Wall clock time and date at job start Sun Mar 29 2020 21:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 C 1.53004 * 109.47236 * 184.99998 * 4 2 1 6 6 C 1.50703 * 109.47376 * 180.02562 * 5 4 2 7 7 H 1.07998 * 119.99776 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00099 * 179.97438 * 6 5 4 9 9 N 1.31508 * 119.99882 * 179.97438 * 8 6 5 10 10 Si 1.86800 * 119.99917 * 0.02562 * 8 6 5 11 11 H 1.48503 * 109.47230 * 89.99538 * 10 8 6 12 12 H 1.48498 * 109.47066 * 210.00161 * 10 8 6 13 13 H 1.48502 * 109.47115 * 329.99512 * 10 8 6 14 14 N 1.46899 * 109.47394 * 239.99962 * 2 1 3 15 15 C 1.46897 * 111.00355 * 84.99974 * 14 2 1 16 16 C 1.52994 * 109.47637 * 180.02562 * 15 14 2 17 17 C 1.53784 * 113.61443 * 274.13938 * 16 15 14 18 18 C 1.53948 * 87.02103 * 220.04636 * 17 16 15 19 19 C 1.53775 * 113.61557 * 176.53121 * 16 15 14 20 20 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 21 21 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 22 22 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 23 23 H 1.09001 * 109.47630 * 305.00128 * 4 2 1 24 24 H 1.09004 * 109.47346 * 65.00258 * 4 2 1 25 25 H 1.09001 * 109.46917 * 300.00567 * 5 4 2 26 26 H 1.09004 * 109.46741 * 59.99889 * 5 4 2 27 27 H 0.97004 * 119.99997 * 180.02562 * 9 8 6 28 28 H 1.00901 * 110.99869 * 321.04664 * 14 2 1 29 29 H 1.09006 * 109.46948 * 300.00869 * 15 14 2 30 30 H 1.09006 * 109.47033 * 59.99701 * 15 14 2 31 31 H 1.09005 * 112.84915 * 45.33052 * 16 15 14 32 32 H 1.08999 * 113.61511 * 334.56737 * 17 16 15 33 33 H 1.09001 * 113.61482 * 105.46870 * 17 16 15 34 34 H 1.09011 * 113.53915 * 270.81470 * 18 17 16 35 35 H 1.08994 * 113.67450 * 139.93082 * 18 17 16 36 36 H 1.09008 * 113.61291 * 254.52605 * 19 16 15 37 37 H 1.08993 * 113.61703 * 25.34597 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.6133 1.3138 6 6 4.0672 -1.3242 2.5440 7 1 3.3687 -1.8053 3.2127 8 6 5.4185 -1.3614 2.8152 9 7 5.8567 -1.9814 3.8890 10 14 6.6265 -0.5299 1.6582 11 1 6.8320 0.8775 2.0850 12 1 7.9234 -1.2525 1.6939 13 1 6.0845 -0.5539 0.2759 14 7 2.0198 -0.6925 -1.1994 15 6 2.0826 0.2225 -2.3469 16 6 2.5952 -0.5332 -3.5744 17 6 4.1292 -0.5835 -3.6707 18 6 3.9614 -0.3571 -5.1842 19 6 2.6187 0.3168 -4.8557 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 1.6053 -0.2617 2.1370 24 1 1.7516 -1.7715 1.2056 25 1 3.9994 -1.0728 0.4261 26 1 3.8531 0.4370 1.3574 27 1 6.8074 -2.0072 4.0801 28 1 1.4496 -1.4979 -1.4100 29 1 1.0872 0.6163 -2.5525 30 1 2.7590 1.0462 -2.1182 31 1 2.1176 -1.5045 -3.7035 32 1 4.6261 0.2404 -3.1584 33 1 4.5509 -1.5563 -3.4179 34 1 3.8585 -1.2808 -5.7538 35 1 4.6990 0.3235 -5.6093 36 1 1.8227 0.0697 -5.5583 37 1 2.7003 1.3874 -4.6680 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172476858.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:56 Heat of formation + Delta-G solvation = -5.074106 kcal Electronic energy + Delta-G solvation = -14204.314878 eV Core-core repulsion = 11981.207834 eV Total energy + Delta-G solvation = -2223.107044 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.98255 -36.83188 -33.16364 -31.51956 -29.49233 -26.62097 -25.50797 -25.13990 -22.19836 -21.02064 -19.99285 -19.10309 -16.54085 -15.74271 -15.25208 -15.05560 -14.24804 -14.05528 -13.58873 -12.87384 -12.59309 -12.54295 -12.39769 -12.36854 -11.83017 -11.65575 -11.33060 -11.23883 -10.88543 -10.59043 -10.43381 -10.18865 -10.05072 -9.77160 -9.58473 -9.40430 -8.96161 -8.39580 -7.91480 -5.91133 -3.86809 3.41128 3.47956 3.56993 4.32835 4.59135 4.66908 4.74299 4.86910 5.02707 5.28381 5.43474 5.44852 5.51586 5.56341 5.63812 5.68467 5.73468 5.78862 5.85689 6.02303 6.06589 6.18838 6.23586 6.31737 6.35202 6.54058 6.61381 6.77037 7.15857 7.42735 7.57361 7.76330 7.81676 7.98448 8.69749 9.15294 9.73381 11.22825 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.025194 B = 0.008459 C = 0.006603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.093035 B = 3309.126757 C = 4239.520969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.080 3.920 3 H 0.070 0.930 4 C -0.090 4.090 5 C -0.006 4.006 6 C -0.516 4.516 7 H 0.067 0.933 8 C 0.063 3.937 9 N -0.911 5.911 10 Si 0.879 3.121 11 H -0.281 1.281 12 H -0.291 1.291 13 H -0.260 1.260 14 N -0.674 5.674 15 C 0.070 3.930 16 C -0.106 4.106 17 C -0.127 4.127 18 C -0.146 4.146 19 C -0.137 4.137 20 H 0.054 0.946 21 H 0.059 0.941 22 H 0.043 0.957 23 H 0.051 0.949 24 H 0.052 0.948 25 H 0.032 0.968 26 H 0.001 0.999 27 H 0.260 0.740 28 H 0.335 0.665 29 H 0.022 0.978 30 H 0.069 0.931 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.064 4.830 -16.579 19.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.029 4.029 3 H 0.088 0.912 4 C -0.128 4.128 5 C -0.044 4.044 6 C -0.554 4.554 7 H 0.086 0.914 8 C -0.137 4.137 9 N -0.550 5.550 10 Si 0.707 3.293 11 H -0.207 1.207 12 H -0.217 1.217 13 H -0.184 1.184 14 N -0.304 5.304 15 C -0.060 4.060 16 C -0.125 4.125 17 C -0.164 4.164 18 C -0.183 4.183 19 C -0.175 4.175 20 H 0.073 0.927 21 H 0.078 0.922 22 H 0.063 0.937 23 H 0.070 0.930 24 H 0.071 0.929 25 H 0.050 0.950 26 H 0.019 0.981 27 H 0.070 0.930 28 H 0.153 0.847 29 H 0.040 0.960 30 H 0.088 0.912 31 H 0.105 0.895 32 H 0.099 0.901 33 H 0.087 0.913 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.233 4.870 -16.317 18.501 hybrid contribution -0.245 0.501 -0.631 0.842 sum -7.478 5.372 -16.949 19.288 Atomic orbital electron populations 1.22514 0.98423 1.01646 1.01276 1.21765 0.91217 0.98222 0.91722 0.91196 1.21449 0.98950 0.99017 0.93368 1.19471 0.91567 0.95752 0.97567 1.21278 0.92793 1.33815 1.07487 0.91447 1.25025 0.98452 0.95136 0.95069 1.69932 1.14379 1.44208 1.26529 0.86774 0.80377 0.79414 0.82783 1.20692 1.21736 1.18435 1.60520 1.57594 1.09132 1.03125 1.21972 0.98458 0.95525 0.90016 1.22515 0.97160 0.99074 0.93745 1.22886 0.95928 1.02644 0.94949 1.22874 0.97502 1.00536 0.97412 1.22918 0.97657 0.99534 0.97355 0.92683 0.92199 0.93749 0.93019 0.92905 0.94966 0.98056 0.93014 0.84700 0.95991 0.91243 0.89510 0.90111 0.91328 0.90536 0.91814 0.91954 0.90306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.38 9.16 37.16 0.34 -2.04 16 2 C 0.08 1.31 2.59 -67.71 -0.18 1.13 16 3 H 0.07 1.17 7.80 -51.93 -0.40 0.76 16 4 C -0.09 -1.83 4.83 -26.73 -0.13 -1.96 16 5 C -0.01 -0.15 3.93 -27.88 -0.11 -0.26 16 6 C -0.52 -15.33 9.66 -34.44 -0.33 -15.66 16 7 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 8 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 9 N -0.91 -29.13 13.96 55.43 0.77 -28.36 16 10 Si 0.88 22.76 27.47 -169.99 -4.67 18.09 16 11 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 12 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 13 H -0.26 -6.53 6.54 56.52 0.37 -6.16 16 14 N -0.67 -10.43 5.70 -106.73 -0.61 -11.04 16 15 C 0.07 0.92 5.31 -3.83 -0.02 0.90 16 16 C -0.11 -1.26 3.89 -89.81 -0.35 -1.61 16 17 C -0.13 -1.62 7.65 -25.83 -0.20 -1.81 16 18 C -0.15 -1.50 8.09 -25.83 -0.21 -1.71 16 19 C -0.14 -1.37 7.65 -25.92 -0.20 -1.57 16 20 H 0.05 0.70 8.13 -51.93 -0.42 0.28 16 21 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 22 H 0.04 0.53 7.45 -51.93 -0.39 0.14 16 23 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 24 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 25 H 0.03 0.83 6.81 -51.93 -0.35 0.47 16 26 H 0.00 0.03 7.57 -51.93 -0.39 -0.36 16 27 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 28 H 0.34 4.73 8.47 -39.29 -0.33 4.40 16 29 H 0.02 0.27 7.44 -51.93 -0.39 -0.12 16 30 H 0.07 0.99 7.79 -51.93 -0.40 0.58 16 31 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.08 1.11 7.92 -51.93 -0.41 0.70 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.08 0.73 8.14 -51.92 -0.42 0.30 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 37 H 0.08 0.77 8.10 -51.93 -0.42 0.35 16 LS Contribution 295.01 15.07 4.45 4.45 Total: -1.00 -31.41 295.01 -8.42 -39.83 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -6.88 Total: -0.21 kcal Atomic # 6 Polarization: -21.29 SS G_CDS: -1.48 Total: -22.76 kcal Atomic # 7 Polarization: -39.56 SS G_CDS: 0.16 Total: -39.39 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -4.67 Total: 18.09 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -31.41 -8.42 -39.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172476858.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.754 kcal (2) G-P(sol) polarization free energy of solvation -31.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds