Wall clock time and date at job start Sun Mar 29 2020 21:41:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08994 * 109.46546 * 2 1 4 4 C 1.52996 * 109.46855 * 120.00024 * 2 1 3 5 5 C 1.53003 * 109.46840 * 185.00426 * 4 2 1 6 6 C 1.50700 * 109.47027 * 180.02562 * 5 4 2 7 7 H 1.07999 * 120.00368 * 359.97438 * 6 5 4 8 8 C 1.37874 * 119.99964 * 179.97438 * 6 5 4 9 9 N 1.31518 * 120.00063 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 120.00153 * 179.97438 * 8 6 5 11 11 H 1.48493 * 109.47103 * 59.99529 * 10 8 6 12 12 H 1.48497 * 109.47100 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.46956 * 299.99470 * 10 8 6 14 14 N 1.46896 * 109.46922 * 239.99880 * 2 1 3 15 15 C 1.46900 * 110.99853 * 103.71152 * 14 2 1 16 16 C 1.53002 * 112.90930 * 291.91278 * 15 14 2 17 17 C 1.53781 * 113.61579 * 63.16823 * 15 14 2 18 18 C 1.53777 * 87.08276 * 139.97933 * 17 15 14 19 19 C 1.53784 * 87.08224 * 334.56784 * 18 17 15 20 20 H 1.08998 * 109.47357 * 295.15031 * 1 2 3 21 21 H 1.08999 * 109.47311 * 55.15206 * 1 2 3 22 22 H 1.09000 * 109.46787 * 175.15055 * 1 2 3 23 23 H 1.09007 * 109.47181 * 304.99847 * 4 2 1 24 24 H 1.09002 * 109.47344 * 65.00080 * 4 2 1 25 25 H 1.09007 * 109.46760 * 299.99678 * 5 4 2 26 26 H 1.08993 * 109.47232 * 59.99757 * 5 4 2 27 27 H 0.96995 * 120.00096 * 180.02562 * 9 8 6 28 28 H 1.00897 * 110.99966 * 227.66264 * 14 2 1 29 29 H 1.08997 * 109.47125 * 196.09229 * 16 15 14 30 30 H 1.09000 * 109.47141 * 316.09779 * 16 15 14 31 31 H 1.09004 * 109.46645 * 76.09732 * 16 15 14 32 32 H 1.09000 * 113.61158 * 254.52938 * 17 15 14 33 33 H 1.08998 * 113.61235 * 25.43144 * 17 15 14 34 34 H 1.09001 * 113.61230 * 89.11478 * 18 17 15 35 35 H 1.09001 * 113.61819 * 220.01423 * 18 17 15 36 36 H 1.08992 * 113.61205 * 270.88323 * 19 18 17 37 37 H 1.08996 * 113.61119 * 139.98012 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.6132 1.3137 6 6 4.0672 -1.3241 2.5439 7 1 3.3688 -1.8046 3.2130 8 6 5.4185 -1.3612 2.8151 9 7 6.2691 -0.7766 2.0000 10 14 6.0412 -2.2419 4.3403 11 1 5.6477 -3.6725 4.2812 12 1 7.5213 -2.1381 4.4022 13 1 5.4497 -1.6154 5.5498 14 7 2.0197 -0.6925 -1.1994 15 6 2.5016 0.2673 -2.2016 16 6 1.3779 1.1107 -2.8073 17 6 3.7084 1.0960 -1.7306 18 6 4.2765 0.9301 -3.1499 19 6 3.4383 -0.3553 -3.2504 20 1 -0.3634 0.4367 0.9302 21 1 -0.3634 0.5872 -0.8434 22 1 -0.3633 -1.0240 -0.0869 23 1 1.6053 -0.2617 2.1370 24 1 1.7516 -1.7715 1.2056 25 1 3.9995 -1.0727 0.4260 26 1 3.8531 0.4370 1.3574 27 1 7.2198 -0.8030 2.1907 28 1 2.7383 -1.3602 -0.9634 29 1 1.7328 1.5863 -3.7215 30 1 0.5266 0.4701 -3.0377 31 1 1.0736 1.8767 -2.0939 32 1 3.4586 2.1265 -1.4780 33 1 4.3033 0.6029 -0.9618 34 1 3.9612 1.7122 -3.8406 35 1 5.3518 0.7530 -3.1719 36 1 3.9593 -1.2450 -2.8971 37 1 2.9705 -0.4963 -4.2247 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172480242.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:46 Heat of formation + Delta-G solvation = -23.527069 kcal Electronic energy + Delta-G solvation = -14747.746566 eV Core-core repulsion = 12523.839342 eV Total energy + Delta-G solvation = -2223.907225 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.79823 -37.32303 -35.00791 -32.13999 -30.38812 -29.43923 -26.92131 -26.62379 -23.88447 -23.06205 -21.04798 -19.44625 -18.45792 -17.22638 -16.55020 -16.28766 -15.80287 -15.00778 -14.72597 -14.44138 -14.11515 -13.60893 -13.32485 -13.25638 -13.07519 -12.89630 -12.84123 -12.75897 -12.42316 -12.12591 -12.02676 -11.67582 -11.62782 -11.36872 -11.26341 -10.99667 -10.89479 -10.55587 -9.16487 -8.21327 -6.32347 1.37391 1.39993 1.47894 2.38866 3.11150 3.26893 3.68567 3.81380 3.92306 3.97159 4.14232 4.43604 4.47739 4.64539 4.74049 4.79646 4.83292 4.91077 4.94075 5.02599 5.03735 5.06973 5.08408 5.15620 5.19690 5.25782 5.39058 5.46791 5.55661 5.59928 5.72425 5.83248 6.24498 6.35651 6.52955 6.83912 7.36687 8.89206 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.034612 B = 0.008385 C = 0.007100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.772408 B = 3338.394003 C = 3942.546209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.090 3.910 3 H 0.036 0.964 4 C -0.113 4.113 5 C 0.037 3.963 6 C -0.547 4.547 7 H 0.056 0.944 8 C 0.003 3.997 9 N -0.928 5.928 10 Si 0.961 3.039 11 H -0.267 1.267 12 H -0.283 1.283 13 H -0.268 1.268 14 N -0.673 5.673 15 C 0.091 3.909 16 C -0.112 4.112 17 C -0.181 4.181 18 C -0.129 4.129 19 C -0.127 4.127 20 H 0.056 0.944 21 H 0.062 0.938 22 H 0.056 0.944 23 H 0.053 0.947 24 H 0.053 0.947 25 H -0.003 1.003 26 H -0.018 1.018 27 H 0.262 0.738 28 H 0.336 0.664 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.051 0.949 34 H 0.103 0.897 35 H 0.059 0.941 36 H 0.064 0.936 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.288 3.087 -9.478 12.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.019 4.019 3 H 0.054 0.946 4 C -0.151 4.151 5 C 0.000 4.000 6 C -0.585 4.585 7 H 0.075 0.925 8 C -0.195 4.195 9 N -0.568 5.568 10 Si 0.786 3.214 11 H -0.192 1.192 12 H -0.208 1.208 13 H -0.193 1.193 14 N -0.303 5.303 15 C -0.001 4.001 16 C -0.169 4.169 17 C -0.220 4.220 18 C -0.167 4.167 19 C -0.165 4.165 20 H 0.075 0.925 21 H 0.081 0.919 22 H 0.075 0.925 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.015 0.985 26 H 0.000 1.000 27 H 0.071 0.929 28 H 0.155 0.845 29 H 0.095 0.905 30 H 0.088 0.912 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.121 0.879 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -8.756 3.052 -9.777 13.475 hybrid contribution 1.784 -0.104 1.480 2.320 sum -6.972 2.948 -8.297 11.231 Atomic orbital electron populations 1.21766 0.93421 1.02034 1.01300 1.21458 0.96154 0.95648 0.88650 0.94554 1.21845 0.96485 0.99749 0.96994 1.18932 0.91799 0.94190 0.95117 1.21695 0.92568 1.34761 1.09515 0.92542 1.25931 0.97328 0.96304 0.99972 1.70085 1.02663 1.45192 1.38897 0.85562 0.77033 0.79288 0.79543 1.19222 1.20799 1.19336 1.60665 1.41490 1.16854 1.11326 1.22507 0.92393 0.92279 0.92907 1.21507 0.96817 0.98320 1.00268 1.23695 0.99913 1.00603 0.97817 1.22729 0.99336 0.98501 0.96116 1.23033 0.96946 0.97019 0.99461 0.92497 0.91867 0.92527 0.92782 0.92803 0.98488 0.99992 0.92897 0.84508 0.90456 0.91202 0.92935 0.92283 0.93015 0.87879 0.92210 0.91688 0.89136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.62 9.43 71.98 0.68 -2.94 16 2 C 0.09 3.18 2.14 44.92 0.10 3.28 16 3 H 0.04 1.37 6.84 -2.39 -0.02 1.35 16 4 C -0.11 -4.76 4.58 30.59 0.14 -4.62 16 5 C 0.04 1.94 4.10 29.85 0.12 2.06 16 6 C -0.55 -31.66 9.11 25.60 0.23 -31.43 16 7 H 0.06 3.15 7.74 -2.91 -0.02 3.13 16 8 C 0.00 0.16 5.46 84.65 0.46 0.62 16 9 N -0.93 -56.77 13.29 21.45 0.28 -56.48 16 10 Si 0.96 44.86 29.54 68.60 2.03 46.89 16 11 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 12 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 13 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 14 N -0.67 -22.95 6.28 -445.72 -2.80 -25.75 16 15 C 0.09 2.70 1.10 4.06 0.00 2.71 16 16 C -0.11 -2.63 7.98 71.98 0.57 -2.05 16 17 C -0.18 -6.14 6.26 31.12 0.19 -5.95 16 18 C -0.13 -3.50 7.73 31.12 0.24 -3.26 16 19 C -0.13 -3.46 7.31 31.12 0.23 -3.24 16 20 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 21 H 0.06 1.59 7.01 -2.39 -0.02 1.57 16 22 H 0.06 1.59 8.14 -2.39 -0.02 1.58 16 23 H 0.05 2.24 8.14 -2.38 -0.02 2.22 16 24 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 25 H 0.00 -0.17 6.13 -2.38 -0.01 -0.19 16 26 H -0.02 -1.07 8.09 -2.39 -0.02 -1.09 16 27 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 28 H 0.34 13.13 6.36 -89.70 -0.57 12.56 16 29 H 0.08 1.49 7.38 -2.39 -0.02 1.47 16 30 H 0.07 1.58 8.10 -2.39 -0.02 1.56 16 31 H 0.05 1.25 7.89 -2.38 -0.02 1.23 16 32 H 0.06 1.94 8.10 -2.39 -0.02 1.92 16 33 H 0.05 2.25 6.75 -2.39 -0.02 2.23 16 34 H 0.10 2.22 7.71 -2.39 -0.02 2.20 16 35 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.06 1.99 7.97 -2.39 -0.02 1.98 16 37 H 0.09 2.02 8.10 -2.39 -0.02 2.00 16 Total: -1.00 -62.40 288.83 2.93 -59.47 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: 0.45 Total: 20.68 kcal Atomic # 6 Polarization: -47.78 SS G_CDS: 2.97 Total: -44.81 kcal Atomic # 7 Polarization: -79.72 SS G_CDS: -2.51 Total: -82.23 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -62.40 2.93 -59.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172480242.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.945 kcal (2) G-P(sol) polarization free energy of solvation -62.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds