Wall clock time and date at job start Sun Mar 29 2020 21:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46955 * 2 1 4 4 C 1.52997 * 109.47127 * 119.99989 * 2 1 3 5 5 C 1.53001 * 109.47328 * 184.99912 * 4 2 1 6 6 C 1.50698 * 109.47370 * 180.02562 * 5 4 2 7 7 H 1.08001 * 119.99617 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99914 * 180.02562 * 6 5 4 9 9 N 1.31506 * 119.99961 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99860 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47365 * 89.99476 * 10 8 6 12 12 H 1.48503 * 109.46904 * 209.99639 * 10 8 6 13 13 H 1.48501 * 109.47144 * 329.99633 * 10 8 6 14 14 N 1.46902 * 109.46626 * 239.99653 * 2 1 3 15 15 C 1.46904 * 110.99949 * 85.00566 * 14 2 1 16 16 C 1.52997 * 109.46907 * 179.97438 * 15 14 2 17 17 C 1.53001 * 109.46838 * 179.97438 * 16 15 14 18 18 C 1.53004 * 117.50025 * 243.62048 * 17 16 15 19 19 C 1.52995 * 60.00094 * 252.51039 * 18 17 16 20 20 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46998 * 299.99880 * 1 2 3 22 22 H 1.09000 * 109.47050 * 60.00171 * 1 2 3 23 23 H 1.09002 * 109.47196 * 304.99671 * 4 2 1 24 24 H 1.09001 * 109.47630 * 64.99767 * 4 2 1 25 25 H 1.09002 * 109.46786 * 300.00010 * 5 4 2 26 26 H 1.09001 * 109.46883 * 59.99398 * 5 4 2 27 27 H 0.97004 * 120.00398 * 180.02562 * 9 8 6 28 28 H 1.00900 * 110.99581 * 208.95322 * 14 2 1 29 29 H 1.09002 * 109.46523 * 299.99312 * 15 14 2 30 30 H 1.08997 * 109.46880 * 59.99279 * 15 14 2 31 31 H 1.08993 * 109.47205 * 299.99428 * 16 15 14 32 32 H 1.09008 * 109.47279 * 59.99922 * 16 15 14 33 33 H 1.09000 * 115.55074 * 29.33163 * 17 16 15 34 34 H 1.08999 * 117.49709 * 0.02562 * 18 17 16 35 35 H 1.08998 * 117.49799 * 145.01675 * 18 17 16 36 36 H 1.08995 * 117.50214 * 252.50695 * 19 18 17 37 37 H 1.09002 * 117.49777 * 107.48909 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5649 -0.6133 1.3137 6 6 4.0673 -1.3242 2.5438 7 1 3.3688 -1.8046 3.2129 8 6 5.4186 -1.3605 2.8155 9 7 6.2690 -0.7751 2.0010 10 14 6.0412 -2.2411 4.3407 11 1 6.3216 -3.6619 4.0122 12 1 7.2873 -1.5876 4.8155 13 1 5.0097 -2.1739 5.4069 14 7 2.0196 -0.6926 -1.1994 15 6 2.0825 0.2225 -2.3469 16 6 2.5961 -0.5331 -3.5742 17 6 2.6610 0.4198 -4.7694 18 6 1.7549 0.1169 -5.9645 19 6 3.2631 -0.1174 -6.0694 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.6055 -0.2617 2.1370 24 1 1.7517 -1.7715 1.2057 25 1 3.9995 -1.0729 0.4260 26 1 3.8532 0.4370 1.3572 27 1 7.2197 -0.8009 2.1919 28 1 2.9173 -1.1206 -1.0287 29 1 1.0871 0.6162 -2.5525 30 1 2.7589 1.0460 -2.1182 31 1 3.5915 -0.9265 -3.3683 32 1 1.9199 -1.3569 -3.8030 33 1 2.8409 1.4671 -4.5265 34 1 1.1122 -0.7611 -5.8990 35 1 1.3382 0.9649 -6.5079 36 1 3.8389 0.5765 -6.6818 37 1 3.6131 -1.1497 -6.0730 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172483460.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:59 Heat of formation + Delta-G solvation = -7.797838 kcal Electronic energy + Delta-G solvation = -13809.593426 eV Core-core repulsion = 11586.368272 eV Total energy + Delta-G solvation = -2223.225154 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -37.98176 -36.79389 -33.40976 -32.05450 -29.44225 -27.98850 -25.08694 -22.61341 -22.30613 -21.24270 -20.47665 -19.33774 -16.44372 -15.78758 -15.22299 -14.97212 -14.49739 -13.97864 -13.83423 -13.09388 -12.50325 -12.29361 -12.05934 -11.71729 -11.54661 -11.43768 -11.32553 -11.09910 -11.00139 -10.87578 -10.48126 -10.38344 -10.01454 -9.85178 -9.70705 -9.25511 -9.01013 -8.34981 -7.92028 -5.99863 -4.01911 3.32616 3.38723 3.42346 3.76568 4.43614 4.46679 4.88048 4.91473 4.98297 5.32099 5.35947 5.45328 5.56424 5.59376 5.65976 5.79297 5.84675 5.93917 6.00338 6.04811 6.06623 6.22027 6.30151 6.40194 6.43930 6.54796 6.59844 6.94588 7.11195 7.57300 7.63944 7.82260 7.95401 8.01753 8.43614 9.04935 9.62283 11.11436 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.033652 B = 0.005712 C = 0.005019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.847332 B = 4900.934083 C = 5577.161868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.082 3.918 3 H 0.036 0.964 4 C -0.115 4.115 5 C 0.020 3.980 6 C -0.519 4.519 7 H 0.055 0.945 8 C 0.057 3.943 9 N -0.896 5.896 10 Si 0.892 3.108 11 H -0.280 1.280 12 H -0.287 1.287 13 H -0.274 1.274 14 N -0.690 5.690 15 C 0.063 3.937 16 C -0.088 4.088 17 C -0.148 4.148 18 C -0.182 4.182 19 C -0.183 4.183 20 H 0.057 0.943 21 H 0.050 0.950 22 H 0.043 0.957 23 H 0.053 0.947 24 H 0.056 0.944 25 H 0.015 0.985 26 H 0.012 0.988 27 H 0.260 0.740 28 H 0.351 0.649 29 H 0.065 0.935 30 H 0.026 0.974 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.102 0.898 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.112 2.292 -11.848 14.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.028 4.028 3 H 0.054 0.946 4 C -0.152 4.152 5 C -0.017 4.017 6 C -0.557 4.557 7 H 0.073 0.927 8 C -0.144 4.144 9 N -0.536 5.536 10 Si 0.720 3.280 11 H -0.206 1.206 12 H -0.213 1.213 13 H -0.199 1.199 14 N -0.324 5.324 15 C -0.067 4.067 16 C -0.126 4.126 17 C -0.166 4.166 18 C -0.219 4.219 19 C -0.220 4.220 20 H 0.076 0.924 21 H 0.069 0.931 22 H 0.062 0.938 23 H 0.072 0.928 24 H 0.075 0.925 25 H 0.034 0.966 26 H 0.030 0.970 27 H 0.070 0.930 28 H 0.173 0.827 29 H 0.083 0.917 30 H 0.045 0.955 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.120 0.880 34 H 0.112 0.888 35 H 0.108 0.892 36 H 0.109 0.891 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -8.540 2.077 -12.024 14.893 hybrid contribution 1.283 0.154 0.999 1.633 sum -7.257 2.231 -11.025 13.386 Atomic orbital electron populations 1.21788 0.95856 1.01631 1.00091 1.21590 0.94452 0.96063 0.90655 0.94566 1.21829 0.99639 0.99435 0.94346 1.19129 0.88831 0.96828 0.96911 1.21249 0.91958 1.34175 1.08344 0.92663 1.25023 0.97079 0.95605 0.96724 1.69958 1.02353 1.44123 1.37152 0.86599 0.78289 0.79773 0.83380 1.20640 1.21272 1.19881 1.60603 1.34634 1.32673 1.04492 1.21909 0.99917 0.94127 0.90727 1.21154 1.01674 0.97256 0.92480 1.22307 1.04403 1.00277 0.89638 1.23020 0.93208 1.03202 1.02498 1.22949 0.95910 1.02297 1.00856 0.92436 0.93104 0.93837 0.92792 0.92489 0.96648 0.96993 0.93041 0.82736 0.91669 0.95534 0.91495 0.91180 0.87987 0.88827 0.89232 0.89096 0.88810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 9.42 37.16 0.35 -1.71 16 2 C 0.08 1.47 2.65 -67.71 -0.18 1.29 16 3 H 0.04 0.68 7.80 -51.93 -0.41 0.27 16 4 C -0.11 -2.41 4.74 -26.73 -0.13 -2.54 16 5 C 0.02 0.52 4.80 -27.88 -0.13 0.39 16 6 C -0.52 -14.81 9.11 -34.44 -0.31 -15.13 16 7 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 8 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 9 N -0.90 -27.02 13.28 55.43 0.74 -26.28 16 10 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 13 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 14 N -0.69 -11.93 6.31 -106.72 -0.67 -12.60 16 15 C 0.06 0.93 5.44 -3.82 -0.02 0.91 16 16 C -0.09 -1.15 5.76 -26.73 -0.15 -1.31 16 17 C -0.15 -1.68 5.74 -90.62 -0.52 -2.20 16 18 C -0.18 -1.81 10.18 -26.73 -0.27 -2.08 16 19 C -0.18 -1.86 10.25 -26.73 -0.27 -2.14 16 20 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 21 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 22 H 0.04 0.60 7.45 -51.93 -0.39 0.22 16 23 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 24 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 25 H 0.02 0.41 6.43 -51.93 -0.33 0.08 16 26 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 28 H 0.35 6.71 6.47 -39.29 -0.25 6.46 16 29 H 0.06 0.92 7.44 -51.93 -0.39 0.53 16 30 H 0.03 0.41 8.05 -51.93 -0.42 0.00 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.07 0.91 7.87 -51.92 -0.41 0.51 16 33 H 0.10 1.15 8.07 -51.93 -0.42 0.73 16 34 H 0.09 0.91 8.03 -51.93 -0.42 0.49 16 35 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 300.94 15.07 4.54 4.54 Total: -1.00 -29.24 300.94 -8.94 -38.19 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -6.78 Total: 2.36 kcal Atomic # 6 Polarization: -21.24 SS G_CDS: -1.74 Total: -22.98 kcal Atomic # 7 Polarization: -38.95 SS G_CDS: 0.06 Total: -38.88 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -29.24 -8.94 -38.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172483460.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.387 kcal (2) G-P(sol) polarization free energy of solvation -29.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds