 7 5.8572 -1.9848 3.8868 10 14 6.6266 -0.5311 1.6572 11 1 6.8324 0.8770 2.0819 12 1 7.9234 -1.2538 1.6941 13 1 6.0847 -0.5571 0.2750 14 7 2.0196 -0.6925 -1.1995 15 6 2.0824 0.2226 -2.3469 16 6 2.5960 -0.5327 -3.5742 17 1 2.3652 -1.5977 -3.6015 18 6 3.9306 -0.0837 -4.1727 19 6 2.6226 0.2191 -4.9065 20 1 2.2746 1.2521 -4.9085 21 6 2.3229 -0.5813 -6.1755 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.7515 -1.7716 1.2055 26 1 1.6054 -0.2619 2.1369 27 1 3.8532 0.4367 1.3574 28 1 3.9994 -1.0730 0.4258 29 1 6.8082 -2.0141 4.0756 30 1 1.4494 -1.4979 -1.4101 31 1 1.0871 0.6164 -2.5525 32 1 2.7588 1.0462 -2.1182 33 1 4.4425 0.7500 -3.6923 34 1 4.5777 -0.8533 -4.5937 35 1 1.3232 -1.0103 -6.1068 36 1 2.3771 0.0777 -7.0420 37 1 3.0552 -1.3817 -6.2818 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172476519.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:05 Heat of formation + Delta-G solvation = -1.092417 kcal Electronic energy + Delta-G solvation = -13982.535029 eV Core-core repulsion = 11759.600643 eV Total energy + Delta-G solvation = -2222.934385 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.40599 -36.68261 -33.14649 -31.50612 -29.59695 -28.36937 -25.51371 -24.58432 -21.13070 -21.05219 -20.47011 -19.53657 -16.54243 -15.63937 -15.13588 -14.86519 -14.10572 -13.98658 -13.60067 -13.21099 -12.69005 -12.56485 -12.35729 -12.28942 -12.20591 -11.62546 -11.45148 -11.33050 -11.14105 -10.81735 -10.47841 -10.00183 -9.79034 -9.76476 -9.56038 -9.41622 -8.96569 -8.39504 -7.93742 -5.91164 -3.86842 3.41288 3.48159 3.57664 3.70493 4.34631 4.59330 4.79851 4.83571 5.00203 5.19770 5.27842 5.40907 5.44851 5.53755 5.58479 5.61704 5.62498 5.73029 5.81089 5.86523 5.91010 6.06301 6.19311 6.22346 6.32247 6.33578 6.58912 6.76200 7.15144 7.40637 7.56817 7.74326 7.80764 7.98406 8.69616 9.15233 9.73396 11.22792 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.027165 B = 0.007412 C = 0.006074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.484736 B = 3776.990822 C = 4608.489795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.081 3.919 3 H 0.070 0.930 4 C -0.090 4.090 5 C -0.007 4.007 6 C -0.516 4.516 7 H 0.068 0.932 8 C 0.063 3.937 9 N -0.910 5.910 10 Si 0.879 3.121 11 H -0.281 1.281 12 H -0.291 1.291 13 H -0.260 1.260 14 N -0.673 5.673 15 C 0.090 3.910 16 C -0.140 4.140 17 H 0.105 0.895 18 C -0.169 4.169 19 C -0.161 4.161 20 H 0.100 0.900 21 C -0.120 4.120 22 H 0.044 0.956 23 H 0.055 0.945 24 H 0.060 0.940 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.001 0.999 28 H 0.032 0.968 29 H 0.260 0.740 30 H 0.336 0.664 31 H 0.026 0.974 32 H 0.070 0.930 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.792 4.821 -17.118 19.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.029 4.029 3 H 0.089 0.911 4 C -0.128 4.128 5 C -0.044 4.044 6 C -0.554 4.554 7 H 0.086 0.914 8 C -0.136 4.136 9 N -0.550 5.550 10 Si 0.706 3.294 11 H -0.207 1.207 12 H -0.217 1.217 13 H -0.184 1.184 14 N -0.303 5.303 15 C -0.039 4.039 16 C -0.159 4.159 17 H 0.123 0.877 18 C -0.206 4.206 19 C -0.180 4.180 20 H 0.118 0.882 21 C -0.178 4.178 22 H 0.063 0.937 23 H 0.074 0.926 24 H 0.079 0.921 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.020 0.980 28 H 0.050 0.950 29 H 0.070 0.930 30 H 0.154 0.846 31 H 0.044 0.956 32 H 0.088 0.912 33 H 0.112 0.888 34 H 0.110 0.890 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.962 4.858 -16.858 19.266 hybrid contribution -0.173 0.514 -0.630 0.831 sum -8.135 5.373 -17.487 20.021 Atomic orbital electron populations 1.22516 0.98341 1.01708 1.01326 1.21770 0.91274 0.98244 0.91613 0.91144 1.21449 0.98959 0.99040 0.93329 1.19476 0.91561 0.95787 0.97588 1.21277 0.92816 1.33878 1.07431 0.91428 1.25024 0.98443 0.95130 0.95045 1.69935 1.14351 1.44021 1.26732 0.86779 0.80389 0.79411 0.82801 1.20676 1.21719 1.18448 1.60510 1.57703 1.09106 1.02997 1.21519 0.98385 0.95037 0.88954 1.22360 1.01201 0.99635 0.92678 0.87690 1.23151 0.90581 1.03323 1.03521 1.22403 1.02614 0.99989 0.92986 0.88209 1.21338 1.01420 0.99343 0.95648 0.93716 0.92631 0.92141 0.92863 0.92949 0.98033 0.94964 0.93007 0.84555 0.95556 0.91186 0.88839 0.88972 0.92428 0.92429 0.92569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.37 9.16 37.16 0.34 -2.03 16 2 C 0.08 1.31 2.59 -67.71 -0.18 1.13 16 3 H 0.07 1.17 7.80 -51.93 -0.40 0.77 16 4 C -0.09 -1.83 4.83 -26.73 -0.13 -1.95 16 5 C -0.01 -0.17 3.93 -27.88 -0.11 -0.28 16 6 C -0.52 -15.35 9.66 -34.44 -0.33 -15.69 16 7 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 8 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 9 N -0.91 -29.14 13.96 55.43 0.77 -28.37 16 10 Si 0.88 22.83 27.47 -169.99 -4.67 18.16 16 11 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 12 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 13 H -0.26 -6.58 6.54 56.52 0.37 -6.21 16 14 N -0.67 -10.50 5.70 -106.73 -0.61 -11.11 16 15 C 0.09 1.21 5.76 -3.83 -0.02 1.19 16 16 C -0.14 -1.71 5.67 -90.62 -0.51 -2.23 16 17 H 0.11 1.28 8.13 -51.93 -0.42 0.86 16 18 C -0.17 -2.02 9.82 -26.73 -0.26 -2.28 16 19 C -0.16 -1.67 6.13 -90.62 -0.56 -2.23 16 20 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 21 C -0.12 -1.05 10.19 37.16 0.38 -0.67 16 22 H 0.04 0.53 7.45 -51.93 -0.39 0.14 16 23 H 0.05 0.70 8.13 -51.93 -0.42 0.28 16 24 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 26 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 27 H 0.00 0.03 7.57 -51.93 -0.39 -0.36 16 28 H 0.03 0.83 6.81 -51.93 -0.35 0.48 16 29 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 30 H 0.34 4.76 8.46 -39.29 -0.33 4.43 16 31 H 0.03 0.32 7.44 -51.93 -0.39 -0.06 16 32 H 0.07 1.00 7.79 -51.93 -0.40 0.60 16 33 H 0.09 1.16 8.03 -51.93 -0.42 0.74 16 34 H 0.09 1.05 8.05 -51.93 -0.42 0.64 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.49 7.90 -51.93 -0.41 0.08 16 LS Contribution 299.80 15.07 4.52 4.52 Total: -1.00 -31.62 299.80 -8.34 -39.96 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -6.87 Total: 0.04 kcal Atomic # 6 Polarization: -21.72 SS G_CDS: -1.48 Total: -23.20 kcal Atomic # 7 Polarization: -39.64 SS G_CDS: 0.16 Total: -39.48 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -4.67 Total: 18.16 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -31.62 -8.34 -39.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172476519.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.870 kcal (2) G-P(sol) polarization free energy of solvation -31.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds