Wall clock time and date at job start Sun Mar 29 2020 21:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47175 * 2 1 4 4 C 1.53006 * 109.46646 * 240.00025 * 2 1 3 5 5 C 1.52999 * 109.46626 * 174.99857 * 4 2 1 6 6 C 1.50706 * 109.46957 * 180.02562 * 5 4 2 7 7 H 1.07999 * 119.99816 * 0.02562 * 6 5 4 8 8 C 1.37876 * 120.00340 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00347 * 180.02562 * 8 6 5 10 10 Si 1.86803 * 119.99775 * 359.97438 * 8 6 5 11 11 H 1.48498 * 109.46867 * 90.00546 * 10 8 6 12 12 H 1.48501 * 109.47216 * 210.00404 * 10 8 6 13 13 H 1.48499 * 109.47135 * 330.00745 * 10 8 6 14 14 N 1.46901 * 109.47202 * 120.00278 * 2 1 3 15 15 C 1.46899 * 110.99821 * 274.99962 * 14 2 1 16 16 H 1.08997 * 115.54899 * 9.32458 * 15 14 2 17 17 C 1.53005 * 117.49470 * 223.62551 * 15 14 2 18 18 C 1.52997 * 117.49887 * 155.00177 * 15 14 2 19 19 C 1.53000 * 117.49755 * 214.97391 * 18 15 14 20 20 C 1.52999 * 117.49655 * 359.97438 * 18 15 14 21 21 H 1.09002 * 109.46731 * 299.99878 * 1 2 3 22 22 H 1.09004 * 109.47394 * 59.99257 * 1 2 3 23 23 H 1.08990 * 109.47621 * 180.02562 * 1 2 3 24 24 H 1.08993 * 109.46955 * 295.00330 * 4 2 1 25 25 H 1.09000 * 109.47050 * 55.00158 * 4 2 1 26 26 H 1.08993 * 109.47839 * 299.99931 * 5 4 2 27 27 H 1.09000 * 109.47160 * 60.00369 * 5 4 2 28 28 H 0.96991 * 119.99882 * 179.97438 * 9 8 6 29 29 H 1.00897 * 110.99643 * 151.04045 * 14 2 1 30 30 H 1.09001 * 117.49734 * 359.97438 * 17 15 14 31 31 H 1.09000 * 117.49989 * 145.02012 * 17 15 14 32 32 H 1.08998 * 109.47145 * 60.00231 * 19 18 15 33 33 H 1.09005 * 109.47046 * 179.97438 * 19 18 15 34 34 H 1.08996 * 109.47501 * 299.99757 * 19 18 15 35 35 H 1.08994 * 109.47416 * 60.00454 * 20 18 15 36 36 H 1.09003 * 109.47102 * 180.02562 * 20 18 15 37 37 H 1.09003 * 109.47380 * 299.99561 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5647 -0.6133 -1.3138 6 6 4.0669 -1.3232 -2.5447 7 1 3.3684 -1.8030 -3.2141 8 6 5.4182 -1.3602 -2.8161 9 7 5.8565 -1.9792 -3.8905 10 14 6.6264 -0.5297 -1.6585 11 1 7.0613 -1.4974 -0.6194 12 1 7.8087 -0.0645 -2.4273 13 1 5.9698 0.6328 -1.0084 14 7 2.0197 -0.6926 1.1994 15 6 2.0825 0.2225 2.3469 16 1 1.6223 1.1989 2.1952 17 6 3.3268 0.1577 3.2348 18 6 1.9930 -0.3912 3.7455 19 6 1.2649 0.4130 4.8245 20 6 1.8444 -1.9109 3.8420 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5140 -0.8899 23 1 -0.3634 -1.0275 0.0005 24 1 1.7514 -1.7715 -1.2057 25 1 1.6052 -0.2617 -2.1370 26 1 3.8531 0.4369 -1.3575 27 1 3.9993 -1.0729 -0.4261 28 1 6.8070 -2.0049 -4.0815 29 1 2.9172 -1.1206 1.0286 30 1 4.0986 -0.5642 2.9677 31 1 3.6856 1.0916 3.6675 32 1 0.2328 0.5817 4.5175 33 1 1.2785 -0.1421 5.7625 34 1 1.7645 1.3719 4.9622 35 1 2.7026 -2.3905 3.3715 36 1 1.7929 -2.2051 4.8903 37 1 0.9313 -2.2197 3.3330 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172488567.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:05 Heat of formation + Delta-G solvation = -1.303514 kcal Electronic energy + Delta-G solvation = -14308.901001 eV Core-core repulsion = 12085.957462 eV Total energy + Delta-G solvation = -2222.943539 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.80986 -36.11777 -32.92795 -30.80718 -29.55278 -27.90328 -27.27390 -25.27599 -21.66287 -21.03007 -19.67397 -18.73840 -16.78266 -15.72010 -15.03715 -14.48868 -14.13089 -13.71363 -13.50348 -13.19929 -12.68086 -12.46514 -12.32034 -12.12272 -11.93394 -11.72451 -11.43131 -11.36909 -11.06092 -10.95470 -10.91267 -10.23638 -9.99488 -9.75108 -9.49489 -9.42876 -9.17295 -8.55055 -7.87812 -6.05174 -4.02989 3.28404 3.36246 3.39175 3.84109 4.33503 4.43593 4.89718 4.93650 5.10382 5.23145 5.28635 5.44516 5.56761 5.66816 5.69309 5.77546 5.86964 5.92125 5.94803 6.06967 6.09973 6.15327 6.23959 6.27256 6.41486 6.44045 6.52020 6.73872 6.85484 7.26814 7.32480 7.54000 7.74263 7.79473 8.53672 9.00453 9.57413 11.08414 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.032647 B = 0.007819 C = 0.006834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.440383 B = 3580.386825 C = 4095.956942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.081 3.919 3 H 0.039 0.961 4 C -0.107 4.107 5 C -0.014 4.014 6 C -0.518 4.518 7 H 0.072 0.928 8 C 0.066 3.934 9 N -0.903 5.903 10 Si 0.879 3.121 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.267 1.267 14 N -0.653 5.653 15 C 0.038 3.962 16 H 0.103 0.897 17 C -0.205 4.205 18 C -0.126 4.126 19 C -0.112 4.112 20 C -0.101 4.101 21 H 0.044 0.956 22 H 0.052 0.948 23 H 0.058 0.942 24 H 0.063 0.937 25 H 0.061 0.939 26 H 0.012 0.988 27 H 0.008 0.992 28 H 0.263 0.737 29 H 0.351 0.649 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.052 0.948 35 H 0.055 0.945 36 H 0.047 0.953 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.149 4.897 15.009 17.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.028 4.028 3 H 0.057 0.943 4 C -0.145 4.145 5 C -0.052 4.052 6 C -0.556 4.556 7 H 0.090 0.910 8 C -0.135 4.135 9 N -0.542 5.542 10 Si 0.706 3.294 11 H -0.203 1.203 12 H -0.214 1.214 13 H -0.192 1.192 14 N -0.286 5.286 15 C -0.073 4.073 16 H 0.121 0.879 17 C -0.244 4.244 18 C -0.127 4.127 19 C -0.169 4.169 20 C -0.158 4.158 21 H 0.063 0.937 22 H 0.071 0.929 23 H 0.077 0.923 24 H 0.081 0.919 25 H 0.080 0.920 26 H 0.031 0.969 27 H 0.026 0.974 28 H 0.072 0.928 29 H 0.174 0.826 30 H 0.112 0.888 31 H 0.108 0.892 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -8.600 4.588 15.029 17.914 hybrid contribution 1.665 0.944 0.286 1.935 sum -6.936 5.532 15.315 17.699 Atomic orbital electron populations 1.21778 0.95362 1.01898 1.00268 1.21688 0.94910 0.96051 0.90139 0.94262 1.21670 0.98037 1.00116 0.94643 1.19605 0.91959 0.96551 0.97067 1.21133 0.92916 1.34226 1.07361 0.90978 1.25038 0.98415 0.94929 0.95089 1.69912 1.14596 1.43481 1.26249 0.86796 0.80867 0.80480 0.81240 1.20280 1.21383 1.19173 1.60282 1.33723 1.30879 1.03697 1.22590 1.00150 0.95985 0.88586 0.87922 1.23752 0.91831 1.02849 1.05923 1.21774 0.99111 0.96115 0.95699 1.21319 0.99757 0.98795 0.97017 1.21130 1.02542 0.91897 1.00247 0.93675 0.92915 0.92271 0.91860 0.92000 0.96935 0.97386 0.92753 0.82628 0.88762 0.89213 0.92407 0.92407 0.92879 0.92610 0.93432 0.91749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 9.42 37.16 0.35 -1.57 16 2 C 0.08 1.34 2.54 -67.71 -0.17 1.17 16 3 H 0.04 0.66 7.73 -51.93 -0.40 0.26 16 4 C -0.11 -2.12 4.74 -26.73 -0.13 -2.24 16 5 C -0.01 -0.34 3.87 -27.88 -0.11 -0.45 16 6 C -0.52 -14.86 9.66 -34.44 -0.33 -15.19 16 7 H 0.07 2.22 7.99 -52.49 -0.42 1.81 16 8 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 9 N -0.90 -28.08 13.96 55.43 0.77 -27.30 16 10 Si 0.88 21.88 27.47 -169.99 -4.67 17.21 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 13 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 14 N -0.65 -10.45 5.96 -99.74 -0.59 -11.04 16 15 C 0.04 0.54 5.72 -67.71 -0.39 0.15 16 16 H 0.10 1.39 7.77 -51.93 -0.40 0.98 16 17 C -0.20 -2.69 9.52 -26.72 -0.25 -2.95 16 18 C -0.13 -1.55 2.70 -154.51 -0.42 -1.97 16 19 C -0.11 -1.13 9.85 37.16 0.37 -0.77 16 20 C -0.10 -1.24 9.31 37.16 0.35 -0.89 16 21 H 0.04 0.59 8.07 -51.93 -0.42 0.17 16 22 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 23 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 24 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 25 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 26 H 0.01 0.30 7.20 -51.93 -0.37 -0.07 16 27 H 0.01 0.19 5.85 -51.93 -0.30 -0.12 16 28 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 29 H 0.35 6.14 6.26 -39.29 -0.25 5.90 16 30 H 0.09 1.31 7.99 -51.93 -0.42 0.90 16 31 H 0.09 1.07 8.05 -51.93 -0.42 0.65 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.53 7.92 -51.93 -0.41 0.12 16 34 H 0.05 0.50 7.90 -51.93 -0.41 0.09 16 35 H 0.05 0.73 7.90 -51.93 -0.41 0.32 16 36 H 0.05 0.51 7.92 -51.93 -0.41 0.09 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 296.66 15.07 4.47 4.47 Total: -1.00 -29.71 296.66 -7.60 -37.31 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -6.75 Total: 2.20 kcal Atomic # 6 Polarization: -22.02 SS G_CDS: -0.83 Total: -22.85 kcal Atomic # 7 Polarization: -38.52 SS G_CDS: 0.18 Total: -38.34 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.67 Total: 17.21 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -29.71 -7.60 -37.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172488567.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.008 kcal (2) G-P(sol) polarization free energy of solvation -29.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds