Wall clock time and date at job start Sun Mar 29 2020 21:41:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 H 1.08993 * 109.46955 * 2 1
4 4 C 1.52997 * 109.47127 * 119.99989 * 2 1 3
5 5 C 1.53001 * 109.47328 * 184.99912 * 4 2 1
6 6 C 1.50698 * 109.47370 * 180.02562 * 5 4 2
7 7 H 1.08001 * 119.99617 * 359.97438 * 6 5 4
8 8 C 1.37880 * 119.99914 * 180.02562 * 6 5 4
9 9 N 1.31506 * 119.99961 * 359.97438 * 8 6 5
10 10 Si 1.86798 * 119.99860 * 179.97438 * 8 6 5
11 11 H 1.48500 * 109.47365 * 89.99476 * 10 8 6
12 12 H 1.48503 * 109.46904 * 209.99639 * 10 8 6
13 13 H 1.48501 * 109.47144 * 329.99633 * 10 8 6
14 14 N 1.46902 * 109.46626 * 239.99653 * 2 1 3
15 15 C 1.46904 * 110.99949 * 85.00566 * 14 2 1
16 16 C 1.52997 * 109.46907 * 179.97438 * 15 14 2
17 17 C 1.53001 * 109.46838 * 179.97438 * 16 15 14
18 18 C 1.53004 * 117.50025 * 243.62048 * 17 16 15
19 19 C 1.52995 * 60.00094 * 252.51039 * 18 17 16
20 20 H 1.09001 * 109.46801 * 180.02562 * 1 2 3
21 21 H 1.09001 * 109.46998 * 299.99880 * 1 2 3
22 22 H 1.09000 * 109.47050 * 60.00171 * 1 2 3
23 23 H 1.09002 * 109.47196 * 304.99671 * 4 2 1
24 24 H 1.09001 * 109.47630 * 64.99767 * 4 2 1
25 25 H 1.09002 * 109.46786 * 300.00010 * 5 4 2
26 26 H 1.09001 * 109.46883 * 59.99398 * 5 4 2
27 27 H 0.97004 * 120.00398 * 180.02562 * 9 8 6
28 28 H 1.00900 * 110.99581 * 208.95322 * 14 2 1
29 29 H 1.09002 * 109.46523 * 299.99312 * 15 14 2
30 30 H 1.08997 * 109.46880 * 59.99279 * 15 14 2
31 31 H 1.08993 * 109.47205 * 299.99428 * 16 15 14
32 32 H 1.09008 * 109.47279 * 59.99922 * 16 15 14
33 33 H 1.09000 * 115.55074 * 29.33163 * 17 16 15
34 34 H 1.08999 * 117.49709 * 0.02562 * 18 17 16
35 35 H 1.08998 * 117.49799 * 145.01675 * 18 17 16
36 36 H 1.08995 * 117.50214 * 252.50695 * 19 18 17
37 37 H 1.09002 * 117.49777 * 107.48909 * 19 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0401 -0.7212 1.2492
5 6 3.5649 -0.6133 1.3137
6 6 4.0673 -1.3242 2.5438
7 1 3.3688 -1.8046 3.2129
8 6 5.4186 -1.3605 2.8155
9 7 6.2690 -0.7751 2.0010
10 14 6.0412 -2.2411 4.3407
11 1 6.3216 -3.6619 4.0122
12 1 7.2873 -1.5876 4.8155
13 1 5.0097 -2.1739 5.4069
14 7 2.0196 -0.6926 -1.1994
15 6 2.0825 0.2225 -2.3469
16 6 2.5961 -0.5331 -3.5742
17 6 2.6610 0.4198 -4.7694
18 6 1.7549 0.1169 -5.9645
19 6 3.2631 -0.1174 -6.0694
20 1 -0.3633 -1.0277 0.0005
21 1 -0.3633 0.5138 0.8900
22 1 -0.3633 0.5138 -0.8900
23 1 1.6055 -0.2617 2.1370
24 1 1.7517 -1.7715 1.2057
25 1 3.9995 -1.0729 0.4260
26 1 3.8532 0.4370 1.3572
27 1 7.2197 -0.8009 2.1919
28 1 2.9173 -1.1206 -1.0287
29 1 1.0871 0.6162 -2.5525
30 1 2.7589 1.0460 -2.1182
31 1 3.5915 -0.9265 -3.3683
32 1 1.9199 -1.3569 -3.8030
33 1 2.8409 1.4671 -4.5265
34 1 1.1122 -0.7611 -5.8990
35 1 1.3382 0.9649 -6.5079
36 1 3.8389 0.5765 -6.6818
37 1 3.6131 -1.1497 -6.0730
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001172483460.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:41:59
Heat of formation + Delta-G solvation = -7.797838 kcal
Electronic energy + Delta-G solvation = -13809.593426 eV
Core-core repulsion = 11586.368272 eV
Total energy + Delta-G solvation = -2223.225154 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 211.163 amu
Computer time = 0.23 seconds
Orbital eigenvalues (eV)
-37.98176 -36.79389 -33.40976 -32.05450 -29.44225 -27.98850 -25.08694 -22.61341
-22.30613 -21.24270 -20.47665 -19.33774 -16.44372 -15.78758 -15.22299 -14.97212
-14.49739 -13.97864 -13.83423 -13.09388 -12.50325 -12.29361 -12.05934 -11.71729
-11.54661 -11.43768 -11.32553 -11.09910 -11.00139 -10.87578 -10.48126 -10.38344
-10.01454 -9.85178 -9.70705 -9.25511 -9.01013 -8.34981 -7.92028 -5.99863
-4.01911 3.32616 3.38723 3.42346 3.76568 4.43614 4.46679 4.88048
4.91473 4.98297 5.32099 5.35947 5.45328 5.56424 5.59376 5.65976
5.79297 5.84675 5.93917 6.00338 6.04811 6.06623 6.22027 6.30151
6.40194 6.43930 6.54796 6.59844 6.94588 7.11195 7.57300 7.63944
7.82260 7.95401 8.01753 8.43614 9.04935 9.62283 11.11436
Molecular weight = 211.16amu
Principal moments of inertia in cm(-1)
A = 0.033652 B = 0.005712 C = 0.005019
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 831.847332 B = 4900.934083 C = 5577.161868
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.136 4.136
2 C 0.082 3.918
3 H 0.036 0.964
4 C -0.115 4.115
5 C 0.020 3.980
6 C -0.519 4.519
7 H 0.055 0.945
8 C 0.057 3.943
9 N -0.896 5.896
10 Si 0.892 3.108
11 H -0.280 1.280
12 H -0.287 1.287
13 H -0.274 1.274
14 N -0.690 5.690
15 C 0.063 3.937
16 C -0.088 4.088
17 C -0.148 4.148
18 C -0.182 4.182
19 C -0.183 4.183
20 H 0.057 0.943
21 H 0.050 0.950
22 H 0.043 0.957
23 H 0.053 0.947
24 H 0.056 0.944
25 H 0.015 0.985
26 H 0.012 0.988
27 H 0.260 0.740
28 H 0.351 0.649
29 H 0.065 0.935
30 H 0.026 0.974
31 H 0.066 0.934
32 H 0.070 0.930
33 H 0.102 0.898
34 H 0.093 0.907
35 H 0.089 0.911
36 H 0.091 0.909
37 H 0.093 0.907
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.112 2.292 -11.848 14.541
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.194 4.194
2 C -0.028 4.028
3 H 0.054 0.946
4 C -0.152 4.152
5 C -0.017 4.017
6 C -0.557 4.557
7 H 0.073 0.927
8 C -0.144 4.144
9 N -0.536 5.536
10 Si 0.720 3.280
11 H -0.206 1.206
12 H -0.213 1.213
13 H -0.199 1.199
14 N -0.324 5.324
15 C -0.067 4.067
16 C -0.126 4.126
17 C -0.166 4.166
18 C -0.219 4.219
19 C -0.220 4.220
20 H 0.076 0.924
21 H 0.069 0.931
22 H 0.062 0.938
23 H 0.072 0.928
24 H 0.075 0.925
25 H 0.034 0.966
26 H 0.030 0.970
27 H 0.070 0.930
28 H 0.173 0.827
29 H 0.083 0.917
30 H 0.045 0.955
31 H 0.085 0.915
32 H 0.088 0.912
33 H 0.120 0.880
34 H 0.112 0.888
35 H 0.108 0.892
36 H 0.109 0.891
37 H 0.112 0.888
Dipole moment (debyes) X Y Z Total
from point charges -8.540 2.077 -12.024 14.893
hybrid contribution 1.283 0.154 0.999 1.633
sum -7.257 2.231 -11.025 13.386
Atomic orbital electron populations
1.21788 0.95856 1.01631 1.00091 1.21590 0.94452 0.96063 0.90655
0.94566 1.21829 0.99639 0.99435 0.94346 1.19129 0.88831 0.96828
0.96911 1.21249 0.91958 1.34175 1.08344 0.92663 1.25023 0.97079
0.95605 0.96724 1.69958 1.02353 1.44123 1.37152 0.86599 0.78289
0.79773 0.83380 1.20640 1.21272 1.19881 1.60603 1.34634 1.32673
1.04492 1.21909 0.99917 0.94127 0.90727 1.21154 1.01674 0.97256
0.92480 1.22307 1.04403 1.00277 0.89638 1.23020 0.93208 1.03202
1.02498 1.22949 0.95910 1.02297 1.00856 0.92436 0.93104 0.93837
0.92792 0.92489 0.96648 0.96993 0.93041 0.82736 0.91669 0.95534
0.91495 0.91180 0.87987 0.88827 0.89232 0.89096 0.88810
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.06 9.42 37.16 0.35 -1.71 16
2 C 0.08 1.47 2.65 -67.71 -0.18 1.29 16
3 H 0.04 0.68 7.80 -51.93 -0.41 0.27 16
4 C -0.11 -2.41 4.74 -26.73 -0.13 -2.54 16
5 C 0.02 0.52 4.80 -27.88 -0.13 0.39 16
6 C -0.52 -14.81 9.11 -34.44 -0.31 -15.13 16
7 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16
8 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16
9 N -0.90 -27.02 13.28 55.43 0.74 -26.28 16
10 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16
11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16
12 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16
13 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16
14 N -0.69 -11.93 6.31 -106.72 -0.67 -12.60 16
15 C 0.06 0.93 5.44 -3.82 -0.02 0.91 16
16 C -0.09 -1.15 5.76 -26.73 -0.15 -1.31 16
17 C -0.15 -1.68 5.74 -90.62 -0.52 -2.20 16
18 C -0.18 -1.81 10.18 -26.73 -0.27 -2.08 16
19 C -0.18 -1.86 10.25 -26.73 -0.27 -2.14 16
20 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16
21 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16
22 H 0.04 0.60 7.45 -51.93 -0.39 0.22 16
23 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16
24 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16
25 H 0.02 0.41 6.43 -51.93 -0.33 0.08 16
26 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16
27 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16
28 H 0.35 6.71 6.47 -39.29 -0.25 6.46 16
29 H 0.06 0.92 7.44 -51.93 -0.39 0.53 16
30 H 0.03 0.41 8.05 -51.93 -0.42 0.00 16
31 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16
32 H 0.07 0.91 7.87 -51.92 -0.41 0.51 16
33 H 0.10 1.15 8.07 -51.93 -0.42 0.73 16
34 H 0.09 0.91 8.03 -51.93 -0.42 0.49 16
35 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16
36 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16
37 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16
LS Contribution 300.94 15.07 4.54 4.54
Total: -1.00 -29.24 300.94 -8.94 -38.19
By element:
Atomic # 1 Polarization: 9.13 SS G_CDS: -6.78 Total: 2.36 kcal
Atomic # 6 Polarization: -21.24 SS G_CDS: -1.74 Total: -22.98 kcal
Atomic # 7 Polarization: -38.95 SS G_CDS: 0.06 Total: -38.88 kcal
Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal
Total LS contribution 4.54 Total: 4.54 kcal
Total: -29.24 -8.94 -38.19 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001172483460.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 30.387 kcal
(2) G-P(sol) polarization free energy of solvation -29.245 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.142 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.940 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.185 kcal
(6) G-S(sol) free energy of system = (1) + (5) -7.798 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.23 seconds