Wall clock time and date at job start Sun Mar 29 2020 21:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08994 * 109.46546 * 2 1 4 4 C 1.52996 * 109.46855 * 120.00024 * 2 1 3 5 5 C 1.53003 * 109.46840 * 185.00426 * 4 2 1 6 6 C 1.50700 * 109.47027 * 180.02562 * 5 4 2 7 7 H 1.07999 * 120.00368 * 359.97438 * 6 5 4 8 8 C 1.37874 * 119.99964 * 179.97438 * 6 5 4 9 9 N 1.31518 * 120.00063 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 120.00153 * 179.97438 * 8 6 5 11 11 H 1.48493 * 109.47103 * 59.99529 * 10 8 6 12 12 H 1.48497 * 109.47100 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.46956 * 299.99470 * 10 8 6 14 14 N 1.46896 * 109.46922 * 239.99880 * 2 1 3 15 15 C 1.46900 * 110.99853 * 103.71152 * 14 2 1 16 16 C 1.53002 * 112.90930 * 291.91278 * 15 14 2 17 17 C 1.53781 * 113.61579 * 63.16823 * 15 14 2 18 18 C 1.53777 * 87.08276 * 139.97933 * 17 15 14 19 19 C 1.53784 * 87.08224 * 334.56784 * 18 17 15 20 20 H 1.08998 * 109.47357 * 295.15031 * 1 2 3 21 21 H 1.08999 * 109.47311 * 55.15206 * 1 2 3 22 22 H 1.09000 * 109.46787 * 175.15055 * 1 2 3 23 23 H 1.09007 * 109.47181 * 304.99847 * 4 2 1 24 24 H 1.09002 * 109.47344 * 65.00080 * 4 2 1 25 25 H 1.09007 * 109.46760 * 299.99678 * 5 4 2 26 26 H 1.08993 * 109.47232 * 59.99757 * 5 4 2 27 27 H 0.96995 * 120.00096 * 180.02562 * 9 8 6 28 28 H 1.00897 * 110.99966 * 227.66264 * 14 2 1 29 29 H 1.08997 * 109.47125 * 196.09229 * 16 15 14 30 30 H 1.09000 * 109.47141 * 316.09779 * 16 15 14 31 31 H 1.09004 * 109.46645 * 76.09732 * 16 15 14 32 32 H 1.09000 * 113.61158 * 254.52938 * 17 15 14 33 33 H 1.08998 * 113.61235 * 25.43144 * 17 15 14 34 34 H 1.09001 * 113.61230 * 89.11478 * 18 17 15 35 35 H 1.09001 * 113.61819 * 220.01423 * 18 17 15 36 36 H 1.08992 * 113.61205 * 270.88323 * 19 18 17 37 37 H 1.08996 * 113.61119 * 139.98012 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.6132 1.3137 6 6 4.0672 -1.3241 2.5439 7 1 3.3688 -1.8046 3.2130 8 6 5.4185 -1.3612 2.8151 9 7 6.2691 -0.7766 2.0000 10 14 6.0412 -2.2419 4.3403 11 1 5.6477 -3.6725 4.2812 12 1 7.5213 -2.1381 4.4022 13 1 5.4497 -1.6154 5.5498 14 7 2.0197 -0.6925 -1.1994 15 6 2.5016 0.2673 -2.2016 16 6 1.3779 1.1107 -2.8073 17 6 3.7084 1.0960 -1.7306 18 6 4.2765 0.9301 -3.1499 19 6 3.4383 -0.3553 -3.2504 20 1 -0.3634 0.4367 0.9302 21 1 -0.3634 0.5872 -0.8434 22 1 -0.3633 -1.0240 -0.0869 23 1 1.6053 -0.2617 2.1370 24 1 1.7516 -1.7715 1.2056 25 1 3.9995 -1.0727 0.4260 26 1 3.8531 0.4370 1.3574 27 1 7.2198 -0.8030 2.1907 28 1 2.7383 -1.3602 -0.9634 29 1 1.7328 1.5863 -3.7215 30 1 0.5266 0.4701 -3.0377 31 1 1.0736 1.8767 -2.0939 32 1 3.4586 2.1265 -1.4780 33 1 4.3033 0.6029 -0.9618 34 1 3.9612 1.7122 -3.8406 35 1 5.3518 0.7530 -3.1719 36 1 3.9593 -1.2450 -2.8971 37 1 2.9705 -0.4963 -4.2247 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172480242.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:47 Heat of formation + Delta-G solvation = -6.612744 kcal Electronic energy + Delta-G solvation = -14747.013106 eV Core-core repulsion = 12523.839342 eV Total energy + Delta-G solvation = -2223.173765 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.52336 -35.77797 -32.95006 -30.42227 -28.89699 -28.27087 -25.39221 -24.94220 -22.57791 -21.28970 -19.48685 -18.16402 -16.30063 -15.89358 -14.95597 -14.50482 -14.46755 -13.69640 -13.02035 -12.73981 -12.55038 -12.21794 -11.94990 -11.91252 -11.72617 -11.58524 -11.13771 -10.95299 -10.92485 -10.58901 -10.48143 -10.17859 -10.14926 -9.84523 -9.64338 -9.24890 -9.01334 -8.35425 -7.76951 -6.00895 -4.02929 3.32804 3.37133 3.39862 4.45490 4.60337 4.89409 5.02313 5.12892 5.19538 5.34923 5.60826 5.74114 5.80926 5.87900 5.94504 6.02819 6.12487 6.15451 6.19923 6.25458 6.27980 6.37686 6.42824 6.54814 6.61114 6.64002 6.85082 6.94744 7.12142 7.63559 7.65466 7.83520 7.96908 8.05293 8.42751 9.03463 9.61221 11.10021 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.034612 B = 0.008385 C = 0.007100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.772408 B = 3338.394003 C = 3942.546209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.084 3.916 3 H 0.048 0.952 4 C -0.123 4.123 5 C 0.024 3.976 6 C -0.521 4.521 7 H 0.054 0.946 8 C 0.058 3.942 9 N -0.895 5.895 10 Si 0.891 3.109 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.277 1.277 14 N -0.675 5.675 15 C 0.094 3.906 16 C -0.117 4.117 17 C -0.171 4.171 18 C -0.141 4.141 19 C -0.131 4.131 20 H 0.047 0.953 21 H 0.045 0.955 22 H 0.054 0.946 23 H 0.053 0.947 24 H 0.053 0.947 25 H 0.014 0.986 26 H 0.013 0.987 27 H 0.260 0.740 28 H 0.351 0.649 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.099 0.901 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.082 0.918 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.092 3.150 -8.903 11.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.026 4.026 3 H 0.066 0.934 4 C -0.162 4.162 5 C -0.013 4.013 6 C -0.559 4.559 7 H 0.072 0.928 8 C -0.143 4.143 9 N -0.534 5.534 10 Si 0.719 3.281 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.203 1.203 14 N -0.308 5.308 15 C 0.002 3.998 16 C -0.175 4.175 17 C -0.211 4.211 18 C -0.179 4.179 19 C -0.169 4.169 20 H 0.066 0.934 21 H 0.064 0.936 22 H 0.073 0.927 23 H 0.071 0.929 24 H 0.072 0.928 25 H 0.033 0.967 26 H 0.031 0.969 27 H 0.070 0.930 28 H 0.172 0.828 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.117 0.883 34 H 0.092 0.908 35 H 0.084 0.916 36 H 0.101 0.899 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.538 3.109 -9.198 12.292 hybrid contribution 1.376 -0.149 1.306 1.903 sum -6.162 2.960 -7.892 10.441 Atomic orbital electron populations 1.21848 0.96097 1.01450 0.99980 1.21539 0.94244 0.96935 0.89869 0.93355 1.21994 0.99818 0.99274 0.95066 1.19129 0.88681 0.96806 0.96724 1.21228 0.91933 1.34330 1.08458 0.92807 1.25011 0.97076 0.95606 0.96656 1.69943 1.02366 1.44074 1.37026 0.86677 0.77577 0.80269 0.83598 1.20254 1.21320 1.20293 1.60505 1.42124 1.16729 1.11406 1.22262 0.91843 0.92524 0.93161 1.21521 0.97703 0.98702 0.99591 1.23792 0.98974 1.00944 0.97366 1.22717 0.99671 0.97793 0.97694 1.23073 0.97355 0.97708 0.98719 0.93432 0.93604 0.92711 0.92868 0.92779 0.96735 0.96890 0.93012 0.82816 0.92695 0.91856 0.92808 0.92284 0.88304 0.90804 0.91565 0.89937 0.91711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 9.43 37.16 0.35 -1.71 16 2 C 0.08 1.48 2.14 -67.71 -0.14 1.33 16 3 H 0.05 0.90 6.84 -51.93 -0.36 0.54 16 4 C -0.12 -2.57 4.58 -26.73 -0.12 -2.69 16 5 C 0.02 0.60 4.10 -27.88 -0.11 0.48 16 6 C -0.52 -14.74 9.11 -34.44 -0.31 -15.06 16 7 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 8 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 9 N -0.89 -26.61 13.29 55.43 0.74 -25.88 16 10 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 13 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 14 N -0.67 -11.54 6.28 -92.23 -0.58 -12.12 16 15 C 0.09 1.44 1.10 -130.79 -0.14 1.30 16 16 C -0.12 -1.55 7.98 37.16 0.30 -1.25 16 17 C -0.17 -2.85 6.26 -25.92 -0.16 -3.01 16 18 C -0.14 -1.98 7.73 -25.92 -0.20 -2.18 16 19 C -0.13 -1.86 7.31 -25.92 -0.19 -2.05 16 20 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 21 H 0.04 0.64 7.01 -51.93 -0.36 0.28 16 22 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 23 H 0.05 1.10 8.14 -51.92 -0.42 0.68 16 24 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 25 H 0.01 0.38 6.13 -51.92 -0.32 0.06 16 26 H 0.01 0.35 8.09 -51.93 -0.42 -0.07 16 27 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 28 H 0.35 6.63 6.36 -39.29 -0.25 6.38 16 29 H 0.05 0.63 7.38 -51.93 -0.38 0.25 16 30 H 0.06 0.82 8.10 -51.93 -0.42 0.40 16 31 H 0.05 0.71 7.89 -51.93 -0.41 0.30 16 32 H 0.06 0.95 8.10 -51.93 -0.42 0.53 16 33 H 0.10 2.00 6.75 -51.93 -0.35 1.65 16 34 H 0.07 0.90 7.71 -51.93 -0.40 0.50 16 35 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.08 1.25 7.97 -51.93 -0.41 0.84 16 37 H 0.06 0.82 8.10 -51.93 -0.42 0.40 16 LS Contribution 288.83 15.07 4.35 4.35 Total: -1.00 -28.60 288.83 -7.94 -36.53 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -6.58 Total: 3.67 kcal Atomic # 6 Polarization: -22.44 SS G_CDS: -0.84 Total: -23.29 kcal Atomic # 7 Polarization: -38.16 SS G_CDS: 0.16 Total: -38.00 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -28.60 -7.94 -36.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172480242.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.919 kcal (2) G-P(sol) polarization free energy of solvation -28.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds