Wall clock time and date at job start Sun Mar 29 2020 21:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46955 * 2 1 4 4 C 1.52997 * 109.47127 * 119.99989 * 2 1 3 5 5 C 1.53001 * 109.47328 * 184.99912 * 4 2 1 6 6 C 1.50698 * 109.47370 * 180.02562 * 5 4 2 7 7 H 1.08001 * 119.99617 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99914 * 180.02562 * 6 5 4 9 9 N 1.31506 * 119.99961 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99860 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47365 * 89.99476 * 10 8 6 12 12 H 1.48503 * 109.46904 * 209.99639 * 10 8 6 13 13 H 1.48501 * 109.47144 * 329.99633 * 10 8 6 14 14 N 1.46902 * 109.46626 * 239.99653 * 2 1 3 15 15 C 1.46904 * 110.99949 * 85.00566 * 14 2 1 16 16 C 1.52997 * 109.46907 * 179.97438 * 15 14 2 17 17 C 1.53001 * 109.46838 * 179.97438 * 16 15 14 18 18 C 1.53004 * 117.50025 * 243.62048 * 17 16 15 19 19 C 1.52995 * 60.00094 * 252.51039 * 18 17 16 20 20 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46998 * 299.99880 * 1 2 3 22 22 H 1.09000 * 109.47050 * 60.00171 * 1 2 3 23 23 H 1.09002 * 109.47196 * 304.99671 * 4 2 1 24 24 H 1.09001 * 109.47630 * 64.99767 * 4 2 1 25 25 H 1.09002 * 109.46786 * 300.00010 * 5 4 2 26 26 H 1.09001 * 109.46883 * 59.99398 * 5 4 2 27 27 H 0.97004 * 120.00398 * 180.02562 * 9 8 6 28 28 H 1.00900 * 110.99581 * 208.95322 * 14 2 1 29 29 H 1.09002 * 109.46523 * 299.99312 * 15 14 2 30 30 H 1.08997 * 109.46880 * 59.99279 * 15 14 2 31 31 H 1.08993 * 109.47205 * 299.99428 * 16 15 14 32 32 H 1.09008 * 109.47279 * 59.99922 * 16 15 14 33 33 H 1.09000 * 115.55074 * 29.33163 * 17 16 15 34 34 H 1.08999 * 117.49709 * 0.02562 * 18 17 16 35 35 H 1.08998 * 117.49799 * 145.01675 * 18 17 16 36 36 H 1.08995 * 117.50214 * 252.50695 * 19 18 17 37 37 H 1.09002 * 117.49777 * 107.48909 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5649 -0.6133 1.3137 6 6 4.0673 -1.3242 2.5438 7 1 3.3688 -1.8046 3.2129 8 6 5.4186 -1.3605 2.8155 9 7 6.2690 -0.7751 2.0010 10 14 6.0412 -2.2411 4.3407 11 1 6.3216 -3.6619 4.0122 12 1 7.2873 -1.5876 4.8155 13 1 5.0097 -2.1739 5.4069 14 7 2.0196 -0.6926 -1.1994 15 6 2.0825 0.2225 -2.3469 16 6 2.5961 -0.5331 -3.5742 17 6 2.6610 0.4198 -4.7694 18 6 1.7549 0.1169 -5.9645 19 6 3.2631 -0.1174 -6.0694 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.6055 -0.2617 2.1370 24 1 1.7517 -1.7715 1.2057 25 1 3.9995 -1.0729 0.4260 26 1 3.8532 0.4370 1.3572 27 1 7.2197 -0.8009 2.1919 28 1 2.9173 -1.1206 -1.0287 29 1 1.0871 0.6162 -2.5525 30 1 2.7589 1.0460 -2.1182 31 1 3.5915 -0.9265 -3.3683 32 1 1.9199 -1.3569 -3.8030 33 1 2.8409 1.4671 -4.5265 34 1 1.1122 -0.7611 -5.8990 35 1 1.3382 0.9649 -6.5079 36 1 3.8389 0.5765 -6.6818 37 1 3.6131 -1.1497 -6.0730 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172483460.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:59 Heat of formation + Delta-G solvation = -24.379052 kcal Electronic energy + Delta-G solvation = -13810.312442 eV Core-core repulsion = 11586.368272 eV Total energy + Delta-G solvation = -2223.944170 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.12087 -38.03247 -35.35133 -33.64085 -31.21231 -29.19384 -27.02920 -23.88868 -23.21980 -22.91239 -21.56707 -20.78905 -18.53927 -17.01693 -16.59823 -16.51124 -16.06054 -15.27350 -14.93835 -14.61186 -14.32227 -14.02690 -13.36776 -13.16231 -12.94219 -12.83750 -12.67334 -12.42470 -12.32236 -12.29913 -12.11818 -11.81339 -11.57880 -11.33611 -11.06765 -10.92831 -10.73364 -10.55515 -9.33214 -8.20959 -6.31851 1.39604 1.40802 1.51922 2.40542 2.92048 3.11945 3.23497 3.90209 4.02731 4.03541 4.10568 4.29298 4.32520 4.41572 4.49143 4.65737 4.76889 4.80669 4.82058 4.93346 5.01046 5.05730 5.07119 5.10636 5.18979 5.22890 5.29476 5.42392 5.44799 5.53090 5.69661 5.83222 6.23041 6.26071 6.44308 6.84715 7.37509 8.90615 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.033652 B = 0.005712 C = 0.005019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.847332 B = 4900.934083 C = 5577.161868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.085 3.915 3 H 0.026 0.974 4 C -0.102 4.102 5 C 0.027 3.973 6 C -0.544 4.544 7 H 0.059 0.941 8 C 0.001 3.999 9 N -0.933 5.933 10 Si 0.964 3.036 11 H -0.272 1.272 12 H -0.282 1.282 13 H -0.264 1.264 14 N -0.691 5.691 15 C 0.065 3.935 16 C -0.080 4.080 17 C -0.164 4.164 18 C -0.171 4.171 19 C -0.182 4.182 20 H 0.058 0.942 21 H 0.062 0.938 22 H 0.059 0.941 23 H 0.057 0.943 24 H 0.056 0.944 25 H -0.002 1.002 26 H -0.017 1.017 27 H 0.263 0.737 28 H 0.337 0.663 29 H 0.079 0.921 30 H 0.014 0.986 31 H 0.050 0.950 32 H 0.072 0.928 33 H 0.102 0.898 34 H 0.097 0.903 35 H 0.104 0.896 36 H 0.102 0.898 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.162 1.973 -11.998 15.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.025 4.025 3 H 0.044 0.956 4 C -0.140 4.140 5 C -0.011 4.011 6 C -0.582 4.582 7 H 0.077 0.923 8 C -0.197 4.197 9 N -0.573 5.573 10 Si 0.789 3.211 11 H -0.197 1.197 12 H -0.208 1.208 13 H -0.188 1.188 14 N -0.324 5.324 15 C -0.064 4.064 16 C -0.118 4.118 17 C -0.183 4.183 18 C -0.207 4.207 19 C -0.219 4.219 20 H 0.077 0.923 21 H 0.081 0.919 22 H 0.078 0.922 23 H 0.076 0.924 24 H 0.074 0.926 25 H 0.017 0.983 26 H 0.001 0.999 27 H 0.072 0.928 28 H 0.156 0.844 29 H 0.097 0.903 30 H 0.032 0.968 31 H 0.069 0.931 32 H 0.090 0.910 33 H 0.120 0.880 34 H 0.115 0.885 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -9.616 1.762 -12.181 15.619 hybrid contribution 1.623 0.275 1.012 1.933 sum -7.993 2.037 -11.169 13.885 Atomic orbital electron populations 1.21705 0.93047 1.02176 1.01545 1.21557 0.96551 0.94877 0.89526 0.95629 1.21653 0.96138 0.99882 0.96317 1.19008 0.92176 0.94396 0.95484 1.21697 0.92599 1.34554 1.09312 0.92306 1.25960 0.97319 0.96291 1.00100 1.70089 1.02755 1.45341 1.39126 0.85461 0.77791 0.78606 0.79283 1.19718 1.20764 1.18787 1.60722 1.33586 1.33149 1.04913 1.21970 1.00468 0.93535 0.90439 1.21048 1.00636 0.97518 0.92559 1.22236 1.06649 0.99830 0.89548 1.23098 0.93015 1.03752 1.00879 1.23034 0.96557 1.02489 0.99814 0.92297 0.91871 0.92216 0.92407 0.92574 0.98348 0.99904 0.92812 0.84383 0.90254 0.96778 0.93083 0.90964 0.88013 0.88502 0.87770 0.87962 0.88894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.59 9.42 71.98 0.68 -2.91 16 2 C 0.08 3.00 2.65 44.92 0.12 3.12 16 3 H 0.03 0.96 7.80 -2.39 -0.02 0.94 16 4 C -0.10 -4.31 4.74 30.59 0.15 -4.16 16 5 C 0.03 1.41 4.80 29.85 0.14 1.56 16 6 C -0.54 -31.40 9.11 25.60 0.23 -31.16 16 7 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 8 C 0.00 0.06 5.46 84.66 0.46 0.52 16 9 N -0.93 -57.20 13.28 21.45 0.28 -56.92 16 10 Si 0.96 44.69 29.54 68.60 2.03 46.71 16 11 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 12 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 13 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 14 N -0.69 -23.95 6.31 -491.57 -3.10 -27.05 16 15 C 0.07 1.91 5.44 86.30 0.47 2.38 16 16 C -0.08 -2.08 5.76 30.59 0.18 -1.90 16 17 C -0.16 -3.57 5.74 -10.79 -0.06 -3.63 16 18 C -0.17 -3.03 10.18 30.59 0.31 -2.72 16 19 C -0.18 -3.44 10.25 30.59 0.31 -3.13 16 20 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 21 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 22 H 0.06 1.50 7.45 -2.39 -0.02 1.49 16 23 H 0.06 2.36 8.14 -2.39 -0.02 2.35 16 24 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 25 H 0.00 -0.09 6.43 -2.39 -0.02 -0.11 16 26 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 27 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 28 H 0.34 13.31 6.47 -89.69 -0.58 12.73 16 29 H 0.08 2.11 7.44 -2.39 -0.02 2.09 16 30 H 0.01 0.45 8.05 -2.39 -0.02 0.43 16 31 H 0.05 1.46 8.14 -2.39 -0.02 1.45 16 32 H 0.07 1.83 7.87 -2.38 -0.02 1.81 16 33 H 0.10 2.21 8.07 -2.39 -0.02 2.19 16 34 H 0.10 1.67 8.03 -2.39 -0.02 1.65 16 35 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -62.26 300.94 2.63 -59.63 By element: Atomic # 1 Polarization: 19.23 SS G_CDS: 0.43 Total: 19.66 kcal Atomic # 6 Polarization: -45.02 SS G_CDS: 2.99 Total: -42.04 kcal Atomic # 7 Polarization: -81.15 SS G_CDS: -2.82 Total: -83.97 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.71 kcal Total: -62.26 2.63 -59.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172483460.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.255 kcal (2) G-P(sol) polarization free energy of solvation -62.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds