Wall clock time and date at job start Sun Mar 29 2020 21:41:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.46862 * 2 1 4 4 C 1.53002 * 109.47392 * 240.00135 * 2 1 3 5 5 C 1.53000 * 109.47379 * 174.99973 * 4 2 1 6 6 C 1.50695 * 109.47339 * 180.02562 * 5 4 2 7 7 H 1.08006 * 119.99588 * 359.97438 * 6 5 4 8 8 C 1.37871 * 120.00492 * 179.97438 * 6 5 4 9 9 N 1.31515 * 119.99769 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 120.00469 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47100 * 89.99932 * 10 8 6 12 12 H 1.48501 * 109.47441 * 210.00167 * 10 8 6 13 13 H 1.48501 * 109.46731 * 330.00141 * 10 8 6 14 14 N 1.46906 * 109.47378 * 119.99897 * 2 1 3 15 15 C 1.46894 * 111.00072 * 275.00214 * 14 2 1 16 16 C 1.52994 * 109.47435 * 179.97438 * 15 14 2 17 17 C 1.53778 * 113.61590 * 274.14173 * 16 15 14 18 18 C 1.53960 * 87.02025 * 220.04433 * 17 16 15 19 19 C 1.53780 * 113.61831 * 176.52532 * 16 15 14 20 20 H 1.09004 * 109.46998 * 299.99522 * 1 2 3 21 21 H 1.08992 * 109.47715 * 60.00053 * 1 2 3 22 22 H 1.09004 * 109.46862 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.46957 * 294.99695 * 4 2 1 24 24 H 1.09000 * 109.47241 * 54.99615 * 4 2 1 25 25 H 1.09006 * 109.46717 * 300.00085 * 5 4 2 26 26 H 1.09000 * 109.47227 * 59.99633 * 5 4 2 27 27 H 0.97006 * 120.00368 * 179.97438 * 9 8 6 28 28 H 1.00901 * 110.99872 * 151.04898 * 14 2 1 29 29 H 1.08998 * 109.47278 * 299.99867 * 15 14 2 30 30 H 1.09000 * 109.47351 * 59.99975 * 15 14 2 31 31 H 1.09008 * 112.84679 * 45.33213 * 16 15 14 32 32 H 1.09001 * 113.61571 * 334.55927 * 17 16 15 33 33 H 1.09001 * 113.61879 * 105.46530 * 17 16 15 34 34 H 1.08998 * 113.53327 * 270.81061 * 18 17 16 35 35 H 1.08997 * 113.66905 * 139.93008 * 18 17 16 36 36 H 1.08992 * 113.62037 * 254.53174 * 19 16 15 37 37 H 1.08995 * 113.61285 * 25.35360 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6132 -1.3137 6 6 4.0671 -1.3231 -2.5444 7 1 3.3686 -1.8035 -3.2136 8 6 5.4183 -1.3591 -2.8164 9 7 6.2689 -0.7745 -2.0013 10 14 6.0410 -2.2396 -4.3416 11 1 6.0903 -1.2855 -5.4785 12 1 7.4026 -2.7733 -4.0840 13 1 5.1251 -3.3600 -4.6749 14 7 2.0197 -0.6925 1.1995 15 6 2.0824 0.2226 2.3469 16 6 2.5951 -0.5331 3.5745 17 6 1.4888 -1.2614 4.3559 18 6 2.2077 -0.8073 5.6394 19 6 2.7788 0.3581 4.8142 20 1 -0.3633 0.5138 0.8901 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 1.7517 -1.7715 -1.2056 24 1 1.6054 -0.2618 -2.1370 25 1 3.8531 0.4371 -1.3573 26 1 3.9995 -1.0727 -0.4260 27 1 7.2196 -0.8001 -2.1924 28 1 2.9173 -1.1204 1.0287 29 1 2.7588 1.0462 2.1182 30 1 1.0871 0.6162 2.5526 31 1 3.4596 -1.1597 3.3552 32 1 0.5008 -0.8188 4.2290 33 1 1.4913 -2.3418 4.2119 34 1 2.9658 -1.5099 5.9854 35 1 1.5298 -0.4902 6.4318 36 1 3.8211 0.5831 5.0396 37 1 2.1452 1.2450 4.8121 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172476859.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:57 Heat of formation + Delta-G solvation = -27.228590 kcal Electronic energy + Delta-G solvation = -14059.222069 eV Core-core repulsion = 11835.154334 eV Total energy + Delta-G solvation = -2224.067735 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.93335 -38.14765 -35.23434 -33.00614 -30.89756 -27.83014 -26.88360 -26.37830 -23.52465 -22.83405 -21.16080 -20.13667 -18.52610 -16.84535 -16.58950 -16.54342 -16.10424 -15.42073 -14.56393 -14.49404 -14.32393 -13.96012 -13.27797 -13.24942 -13.15434 -12.85310 -12.75996 -12.62858 -12.40987 -12.23865 -12.00295 -11.59365 -11.43060 -11.30897 -11.08283 -10.99636 -10.86641 -10.55976 -9.28152 -8.21402 -6.32321 1.39072 1.40268 1.51647 2.40104 3.11489 3.24607 3.79418 3.85764 3.94073 4.07776 4.10287 4.32355 4.49066 4.56607 4.59622 4.74282 4.77696 4.90102 4.92144 4.95882 5.01484 5.06286 5.08697 5.12853 5.19687 5.23144 5.42799 5.45681 5.52807 5.65543 5.70259 5.82831 6.23508 6.27853 6.45816 6.84252 7.37053 8.90183 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.035632 B = 0.006130 C = 0.005495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.627868 B = 4566.379164 C = 5094.098496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.084 3.916 3 H 0.024 0.976 4 C -0.102 4.102 5 C 0.027 3.973 6 C -0.543 4.543 7 H 0.059 0.941 8 C 0.001 3.999 9 N -0.933 5.933 10 Si 0.964 3.036 11 H -0.272 1.272 12 H -0.282 1.282 13 H -0.263 1.263 14 N -0.686 5.686 15 C 0.072 3.928 16 C -0.117 4.117 17 C -0.122 4.122 18 C -0.135 4.135 19 C -0.133 4.133 20 H 0.059 0.941 21 H 0.061 0.939 22 H 0.058 0.942 23 H 0.055 0.945 24 H 0.057 0.943 25 H -0.018 1.018 26 H -0.002 1.002 27 H 0.263 0.737 28 H 0.335 0.665 29 H 0.011 0.989 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.084 0.916 33 H 0.059 0.941 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.064 0.936 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.648 1.374 11.565 15.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.026 4.026 3 H 0.042 0.958 4 C -0.139 4.139 5 C -0.010 4.010 6 C -0.581 4.581 7 H 0.077 0.923 8 C -0.197 4.197 9 N -0.573 5.573 10 Si 0.789 3.211 11 H -0.198 1.198 12 H -0.207 1.207 13 H -0.188 1.188 14 N -0.319 5.319 15 C -0.057 4.057 16 C -0.135 4.135 17 C -0.160 4.160 18 C -0.173 4.173 19 C -0.171 4.171 20 H 0.078 0.922 21 H 0.080 0.920 22 H 0.077 0.923 23 H 0.074 0.926 24 H 0.075 0.925 25 H 0.000 1.000 26 H 0.016 0.984 27 H 0.072 0.928 28 H 0.155 0.845 29 H 0.029 0.971 30 H 0.098 0.902 31 H 0.090 0.910 32 H 0.102 0.898 33 H 0.078 0.922 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.083 0.917 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -10.101 1.157 11.755 15.541 hybrid contribution 1.661 0.261 -1.125 2.023 sum -8.440 1.418 10.630 13.647 Atomic orbital electron populations 1.21691 0.93066 1.02134 1.01481 1.21561 0.96539 0.94805 0.89646 0.95782 1.21646 0.96114 0.99843 0.96342 1.19004 0.92198 0.94354 0.95471 1.21693 0.92599 1.34587 1.09229 0.92325 1.25964 0.97314 0.96320 1.00097 1.70095 1.02758 1.45489 1.39004 0.85458 0.77605 0.78950 0.79108 1.19796 1.20703 1.18754 1.60714 1.33469 1.33023 1.04681 1.22015 1.00035 0.93240 0.90444 1.22560 0.99185 0.98463 0.93334 1.22863 0.97664 0.99993 0.95469 1.22828 1.00060 0.97752 0.96611 1.22928 1.01459 0.97652 0.95098 0.92231 0.91954 0.92326 0.92639 0.92458 0.99970 0.98358 0.92816 0.84530 0.97064 0.90230 0.90975 0.89778 0.92200 0.90182 0.90153 0.91717 0.89356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.57 9.41 71.98 0.68 -2.89 16 2 C 0.08 3.00 2.65 44.91 0.12 3.11 16 3 H 0.02 0.91 7.80 -2.38 -0.02 0.89 16 4 C -0.10 -4.31 4.74 30.60 0.15 -4.16 16 5 C 0.03 1.44 4.80 29.85 0.14 1.58 16 6 C -0.54 -31.45 9.11 25.60 0.23 -31.21 16 7 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 8 C 0.00 0.04 5.46 84.65 0.46 0.50 16 9 N -0.93 -57.36 13.29 21.44 0.28 -57.07 16 10 Si 0.96 44.79 29.54 68.60 2.03 46.82 16 11 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 12 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 13 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 14 N -0.69 -23.83 6.31 -491.59 -3.10 -26.93 16 15 C 0.07 2.11 5.31 86.30 0.46 2.57 16 16 C -0.12 -3.02 3.89 -10.27 -0.04 -3.06 16 17 C -0.12 -2.70 7.65 31.18 0.24 -2.46 16 18 C -0.14 -2.50 8.09 31.18 0.25 -2.25 16 19 C -0.13 -2.79 7.65 31.12 0.24 -2.55 16 20 H 0.06 1.49 7.45 -2.39 -0.02 1.48 16 21 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 22 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 23 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 24 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 25 H -0.02 -1.06 8.14 -2.38 -0.02 -1.08 16 26 H 0.00 -0.10 6.43 -2.39 -0.02 -0.12 16 27 H 0.26 15.19 8.31 -92.70 -0.77 14.41 16 28 H 0.34 13.37 6.47 -89.69 -0.58 12.79 16 29 H 0.01 0.36 8.06 -2.39 -0.02 0.34 16 30 H 0.08 2.10 7.17 -2.39 -0.02 2.08 16 31 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 32 H 0.08 1.74 7.92 -2.39 -0.02 1.73 16 33 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.09 1.67 8.10 -2.39 -0.02 1.65 16 Total: -1.00 -62.39 296.07 2.56 -59.83 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: 0.43 Total: 18.17 kcal Atomic # 6 Polarization: -43.74 SS G_CDS: 2.93 Total: -40.81 kcal Atomic # 7 Polarization: -81.18 SS G_CDS: -2.82 Total: -84.00 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -62.39 2.56 -59.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172476859.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.597 kcal (2) G-P(sol) polarization free energy of solvation -62.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds