Wall clock time and date at job start Sun Mar 29 2020 21:41:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.46722 * 2 1 4 4 C 1.52999 * 109.46978 * 240.00463 * 2 1 3 5 5 C 1.53006 * 109.46626 * 174.99863 * 4 2 1 6 6 C 1.50699 * 109.46866 * 179.97438 * 5 4 2 7 7 H 1.08003 * 119.99963 * 359.97438 * 6 5 4 8 8 C 1.37874 * 120.00270 * 179.97438 * 6 5 4 9 9 N 1.31522 * 119.99835 * 0.02562 * 8 6 5 10 10 Si 1.86793 * 120.00496 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.47183 * 60.00274 * 10 8 6 12 12 H 1.48496 * 109.47425 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.47216 * 300.00267 * 10 8 6 14 14 N 1.46897 * 109.46901 * 120.00238 * 2 1 3 15 15 C 1.46904 * 110.99695 * 274.99876 * 14 2 1 16 16 C 1.53000 * 109.46875 * 180.02562 * 15 14 2 17 17 C 1.52996 * 115.55178 * 34.33165 * 16 15 14 18 18 C 1.53005 * 117.49829 * 248.62256 * 16 15 14 19 19 C 1.52996 * 60.00111 * 252.50996 * 18 16 15 20 20 H 1.09001 * 109.47356 * 299.99537 * 1 2 3 21 21 H 1.09000 * 109.47210 * 60.00163 * 1 2 3 22 22 H 1.09007 * 109.46638 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.47839 * 54.99933 * 4 2 1 24 24 H 1.09000 * 109.47160 * 294.99494 * 4 2 1 25 25 H 1.09000 * 109.47050 * 299.99699 * 5 4 2 26 26 H 1.09001 * 109.46801 * 59.99811 * 5 4 2 27 27 H 0.96992 * 120.00038 * 180.02562 * 9 8 6 28 28 H 1.00896 * 111.00189 * 38.95500 * 14 2 1 29 29 H 1.08996 * 109.47724 * 300.00447 * 15 14 2 30 30 H 1.09003 * 109.46954 * 60.00554 * 15 14 2 31 31 H 1.09003 * 109.47272 * 85.58251 * 17 16 15 32 32 H 1.09002 * 109.47219 * 205.58275 * 17 16 15 33 33 H 1.09004 * 109.47352 * 325.58270 * 17 16 15 34 34 H 1.08999 * 117.49655 * 0.02562 * 18 16 15 35 35 H 1.08996 * 117.50012 * 145.01838 * 18 16 15 36 36 H 1.08999 * 117.49959 * 252.50622 * 19 18 16 37 37 H 1.09000 * 117.50009 * 107.49058 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5649 -0.6131 -1.3137 6 6 4.0673 -1.3239 -2.5438 7 1 3.3689 -1.8050 -3.2126 8 6 5.4185 -1.3601 -2.8156 9 7 6.2690 -0.7747 -2.0010 10 14 6.0414 -2.2418 -4.3401 11 1 5.4488 -1.6172 -5.5500 12 1 7.5213 -2.1369 -4.4027 13 1 5.6492 -3.6728 -4.2792 14 7 2.0196 -0.6925 1.1994 15 6 2.0824 0.2226 2.3469 16 6 2.5961 -0.5329 3.5741 17 6 3.6324 -1.6226 3.2922 18 6 1.6102 -0.7742 4.7190 19 6 2.7337 0.2518 4.8804 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0278 -0.0005 23 1 1.6055 -0.2617 -2.1370 24 1 1.7517 -1.7714 -1.2057 25 1 3.8532 0.4372 -1.3573 26 1 3.9994 -1.0726 -0.4259 27 1 7.2196 -0.7999 -2.1924 28 1 1.4496 -1.4979 1.4099 29 1 2.7587 1.0462 2.1183 30 1 1.0870 0.6162 2.5525 31 1 4.6269 -1.1778 3.2562 32 1 3.5976 -2.3708 4.0842 33 1 3.4111 -2.0957 2.3355 34 1 0.5955 -0.3950 4.5977 35 1 1.6996 -1.7095 5.2715 36 1 3.5622 -0.0085 5.5391 37 1 2.4582 1.3063 4.8654 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172476833.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:54 Heat of formation + Delta-G solvation = -16.598347 kcal Electronic energy + Delta-G solvation = -14196.661130 eV Core-core repulsion = 11973.054357 eV Total energy + Delta-G solvation = -2223.606773 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.62017 -37.74110 -35.17661 -32.80094 -30.65150 -29.02393 -27.05725 -26.00400 -23.32382 -23.06371 -21.40342 -19.80870 -18.34334 -16.84655 -16.48769 -16.34568 -15.59241 -15.19881 -14.56140 -14.38196 -14.19023 -13.83843 -13.62660 -13.28475 -13.13670 -13.02415 -12.80855 -12.54225 -12.32913 -12.23081 -12.02389 -11.81117 -11.51018 -11.23314 -11.02545 -10.89957 -10.47073 -10.46117 -9.06476 -8.11960 -6.22668 1.40365 1.43994 1.51636 2.44928 2.86560 3.19937 3.31057 3.88516 4.03517 4.05882 4.13330 4.22212 4.34763 4.48790 4.65538 4.74142 4.79645 4.80073 4.95869 5.02053 5.03043 5.07291 5.14535 5.17537 5.28197 5.29832 5.30244 5.48606 5.58339 5.61992 5.91030 6.05524 6.32387 6.36535 6.68997 6.97318 7.45313 8.99126 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.034435 B = 0.006799 C = 0.005965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.939528 B = 4117.191144 C = 4692.680555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.089 3.911 3 H 0.056 0.944 4 C -0.087 4.087 5 C 0.039 3.961 6 C -0.543 4.543 7 H 0.055 0.945 8 C -0.002 4.002 9 N -0.933 5.933 10 Si 0.962 3.038 11 H -0.267 1.267 12 H -0.284 1.284 13 H -0.268 1.268 14 N -0.684 5.684 15 C 0.104 3.896 16 C -0.139 4.139 17 C -0.107 4.107 18 C -0.162 4.162 19 C -0.172 4.172 20 H 0.061 0.939 21 H 0.063 0.937 22 H 0.062 0.938 23 H 0.048 0.952 24 H 0.048 0.952 25 H -0.026 1.026 26 H 0.005 0.995 27 H 0.261 0.739 28 H 0.343 0.657 29 H 0.050 0.950 30 H 0.041 0.959 31 H 0.037 0.963 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.100 0.900 35 H 0.101 0.899 36 H 0.098 0.902 37 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.038 0.615 11.381 15.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.021 4.021 3 H 0.074 0.926 4 C -0.126 4.126 5 C 0.002 3.998 6 C -0.582 4.582 7 H 0.074 0.926 8 C -0.199 4.199 9 N -0.574 5.574 10 Si 0.786 3.214 11 H -0.192 1.192 12 H -0.209 1.209 13 H -0.193 1.193 14 N -0.315 5.315 15 C -0.025 4.025 16 C -0.140 4.140 17 C -0.164 4.164 18 C -0.199 4.199 19 C -0.210 4.210 20 H 0.080 0.920 21 H 0.082 0.918 22 H 0.081 0.919 23 H 0.067 0.933 24 H 0.066 0.934 25 H -0.008 1.008 26 H 0.023 0.977 27 H 0.069 0.931 28 H 0.162 0.838 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.118 0.882 35 H 0.119 0.881 36 H 0.116 0.884 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -10.197 0.731 11.237 15.192 hybrid contribution -0.065 -0.097 -0.611 0.622 sum -10.262 0.635 10.626 14.786 Atomic orbital electron populations 1.22377 0.95407 1.02472 1.02341 1.21516 0.93316 0.96826 0.90409 0.92564 1.21452 0.96513 0.99089 0.95499 1.18816 0.92232 0.93664 0.95086 1.21795 0.92518 1.34372 1.09468 0.92648 1.25964 0.97399 0.96525 1.00019 1.70125 1.02542 1.45668 1.39044 0.85562 0.76974 0.79272 0.79578 1.19238 1.20916 1.19250 1.60382 1.58049 1.09800 1.03299 1.21355 0.98337 0.94087 0.88730 1.21473 1.01649 1.01163 0.89671 1.21176 0.96580 0.96682 1.02005 1.23213 0.95074 1.00924 1.00699 1.23069 1.01463 0.97714 0.98731 0.92004 0.91763 0.91894 0.93321 0.93352 1.00806 0.97658 0.93073 0.83821 0.93111 0.94055 0.94384 0.92011 0.91994 0.88169 0.88071 0.88355 0.88377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.25 9.16 71.98 0.66 -3.59 16 2 C 0.09 3.03 2.59 44.92 0.12 3.15 16 3 H 0.06 2.06 7.80 -2.39 -0.02 2.04 16 4 C -0.09 -3.71 4.83 30.60 0.15 -3.56 16 5 C 0.04 2.17 4.86 29.85 0.15 2.31 16 6 C -0.54 -32.33 9.11 25.60 0.23 -32.09 16 7 H 0.06 3.15 7.74 -2.91 -0.02 3.13 16 8 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 9 N -0.93 -59.20 13.29 21.45 0.28 -58.92 16 10 Si 0.96 45.82 29.54 68.60 2.03 47.85 16 11 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 12 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 13 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 14 N -0.68 -22.43 4.22 -491.56 -2.08 -24.51 16 15 C 0.10 2.97 5.62 86.30 0.49 3.45 16 16 C -0.14 -3.56 2.51 -52.18 -0.13 -3.69 16 17 C -0.11 -3.15 9.73 71.98 0.70 -2.45 16 18 C -0.16 -3.16 9.82 30.59 0.30 -2.86 16 19 C -0.17 -3.62 9.97 30.59 0.31 -3.31 16 20 H 0.06 1.36 7.45 -2.39 -0.02 1.34 16 21 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 22 H 0.06 1.50 8.13 -2.38 -0.02 1.48 16 23 H 0.05 2.00 8.14 -2.39 -0.02 1.99 16 24 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 25 H -0.03 -1.61 8.14 -2.39 -0.02 -1.63 16 26 H 0.00 0.30 7.75 -2.39 -0.02 0.28 16 27 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 28 H 0.34 10.10 8.36 -89.70 -0.75 9.35 16 29 H 0.05 1.65 8.05 -2.39 -0.02 1.63 16 30 H 0.04 1.01 7.19 -2.39 -0.02 1.00 16 31 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.06 1.52 7.90 -2.39 -0.02 1.51 16 33 H 0.06 2.11 6.70 -2.39 -0.02 2.09 16 34 H 0.10 1.73 8.05 -2.39 -0.02 1.71 16 35 H 0.10 1.78 8.05 -2.39 -0.02 1.77 16 36 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -66.28 300.51 3.92 -62.36 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: 0.26 Total: 15.52 kcal Atomic # 6 Polarization: -45.73 SS G_CDS: 3.42 Total: -42.30 kcal Atomic # 7 Polarization: -81.63 SS G_CDS: -1.79 Total: -83.42 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Total: -66.28 3.92 -62.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172476833.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.761 kcal (2) G-P(sol) polarization free energy of solvation -66.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds