Wall clock time and date at job start Sun Mar 29 2020 21:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47175 * 2 1 4 4 C 1.53006 * 109.46646 * 240.00025 * 2 1 3 5 5 C 1.52999 * 109.46626 * 174.99857 * 4 2 1 6 6 C 1.50706 * 109.46957 * 180.02562 * 5 4 2 7 7 H 1.07999 * 119.99816 * 0.02562 * 6 5 4 8 8 C 1.37876 * 120.00340 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00347 * 180.02562 * 8 6 5 10 10 Si 1.86803 * 119.99775 * 359.97438 * 8 6 5 11 11 H 1.48498 * 109.46867 * 90.00546 * 10 8 6 12 12 H 1.48501 * 109.47216 * 210.00404 * 10 8 6 13 13 H 1.48499 * 109.47135 * 330.00745 * 10 8 6 14 14 N 1.46901 * 109.47202 * 120.00278 * 2 1 3 15 15 C 1.46899 * 110.99821 * 274.99962 * 14 2 1 16 16 H 1.08997 * 115.54899 * 9.32458 * 15 14 2 17 17 C 1.53005 * 117.49470 * 223.62551 * 15 14 2 18 18 C 1.52997 * 117.49887 * 155.00177 * 15 14 2 19 19 C 1.53000 * 117.49755 * 214.97391 * 18 15 14 20 20 C 1.52999 * 117.49655 * 359.97438 * 18 15 14 21 21 H 1.09002 * 109.46731 * 299.99878 * 1 2 3 22 22 H 1.09004 * 109.47394 * 59.99257 * 1 2 3 23 23 H 1.08990 * 109.47621 * 180.02562 * 1 2 3 24 24 H 1.08993 * 109.46955 * 295.00330 * 4 2 1 25 25 H 1.09000 * 109.47050 * 55.00158 * 4 2 1 26 26 H 1.08993 * 109.47839 * 299.99931 * 5 4 2 27 27 H 1.09000 * 109.47160 * 60.00369 * 5 4 2 28 28 H 0.96991 * 119.99882 * 179.97438 * 9 8 6 29 29 H 1.00897 * 110.99643 * 151.04045 * 14 2 1 30 30 H 1.09001 * 117.49734 * 359.97438 * 17 15 14 31 31 H 1.09000 * 117.49989 * 145.02012 * 17 15 14 32 32 H 1.08998 * 109.47145 * 60.00231 * 19 18 15 33 33 H 1.09005 * 109.47046 * 179.97438 * 19 18 15 34 34 H 1.08996 * 109.47501 * 299.99757 * 19 18 15 35 35 H 1.08994 * 109.47416 * 60.00454 * 20 18 15 36 36 H 1.09003 * 109.47102 * 180.02562 * 20 18 15 37 37 H 1.09003 * 109.47380 * 299.99561 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5647 -0.6133 -1.3138 6 6 4.0669 -1.3232 -2.5447 7 1 3.3684 -1.8030 -3.2141 8 6 5.4182 -1.3602 -2.8161 9 7 5.8565 -1.9792 -3.8905 10 14 6.6264 -0.5297 -1.6585 11 1 7.0613 -1.4974 -0.6194 12 1 7.8087 -0.0645 -2.4273 13 1 5.9698 0.6328 -1.0084 14 7 2.0197 -0.6926 1.1994 15 6 2.0825 0.2225 2.3469 16 1 1.6223 1.1989 2.1952 17 6 3.3268 0.1577 3.2348 18 6 1.9930 -0.3912 3.7455 19 6 1.2649 0.4130 4.8245 20 6 1.8444 -1.9109 3.8420 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5140 -0.8899 23 1 -0.3634 -1.0275 0.0005 24 1 1.7514 -1.7715 -1.2057 25 1 1.6052 -0.2617 -2.1370 26 1 3.8531 0.4369 -1.3575 27 1 3.9993 -1.0729 -0.4261 28 1 6.8070 -2.0049 -4.0815 29 1 2.9172 -1.1206 1.0286 30 1 4.0986 -0.5642 2.9677 31 1 3.6856 1.0916 3.6675 32 1 0.2328 0.5817 4.5175 33 1 1.2785 -0.1421 5.7625 34 1 1.7645 1.3719 4.9622 35 1 2.7026 -2.3905 3.3715 36 1 1.7929 -2.2051 4.8903 37 1 0.9313 -2.2197 3.3330 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172488567.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:05 Heat of formation + Delta-G solvation = -19.164050 kcal Electronic energy + Delta-G solvation = -14309.675492 eV Core-core repulsion = 12085.957462 eV Total energy + Delta-G solvation = -2223.718030 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.90084 -37.48860 -34.98849 -32.48653 -30.87455 -28.95324 -28.14507 -27.13183 -23.12826 -22.44682 -21.16892 -19.74250 -18.92862 -16.94643 -16.48243 -16.17388 -15.47442 -14.90948 -14.85051 -14.57444 -14.25806 -13.96943 -13.45494 -13.26557 -13.17671 -12.92091 -12.85727 -12.68228 -12.52703 -12.33911 -11.96829 -11.87324 -11.68117 -11.42418 -11.22844 -11.14120 -10.78754 -10.46873 -9.05597 -8.31740 -6.35668 1.32030 1.33845 1.45341 2.32784 2.80516 3.03356 3.21003 3.90695 3.92701 4.06343 4.09195 4.29275 4.34358 4.43634 4.61728 4.72143 4.86832 4.87247 4.89229 4.90769 5.00820 5.08097 5.11959 5.13099 5.14643 5.18674 5.36249 5.41029 5.50139 5.54069 5.58324 5.64594 6.26812 6.28083 6.41940 6.72542 7.28785 8.85316 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.032647 B = 0.007819 C = 0.006834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.440383 B = 3580.386825 C = 4095.956942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.089 3.911 3 H 0.040 0.960 4 C -0.099 4.099 5 C -0.008 4.008 6 C -0.532 4.532 7 H 0.031 0.969 8 C 0.004 3.996 9 N -0.951 5.951 10 Si 0.951 3.049 11 H -0.265 1.265 12 H -0.284 1.284 13 H -0.249 1.249 14 N -0.657 5.657 15 C 0.021 3.979 16 H 0.111 0.889 17 C -0.207 4.207 18 C -0.116 4.116 19 C -0.109 4.109 20 C -0.101 4.101 21 H 0.060 0.940 22 H 0.061 0.939 23 H 0.053 0.947 24 H 0.051 0.949 25 H 0.057 0.943 26 H 0.013 0.987 27 H 0.017 0.983 28 H 0.266 0.734 29 H 0.339 0.661 30 H 0.082 0.918 31 H 0.104 0.896 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.061 0.939 35 H 0.041 0.959 36 H 0.065 0.935 37 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.399 6.357 17.560 20.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.020 4.020 3 H 0.058 0.942 4 C -0.137 4.137 5 C -0.045 4.045 6 C -0.570 4.570 7 H 0.049 0.951 8 C -0.192 4.192 9 N -0.592 5.592 10 Si 0.774 3.226 11 H -0.190 1.190 12 H -0.209 1.209 13 H -0.173 1.173 14 N -0.289 5.289 15 C -0.090 4.090 16 H 0.129 0.871 17 C -0.245 4.245 18 C -0.117 4.117 19 C -0.166 4.166 20 C -0.158 4.158 21 H 0.079 0.921 22 H 0.080 0.920 23 H 0.072 0.928 24 H 0.070 0.930 25 H 0.076 0.924 26 H 0.032 0.968 27 H 0.035 0.965 28 H 0.075 0.925 29 H 0.160 0.840 30 H 0.101 0.899 31 H 0.122 0.878 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.060 0.940 36 H 0.083 0.917 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.880 6.055 17.596 20.619 hybrid contribution 1.697 0.427 -0.568 1.839 sum -7.184 6.482 17.028 19.585 Atomic orbital electron populations 1.21706 0.93338 1.02001 1.01523 1.21581 0.96421 0.95333 0.88688 0.94158 1.21540 0.95531 1.00020 0.96625 1.19515 0.94515 0.95633 0.94854 1.21496 0.92667 1.34240 1.08568 0.95072 1.26020 1.00655 0.95652 0.96894 1.70068 1.15301 1.45315 1.28514 0.85654 0.78018 0.79952 0.78985 1.19032 1.20941 1.17307 1.60354 1.32972 1.31534 1.04011 1.22710 1.01465 0.96252 0.88534 0.87146 1.23786 0.91661 1.03329 1.05759 1.21889 0.98489 0.96232 0.95106 1.21334 0.99725 0.98971 0.96605 1.21130 1.01500 0.92028 1.01165 0.92084 0.91981 0.92753 0.92975 0.92418 0.96822 0.96466 0.92491 0.83978 0.89908 0.87776 0.91934 0.91230 0.92027 0.93961 0.91654 0.92521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.36 9.42 71.98 0.68 -2.69 16 2 C 0.09 2.81 2.54 44.92 0.11 2.92 16 3 H 0.04 1.27 7.73 -2.39 -0.02 1.25 16 4 C -0.10 -3.92 4.74 30.60 0.15 -3.77 16 5 C -0.01 -0.36 3.87 29.85 0.12 -0.25 16 6 C -0.53 -31.20 9.66 25.60 0.25 -30.96 16 7 H 0.03 2.01 7.99 -2.91 -0.02 1.99 16 8 C 0.00 0.27 5.47 84.65 0.46 0.73 16 9 N -0.95 -60.54 13.96 21.45 0.30 -60.24 16 10 Si 0.95 44.85 27.47 68.60 1.88 46.73 16 11 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 12 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 13 H -0.25 -10.97 6.54 99.48 0.65 -10.32 16 14 N -0.66 -20.07 5.96 -469.46 -2.80 -22.87 16 15 C 0.02 0.54 5.72 44.92 0.26 0.80 16 16 H 0.11 2.66 7.77 -2.39 -0.02 2.64 16 17 C -0.21 -4.95 9.52 30.60 0.29 -4.66 16 18 C -0.12 -2.56 2.70 -52.18 -0.14 -2.70 16 19 C -0.11 -1.84 9.85 71.98 0.71 -1.13 16 20 C -0.10 -2.29 9.31 71.98 0.67 -1.62 16 21 H 0.06 1.42 8.07 -2.39 -0.02 1.40 16 22 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 23 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 24 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 25 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 26 H 0.01 0.63 7.20 -2.39 -0.02 0.62 16 27 H 0.02 0.78 5.85 -2.39 -0.01 0.77 16 28 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 29 H 0.34 11.55 6.26 -89.70 -0.56 10.99 16 30 H 0.08 2.18 7.99 -2.39 -0.02 2.16 16 31 H 0.10 2.17 8.05 -2.39 -0.02 2.15 16 32 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.07 1.02 7.92 -2.38 -0.02 1.00 16 34 H 0.06 0.94 7.90 -2.39 -0.02 0.93 16 35 H 0.04 1.05 7.90 -2.39 -0.02 1.04 16 36 H 0.06 1.23 7.92 -2.39 -0.02 1.21 16 37 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -64.20 296.66 3.33 -60.87 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: 0.39 Total: 18.82 kcal Atomic # 6 Polarization: -46.86 SS G_CDS: 3.55 Total: -43.31 kcal Atomic # 7 Polarization: -80.61 SS G_CDS: -2.50 Total: -83.11 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 1.88 Total: 46.73 kcal Total: -64.20 3.33 -60.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172488567.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.705 kcal (2) G-P(sol) polarization free energy of solvation -64.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds