Wall clock time and date at job start Sun Mar 29 2020 21:41:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.46722 * 2 1 4 4 C 1.52999 * 109.46978 * 240.00463 * 2 1 3 5 5 C 1.53006 * 109.46626 * 174.99863 * 4 2 1 6 6 C 1.50699 * 109.46866 * 179.97438 * 5 4 2 7 7 H 1.08003 * 119.99963 * 359.97438 * 6 5 4 8 8 C 1.37874 * 120.00270 * 179.97438 * 6 5 4 9 9 N 1.31522 * 119.99835 * 0.02562 * 8 6 5 10 10 Si 1.86793 * 120.00496 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.47183 * 60.00274 * 10 8 6 12 12 H 1.48496 * 109.47425 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.47216 * 300.00267 * 10 8 6 14 14 N 1.46897 * 109.46901 * 120.00238 * 2 1 3 15 15 C 1.46904 * 110.99695 * 274.99876 * 14 2 1 16 16 C 1.53000 * 109.46875 * 180.02562 * 15 14 2 17 17 C 1.52996 * 115.55178 * 34.33165 * 16 15 14 18 18 C 1.53005 * 117.49829 * 248.62256 * 16 15 14 19 19 C 1.52996 * 60.00111 * 252.50996 * 18 16 15 20 20 H 1.09001 * 109.47356 * 299.99537 * 1 2 3 21 21 H 1.09000 * 109.47210 * 60.00163 * 1 2 3 22 22 H 1.09007 * 109.46638 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.47839 * 54.99933 * 4 2 1 24 24 H 1.09000 * 109.47160 * 294.99494 * 4 2 1 25 25 H 1.09000 * 109.47050 * 299.99699 * 5 4 2 26 26 H 1.09001 * 109.46801 * 59.99811 * 5 4 2 27 27 H 0.96992 * 120.00038 * 180.02562 * 9 8 6 28 28 H 1.00896 * 111.00189 * 38.95500 * 14 2 1 29 29 H 1.08996 * 109.47724 * 300.00447 * 15 14 2 30 30 H 1.09003 * 109.46954 * 60.00554 * 15 14 2 31 31 H 1.09003 * 109.47272 * 85.58251 * 17 16 15 32 32 H 1.09002 * 109.47219 * 205.58275 * 17 16 15 33 33 H 1.09004 * 109.47352 * 325.58270 * 17 16 15 34 34 H 1.08999 * 117.49655 * 0.02562 * 18 16 15 35 35 H 1.08996 * 117.50012 * 145.01838 * 18 16 15 36 36 H 1.08999 * 117.49959 * 252.50622 * 19 18 16 37 37 H 1.09000 * 117.50009 * 107.49058 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5649 -0.6131 -1.3137 6 6 4.0673 -1.3239 -2.5438 7 1 3.3689 -1.8050 -3.2126 8 6 5.4185 -1.3601 -2.8156 9 7 6.2690 -0.7747 -2.0010 10 14 6.0414 -2.2418 -4.3401 11 1 5.4488 -1.6172 -5.5500 12 1 7.5213 -2.1369 -4.4027 13 1 5.6492 -3.6728 -4.2792 14 7 2.0196 -0.6925 1.1994 15 6 2.0824 0.2226 2.3469 16 6 2.5961 -0.5329 3.5741 17 6 3.6324 -1.6226 3.2922 18 6 1.6102 -0.7742 4.7190 19 6 2.7337 0.2518 4.8804 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0278 -0.0005 23 1 1.6055 -0.2617 -2.1370 24 1 1.7517 -1.7714 -1.2057 25 1 3.8532 0.4372 -1.3573 26 1 3.9994 -1.0726 -0.4259 27 1 7.2196 -0.7999 -2.1924 28 1 1.4496 -1.4979 1.4099 29 1 2.7587 1.0462 2.1183 30 1 1.0870 0.6162 2.5525 31 1 4.6269 -1.1778 3.2562 32 1 3.5976 -2.3708 4.0842 33 1 3.4111 -2.0957 2.3355 34 1 0.5955 -0.3950 4.5977 35 1 1.6996 -1.7095 5.2715 36 1 3.5622 -0.0085 5.5391 37 1 2.4582 1.3063 4.8654 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172476833.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:54 Heat of formation + Delta-G solvation = 0.850553 kcal Electronic energy + Delta-G solvation = -14195.904488 eV Core-core repulsion = 11973.054357 eV Total energy + Delta-G solvation = -2222.850132 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.51307 -36.40770 -33.07967 -31.12841 -29.06998 -27.86789 -25.37163 -24.50950 -22.39180 -21.24999 -19.85539 -18.69345 -16.08220 -15.68889 -15.06012 -14.44248 -14.37103 -14.04087 -13.17545 -12.83920 -12.68374 -12.35108 -12.17847 -12.06425 -11.71695 -11.32992 -11.29413 -11.13131 -10.91198 -10.76220 -10.43605 -10.31467 -9.91237 -9.57799 -9.46636 -9.15296 -8.86526 -8.18992 -7.79191 -5.84551 -3.85631 3.40934 3.45042 3.47619 3.82806 4.48036 4.57217 4.87400 4.98992 5.15563 5.30105 5.40749 5.50633 5.58096 5.64847 5.70862 5.76004 5.89404 5.92959 6.07355 6.15002 6.20905 6.29282 6.34595 6.38902 6.47098 6.71864 6.82149 6.94340 7.36523 7.58800 7.88392 7.89924 8.12927 8.28528 8.61995 9.23410 9.76647 11.26438 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.034435 B = 0.006799 C = 0.005965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.939528 B = 4117.191144 C = 4692.680555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.083 3.917 3 H 0.070 0.930 4 C -0.098 4.098 5 C 0.030 3.970 6 C -0.518 4.518 7 H 0.050 0.950 8 C 0.056 3.944 9 N -0.895 5.895 10 Si 0.887 3.113 11 H -0.279 1.279 12 H -0.288 1.288 13 H -0.278 1.278 14 N -0.666 5.666 15 C 0.098 3.902 16 C -0.115 4.115 17 C -0.112 4.112 18 C -0.183 4.183 19 C -0.178 4.178 20 H 0.042 0.958 21 H 0.057 0.943 22 H 0.053 0.947 23 H 0.045 0.955 24 H 0.046 0.954 25 H 0.006 0.994 26 H 0.033 0.967 27 H 0.258 0.742 28 H 0.335 0.665 29 H 0.074 0.926 30 H 0.022 0.978 31 H 0.057 0.943 32 H 0.042 0.958 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.528 1.186 11.108 14.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.027 4.027 3 H 0.089 0.911 4 C -0.136 4.136 5 C -0.007 4.007 6 C -0.557 4.557 7 H 0.068 0.932 8 C -0.144 4.144 9 N -0.535 5.535 10 Si 0.715 3.285 11 H -0.205 1.205 12 H -0.214 1.214 13 H -0.204 1.204 14 N -0.296 5.296 15 C -0.032 4.032 16 C -0.115 4.115 17 C -0.169 4.169 18 C -0.220 4.220 19 C -0.215 4.215 20 H 0.061 0.939 21 H 0.077 0.923 22 H 0.072 0.928 23 H 0.064 0.936 24 H 0.065 0.935 25 H 0.024 0.976 26 H 0.052 0.948 27 H 0.068 0.932 28 H 0.153 0.847 29 H 0.092 0.908 30 H 0.040 0.960 31 H 0.076 0.924 32 H 0.061 0.939 33 H 0.104 0.896 34 H 0.106 0.894 35 H 0.109 0.891 36 H 0.111 0.889 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.666 1.305 10.959 14.032 hybrid contribution -0.573 -0.287 -0.559 0.851 sum -9.239 1.017 10.400 13.948 Atomic orbital electron populations 1.22537 0.98752 1.01472 1.01124 1.21738 0.90806 0.98373 0.91734 0.91134 1.21623 1.00615 0.98334 0.93017 1.18991 0.88294 0.96433 0.97000 1.21324 0.91827 1.34011 1.08525 0.93212 1.24994 0.97138 0.95808 0.96477 1.69972 1.02171 1.44392 1.36936 0.86750 0.77559 0.80301 0.83879 1.20454 1.21424 1.20394 1.60516 1.57295 1.08965 1.02781 1.21435 0.97876 0.94917 0.88937 1.21577 1.00267 1.00500 0.89198 1.21273 0.97100 0.95893 1.02610 1.23154 0.94952 1.00679 1.03224 1.22982 1.00932 0.97099 1.00521 0.93864 0.92342 0.92817 0.93634 0.93516 0.97564 0.94835 0.93231 0.84736 0.90783 0.96010 0.92351 0.93871 0.89552 0.89441 0.89125 0.88926 0.89193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.49 9.16 37.16 0.34 -2.15 16 2 C 0.08 1.42 2.59 -67.71 -0.18 1.24 16 3 H 0.07 1.27 7.80 -51.93 -0.40 0.86 16 4 C -0.10 -2.06 4.83 -26.73 -0.13 -2.18 16 5 C 0.03 0.79 4.86 -27.88 -0.14 0.66 16 6 C -0.52 -15.14 9.11 -34.44 -0.31 -15.46 16 7 H 0.05 1.41 7.74 -52.48 -0.41 1.01 16 8 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 9 N -0.89 -27.68 13.29 55.43 0.74 -26.95 16 10 Si 0.89 22.24 29.54 -169.99 -5.02 17.22 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 13 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 14 N -0.67 -10.87 4.22 -106.72 -0.45 -11.32 16 15 C 0.10 1.42 5.62 -3.82 -0.02 1.39 16 16 C -0.12 -1.52 2.51 -154.51 -0.39 -1.91 16 17 C -0.11 -1.62 9.73 37.16 0.36 -1.26 16 18 C -0.18 -2.04 9.82 -26.73 -0.26 -2.30 16 19 C -0.18 -2.04 9.97 -26.73 -0.27 -2.30 16 20 H 0.04 0.54 7.45 -51.93 -0.39 0.16 16 21 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 22 H 0.05 0.71 8.13 -51.93 -0.42 0.29 16 23 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 25 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 26 H 0.03 0.95 7.75 -51.93 -0.40 0.55 16 27 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 28 H 0.33 5.04 8.36 -39.29 -0.33 4.71 16 29 H 0.07 1.17 8.05 -51.93 -0.42 0.75 16 30 H 0.02 0.29 7.19 -51.93 -0.37 -0.08 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.04 0.54 7.90 -51.93 -0.41 0.13 16 33 H 0.09 1.42 6.70 -51.93 -0.35 1.07 16 34 H 0.09 0.92 8.05 -51.93 -0.42 0.50 16 35 H 0.09 0.94 8.05 -51.93 -0.42 0.53 16 36 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 LS Contribution 300.51 15.07 4.53 4.53 Total: -1.00 -30.28 300.51 -8.12 -38.40 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -6.83 Total: 0.81 kcal Atomic # 6 Polarization: -21.62 SS G_CDS: -1.09 Total: -22.70 kcal Atomic # 7 Polarization: -38.55 SS G_CDS: 0.29 Total: -38.26 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.28 -8.12 -38.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172476833.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.255 kcal (2) G-P(sol) polarization free energy of solvation -30.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds