Wall clock time and date at job start Sun Mar 29 2020 21:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 C 1.53004 * 109.47236 * 184.99998 * 4 2 1 6 6 C 1.50703 * 109.47376 * 180.02562 * 5 4 2 7 7 H 1.07998 * 119.99776 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00099 * 179.97438 * 6 5 4 9 9 N 1.31508 * 119.99882 * 179.97438 * 8 6 5 10 10 Si 1.86800 * 119.99917 * 0.02562 * 8 6 5 11 11 H 1.48503 * 109.47230 * 89.99538 * 10 8 6 12 12 H 1.48498 * 109.47066 * 210.00161 * 10 8 6 13 13 H 1.48502 * 109.47115 * 329.99512 * 10 8 6 14 14 N 1.46899 * 109.47394 * 239.99962 * 2 1 3 15 15 C 1.46897 * 111.00355 * 84.99974 * 14 2 1 16 16 C 1.52994 * 109.47637 * 180.02562 * 15 14 2 17 17 C 1.53784 * 113.61443 * 274.13938 * 16 15 14 18 18 C 1.53948 * 87.02103 * 220.04636 * 17 16 15 19 19 C 1.53775 * 113.61557 * 176.53121 * 16 15 14 20 20 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 21 21 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 22 22 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 23 23 H 1.09001 * 109.47630 * 305.00128 * 4 2 1 24 24 H 1.09004 * 109.47346 * 65.00258 * 4 2 1 25 25 H 1.09001 * 109.46917 * 300.00567 * 5 4 2 26 26 H 1.09004 * 109.46741 * 59.99889 * 5 4 2 27 27 H 0.97004 * 119.99997 * 180.02562 * 9 8 6 28 28 H 1.00901 * 110.99869 * 321.04664 * 14 2 1 29 29 H 1.09006 * 109.46948 * 300.00869 * 15 14 2 30 30 H 1.09006 * 109.47033 * 59.99701 * 15 14 2 31 31 H 1.09005 * 112.84915 * 45.33052 * 16 15 14 32 32 H 1.08999 * 113.61511 * 334.56737 * 17 16 15 33 33 H 1.09001 * 113.61482 * 105.46870 * 17 16 15 34 34 H 1.09011 * 113.53915 * 270.81470 * 18 17 16 35 35 H 1.08994 * 113.67450 * 139.93082 * 18 17 16 36 36 H 1.09008 * 113.61291 * 254.52605 * 19 16 15 37 37 H 1.08993 * 113.61703 * 25.34597 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.6133 1.3138 6 6 4.0672 -1.3242 2.5440 7 1 3.3687 -1.8053 3.2127 8 6 5.4185 -1.3614 2.8152 9 7 5.8567 -1.9814 3.8890 10 14 6.6265 -0.5299 1.6582 11 1 6.8320 0.8775 2.0850 12 1 7.9234 -1.2525 1.6939 13 1 6.0845 -0.5539 0.2759 14 7 2.0198 -0.6925 -1.1994 15 6 2.0826 0.2225 -2.3469 16 6 2.5952 -0.5332 -3.5744 17 6 4.1292 -0.5835 -3.6707 18 6 3.9614 -0.3571 -5.1842 19 6 2.6187 0.3168 -4.8557 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 1.6053 -0.2617 2.1370 24 1 1.7516 -1.7715 1.2056 25 1 3.9994 -1.0728 0.4261 26 1 3.8531 0.4370 1.3574 27 1 6.8074 -2.0072 4.0801 28 1 1.4496 -1.4979 -1.4100 29 1 1.0872 0.6163 -2.5525 30 1 2.7590 1.0462 -2.1182 31 1 2.1176 -1.5045 -3.7035 32 1 4.6261 0.2404 -3.1584 33 1 4.5509 -1.5563 -3.4179 34 1 3.8585 -1.2808 -5.7538 35 1 4.6990 0.3235 -5.6093 36 1 1.8227 0.0697 -5.5583 37 1 2.7003 1.3874 -4.6680 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172476858.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:56 Heat of formation + Delta-G solvation = -24.692817 kcal Electronic energy + Delta-G solvation = -14205.165609 eV Core-core repulsion = 11981.207834 eV Total energy + Delta-G solvation = -2223.957776 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.92466 -38.10766 -35.21891 -33.23661 -31.04816 -27.64542 -27.00630 -26.37549 -23.28568 -22.67340 -21.50987 -20.09483 -18.81146 -16.79533 -16.39083 -16.22689 -16.18761 -15.32081 -14.91531 -14.50797 -14.23937 -13.86429 -13.75316 -13.28014 -13.22765 -12.98640 -12.84503 -12.64322 -12.23008 -12.02279 -11.69107 -11.49594 -11.42057 -11.35682 -11.21384 -11.05443 -10.86451 -10.72149 -9.08705 -8.26786 -6.28563 1.34635 1.37674 1.52594 2.39051 3.09493 3.26349 3.79932 3.87124 3.94977 4.04176 4.09453 4.31369 4.45154 4.57922 4.61740 4.71122 4.74938 4.90215 4.91668 4.93970 5.00333 5.04793 5.07156 5.13229 5.20651 5.24547 5.38201 5.44927 5.60161 5.66655 5.71266 5.79216 6.30485 6.34825 6.66546 6.80145 7.35819 8.90437 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.025194 B = 0.008459 C = 0.006603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.093035 B = 3309.126757 C = 4239.520969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.089 3.911 3 H 0.067 0.933 4 C -0.085 4.085 5 C 0.002 3.998 6 C -0.529 4.529 7 H 0.028 0.972 8 C 0.002 3.998 9 N -0.956 5.956 10 Si 0.951 3.049 11 H -0.269 1.269 12 H -0.285 1.285 13 H -0.248 1.248 14 N -0.693 5.693 15 C 0.074 3.926 16 C -0.107 4.107 17 C -0.141 4.141 18 C -0.138 4.138 19 C -0.126 4.126 20 H 0.059 0.941 21 H 0.062 0.938 22 H 0.064 0.936 23 H 0.047 0.953 24 H 0.044 0.956 25 H 0.027 0.973 26 H 0.003 0.997 27 H 0.264 0.736 28 H 0.343 0.657 29 H 0.039 0.961 30 H 0.057 0.943 31 H 0.091 0.909 32 H 0.066 0.934 33 H 0.051 0.949 34 H 0.086 0.914 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.669 6.033 -19.100 21.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.021 4.021 3 H 0.085 0.915 4 C -0.123 4.123 5 C -0.035 4.035 6 C -0.568 4.568 7 H 0.047 0.953 8 C -0.194 4.194 9 N -0.597 5.597 10 Si 0.775 3.225 11 H -0.194 1.194 12 H -0.210 1.210 13 H -0.171 1.171 14 N -0.324 5.324 15 C -0.055 4.055 16 C -0.125 4.125 17 C -0.179 4.179 18 C -0.175 4.175 19 C -0.164 4.164 20 H 0.078 0.922 21 H 0.081 0.919 22 H 0.083 0.917 23 H 0.066 0.934 24 H 0.063 0.937 25 H 0.045 0.955 26 H 0.021 0.979 27 H 0.073 0.927 28 H 0.161 0.839 29 H 0.058 0.942 30 H 0.075 0.925 31 H 0.109 0.891 32 H 0.085 0.915 33 H 0.070 0.930 34 H 0.104 0.896 35 H 0.089 0.911 36 H 0.097 0.903 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -7.860 6.077 -18.849 21.307 hybrid contribution -0.075 0.059 0.240 0.258 sum -7.936 6.136 -18.609 21.140 Atomic orbital electron populations 1.22382 0.95674 1.02359 1.02423 1.21526 0.93303 0.97144 0.90110 0.91496 1.21349 0.95884 0.99249 0.95857 1.19354 0.94667 0.94748 0.94736 1.21667 0.92582 1.33861 1.08642 0.95345 1.26004 1.00680 0.95871 0.96853 1.70081 1.15127 1.45871 1.28635 0.85638 0.77594 0.78596 0.80711 1.19391 1.21045 1.17141 1.60424 1.58237 1.10042 1.03730 1.21959 0.99135 0.94889 0.89536 1.22545 0.96159 0.99667 0.94155 1.22937 0.96662 1.01176 0.97109 1.22853 0.97928 1.01206 0.95508 1.22871 0.97839 0.99382 0.96295 0.92219 0.91912 0.91719 0.93449 0.93729 0.95476 0.97894 0.92678 0.83867 0.94246 0.92473 0.89058 0.91543 0.92969 0.89586 0.91107 0.90307 0.89923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.04 9.16 71.98 0.66 -3.38 16 2 C 0.09 2.74 2.59 44.92 0.12 2.86 16 3 H 0.07 2.11 7.80 -2.39 -0.02 2.09 16 4 C -0.09 -3.45 4.83 30.59 0.15 -3.30 16 5 C 0.00 0.12 3.93 29.85 0.12 0.24 16 6 C -0.53 -32.26 9.66 25.60 0.25 -32.01 16 7 H 0.03 1.89 7.99 -2.91 -0.02 1.86 16 8 C 0.00 0.11 5.47 84.66 0.46 0.57 16 9 N -0.96 -62.49 13.96 21.45 0.30 -62.19 16 10 Si 0.95 47.11 27.47 68.60 1.88 48.99 16 11 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 12 H -0.28 -13.73 7.11 99.48 0.71 -13.02 16 13 H -0.25 -11.69 6.54 99.48 0.65 -11.04 16 14 N -0.69 -20.25 5.70 -491.57 -2.80 -23.06 16 15 C 0.07 1.77 5.31 86.30 0.46 2.23 16 16 C -0.11 -2.28 3.89 -10.27 -0.04 -2.32 16 17 C -0.14 -3.43 7.65 31.18 0.24 -3.19 16 18 C -0.14 -2.50 8.09 31.18 0.25 -2.24 16 19 C -0.13 -2.13 7.65 31.12 0.24 -1.89 16 20 H 0.06 1.37 8.13 -2.39 -0.02 1.35 16 21 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 22 H 0.06 1.30 7.45 -2.39 -0.02 1.29 16 23 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 24 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 25 H 0.03 1.37 6.81 -2.39 -0.02 1.36 16 26 H 0.00 0.13 7.57 -2.39 -0.02 0.12 16 27 H 0.26 16.10 8.31 -92.71 -0.77 15.33 16 28 H 0.34 9.02 8.47 -89.69 -0.76 8.26 16 29 H 0.04 0.82 7.44 -2.38 -0.02 0.81 16 30 H 0.06 1.52 7.79 -2.38 -0.02 1.50 16 31 H 0.09 1.88 8.14 -2.38 -0.02 1.86 16 32 H 0.07 1.78 7.92 -2.39 -0.02 1.76 16 33 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 35 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 37 H 0.08 1.35 8.10 -2.39 -0.02 1.33 16 Total: -1.00 -68.15 295.01 2.47 -65.68 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: 0.19 Total: 13.02 kcal Atomic # 6 Polarization: -45.34 SS G_CDS: 2.90 Total: -42.44 kcal Atomic # 7 Polarization: -82.74 SS G_CDS: -2.50 Total: -85.25 kcal Atomic # 14 Polarization: 47.11 SS G_CDS: 1.88 Total: 48.99 kcal Total: -68.15 2.47 -65.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172476858.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.987 kcal (2) G-P(sol) polarization free energy of solvation -68.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds