Wall clock time and date at job start Sun Mar 29 2020 21:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47227 * 2 1 4 4 C 1.53000 * 109.47065 * 120.00668 * 2 1 3 5 5 C 1.53004 * 109.46992 * 184.99941 * 4 2 1 6 6 C 1.50699 * 109.46847 * 179.97438 * 5 4 2 7 7 H 1.08002 * 120.00511 * 0.02562 * 6 5 4 8 8 C 1.37884 * 119.99783 * 179.97438 * 6 5 4 9 9 N 1.31514 * 119.99573 * 180.27665 * 8 6 5 10 10 Si 1.86800 * 119.99781 * 359.97438 * 8 6 5 11 11 H 1.48501 * 109.46758 * 89.99934 * 10 8 6 12 12 H 1.48499 * 109.47026 * 209.99782 * 10 8 6 13 13 H 1.48496 * 109.47474 * 329.99818 * 10 8 6 14 14 N 1.46905 * 109.46780 * 240.00095 * 2 1 3 15 15 C 1.46900 * 110.99878 * 85.00069 * 14 2 1 16 16 C 1.52993 * 109.47343 * 179.97438 * 15 14 2 17 17 H 1.09005 * 115.55009 * 29.27692 * 16 15 14 18 18 C 1.52999 * 117.49999 * 243.61412 * 16 15 14 19 19 C 1.53001 * 117.50179 * 174.98760 * 16 15 14 20 20 H 1.09003 * 117.49698 * 0.02562 * 19 16 15 21 21 C 1.52997 * 117.49898 * 214.98077 * 19 16 15 22 22 H 1.08998 * 109.47034 * 59.99345 * 1 2 3 23 23 H 1.08994 * 109.47651 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46750 * 299.99546 * 1 2 3 25 25 H 1.08998 * 109.47307 * 64.99415 * 4 2 1 26 26 H 1.08997 * 109.46799 * 304.99628 * 4 2 1 27 27 H 1.08992 * 109.47264 * 59.99968 * 5 4 2 28 28 H 1.09005 * 109.46939 * 299.99233 * 5 4 2 29 29 H 0.97004 * 119.99485 * 179.72881 * 9 8 6 30 30 H 1.00897 * 110.99938 * 321.04810 * 14 2 1 31 31 H 1.08993 * 109.47383 * 300.00433 * 15 14 2 32 32 H 1.09007 * 109.47086 * 59.99872 * 15 14 2 33 33 H 1.08996 * 117.50161 * 359.97438 * 18 16 15 34 34 H 1.09002 * 117.49792 * 145.00193 * 18 16 15 35 35 H 1.09000 * 109.47187 * 60.00243 * 21 19 16 36 36 H 1.09004 * 109.46902 * 180.02562 * 21 19 16 37 37 H 1.09002 * 109.47547 * 299.99994 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5648 -0.6134 1.3136 6 6 4.0671 -1.3235 2.5443 7 1 3.3687 -1.8040 3.2134 8 6 5.4185 -1.3605 2.8156 9 7 5.8572 -1.9848 3.8868 10 14 6.6266 -0.5311 1.6572 11 1 6.8324 0.8770 2.0819 12 1 7.9234 -1.2538 1.6941 13 1 6.0847 -0.5571 0.2750 14 7 2.0196 -0.6925 -1.1995 15 6 2.0824 0.2226 -2.3469 16 6 2.5960 -0.5327 -3.5742 17 1 2.3652 -1.5977 -3.6015 18 6 3.9306 -0.0837 -4.1727 19 6 2.6226 0.2191 -4.9065 20 1 2.2746 1.2521 -4.9085 21 6 2.3229 -0.5813 -6.1755 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.7515 -1.7716 1.2055 26 1 1.6054 -0.2619 2.1369 27 1 3.8532 0.4367 1.3574 28 1 3.9994 -1.0730 0.4258 29 1 6.8082 -2.0141 4.0756 30 1 1.4494 -1.4979 -1.4101 31 1 1.0871 0.6164 -2.5525 32 1 2.7588 1.0462 -2.1182 33 1 4.4425 0.7500 -3.6923 34 1 4.5777 -0.8533 -4.5937 35 1 1.3232 -1.0103 -6.1068 36 1 2.3771 0.0777 -7.0420 37 1 3.0552 -1.3817 -6.2818 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172476519.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:04 Heat of formation + Delta-G solvation = -20.660193 kcal Electronic energy + Delta-G solvation = -13983.383551 eV Core-core repulsion = 11759.600643 eV Total energy + Delta-G solvation = -2223.782908 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.41021 -37.89710 -35.20138 -33.20285 -31.08412 -29.22654 -27.15631 -25.87137 -22.79878 -22.08152 -21.63083 -20.82109 -18.81025 -16.76930 -16.33889 -16.26887 -15.84362 -15.06538 -14.95116 -14.51533 -14.20384 -13.92402 -13.77309 -13.40508 -13.21329 -13.05167 -12.89404 -12.69525 -12.29927 -12.12734 -11.99776 -11.66668 -11.49172 -11.37105 -11.14106 -10.83493 -10.72385 -10.60736 -9.11316 -8.26627 -6.28392 1.34832 1.37986 1.52928 2.39301 2.80882 3.09725 3.31095 3.85895 3.95551 4.03464 4.12846 4.29265 4.43597 4.45218 4.53674 4.65703 4.71351 4.75111 4.91991 4.95757 4.96196 4.98952 5.03382 5.05600 5.20227 5.24078 5.33342 5.38221 5.48145 5.60068 5.70945 5.78866 6.27900 6.34814 6.63629 6.80292 7.36041 8.90615 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.027165 B = 0.007412 C = 0.006074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.484736 B = 3776.990822 C = 4608.489795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.089 3.911 3 H 0.068 0.932 4 C -0.085 4.085 5 C 0.001 3.999 6 C -0.530 4.530 7 H 0.029 0.971 8 C 0.003 3.997 9 N -0.956 5.956 10 Si 0.951 3.049 11 H -0.268 1.268 12 H -0.284 1.284 13 H -0.249 1.249 14 N -0.692 5.692 15 C 0.096 3.904 16 C -0.152 4.152 17 H 0.103 0.897 18 C -0.184 4.184 19 C -0.141 4.141 20 H 0.108 0.892 21 C -0.120 4.120 22 H 0.064 0.936 23 H 0.059 0.941 24 H 0.063 0.937 25 H 0.045 0.955 26 H 0.048 0.952 27 H 0.003 0.997 28 H 0.026 0.974 29 H 0.265 0.735 30 H 0.344 0.656 31 H 0.043 0.957 32 H 0.058 0.942 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.338 5.997 -19.509 22.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.021 4.021 3 H 0.086 0.914 4 C -0.123 4.123 5 C -0.036 4.036 6 C -0.568 4.568 7 H 0.047 0.953 8 C -0.193 4.193 9 N -0.597 5.597 10 Si 0.774 3.226 11 H -0.193 1.193 12 H -0.210 1.210 13 H -0.172 1.172 14 N -0.324 5.324 15 C -0.033 4.033 16 C -0.171 4.171 17 H 0.121 0.879 18 C -0.221 4.221 19 C -0.160 4.160 20 H 0.126 0.874 21 C -0.178 4.178 22 H 0.083 0.917 23 H 0.078 0.922 24 H 0.082 0.918 25 H 0.063 0.937 26 H 0.067 0.933 27 H 0.022 0.978 28 H 0.045 0.955 29 H 0.073 0.927 30 H 0.163 0.837 31 H 0.061 0.939 32 H 0.076 0.924 33 H 0.104 0.896 34 H 0.112 0.888 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.530 6.036 -19.259 21.911 hybrid contribution -0.031 0.090 0.182 0.206 sum -8.561 6.127 -19.077 21.788 Atomic orbital electron populations 1.22386 0.95574 1.02430 1.02488 1.21534 0.93381 0.97190 0.89962 0.91383 1.21347 0.95862 0.99292 0.95828 1.19363 0.94695 0.94802 0.94740 1.21667 0.92612 1.33924 1.08586 0.95296 1.25997 1.00659 0.95858 0.96815 1.70083 1.15100 1.45692 1.28830 0.85645 0.77615 0.78631 0.80680 1.19344 1.21025 1.17236 1.60410 1.58368 1.10015 1.03607 1.21476 0.99033 0.94362 0.88450 1.22345 1.01627 0.99719 0.93366 0.87866 1.23205 0.91069 1.03355 1.04453 1.22482 1.00563 1.00316 0.92607 0.87401 1.21372 1.01749 0.99414 0.95218 0.91710 0.92167 0.91795 0.93667 0.93313 0.97839 0.95527 0.92668 0.83713 0.93890 0.92364 0.89587 0.88837 0.91724 0.91080 0.92717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.03 9.16 71.98 0.66 -3.37 16 2 C 0.09 2.74 2.59 44.91 0.12 2.86 16 3 H 0.07 2.13 7.80 -2.39 -0.02 2.12 16 4 C -0.09 -3.44 4.83 30.60 0.15 -3.29 16 5 C 0.00 0.07 3.93 29.85 0.12 0.19 16 6 C -0.53 -32.25 9.66 25.60 0.25 -32.00 16 7 H 0.03 1.92 7.99 -2.91 -0.02 1.89 16 8 C 0.00 0.16 5.47 84.66 0.46 0.62 16 9 N -0.96 -62.42 13.96 21.45 0.30 -62.12 16 10 Si 0.95 47.09 27.47 68.60 1.88 48.98 16 11 H -0.27 -12.70 7.11 99.48 0.71 -12.00 16 12 H -0.28 -13.71 7.11 99.48 0.71 -13.01 16 13 H -0.25 -11.77 6.54 99.48 0.65 -11.12 16 14 N -0.69 -20.41 5.70 -491.58 -2.80 -23.22 16 15 C 0.10 2.35 5.76 86.30 0.50 2.85 16 16 C -0.15 -3.42 5.67 -10.80 -0.06 -3.48 16 17 H 0.10 2.35 8.13 -2.38 -0.02 2.33 16 18 C -0.18 -4.11 9.82 30.60 0.30 -3.81 16 19 C -0.14 -2.57 6.13 -10.79 -0.07 -2.64 16 20 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 21 C -0.12 -1.77 10.19 71.98 0.73 -1.04 16 22 H 0.06 1.30 7.45 -2.39 -0.02 1.28 16 23 H 0.06 1.38 8.13 -2.39 -0.02 1.36 16 24 H 0.06 1.47 8.14 -2.39 -0.02 1.46 16 25 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 26 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.00 0.16 7.57 -2.39 -0.02 0.14 16 28 H 0.03 1.35 6.81 -2.38 -0.02 1.33 16 29 H 0.26 16.09 8.31 -92.71 -0.77 15.32 16 30 H 0.34 9.12 8.46 -89.70 -0.76 8.36 16 31 H 0.04 0.92 7.44 -2.39 -0.02 0.90 16 32 H 0.06 1.57 7.79 -2.38 -0.02 1.55 16 33 H 0.09 2.03 8.03 -2.39 -0.02 2.01 16 34 H 0.09 2.02 8.05 -2.39 -0.02 2.00 16 35 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.05 0.82 7.90 -2.39 -0.02 0.81 16 Total: -1.00 -68.17 299.80 2.73 -65.44 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: 0.19 Total: 14.01 kcal Atomic # 6 Polarization: -46.25 SS G_CDS: 3.16 Total: -43.09 kcal Atomic # 7 Polarization: -82.83 SS G_CDS: -2.50 Total: -85.33 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 1.88 Total: 48.98 kcal Total: -68.17 2.73 -65.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172476519.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.784 kcal (2) G-P(sol) polarization free energy of solvation -68.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds