Wall clock time and date at job start Sun Mar 29 2020 21:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08995 * 109.47290 * 2 1 4 4 C 1.52996 * 109.47006 * 120.00054 * 2 1 3 5 5 C 1.52998 * 109.46929 * 185.00107 * 4 2 1 6 6 C 1.50706 * 109.47348 * 179.97438 * 5 4 2 7 7 H 1.08005 * 119.99758 * 359.97438 * 6 5 4 8 8 C 1.37871 * 120.00102 * 179.97438 * 6 5 4 9 9 N 1.31516 * 120.00217 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99766 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47483 * 269.99808 * 10 8 6 12 12 H 1.48499 * 109.47134 * 30.00322 * 10 8 6 13 13 H 1.48507 * 109.46904 * 150.00145 * 10 8 6 14 14 N 1.46900 * 109.47213 * 239.99872 * 2 1 3 15 15 C 1.46904 * 110.99762 * 84.99562 * 14 2 1 16 16 H 1.08997 * 115.55353 * 350.72600 * 15 14 2 17 17 C 1.53005 * 117.49404 * 136.39297 * 15 14 2 18 18 C 1.52999 * 117.49916 * 205.01460 * 15 14 2 19 19 C 1.52999 * 117.49787 * 0.02562 * 18 15 14 20 20 C 1.52999 * 117.49752 * 145.02463 * 18 15 14 21 21 H 1.08999 * 109.47043 * 300.00033 * 1 2 3 22 22 H 1.08992 * 109.46757 * 60.00015 * 1 2 3 23 23 H 1.08999 * 109.47047 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47441 * 65.00197 * 4 2 1 25 25 H 1.09002 * 109.47087 * 304.99643 * 4 2 1 26 26 H 1.09001 * 109.47671 * 60.00109 * 5 4 2 27 27 H 1.09006 * 109.47297 * 299.99829 * 5 4 2 28 28 H 0.97001 * 119.99646 * 359.97438 * 9 8 6 29 29 H 1.00904 * 110.99802 * 321.05003 * 14 2 1 30 30 H 1.09005 * 117.49726 * 214.97982 * 17 15 14 31 31 H 1.08999 * 117.50087 * 359.97438 * 17 15 14 32 32 H 1.08992 * 109.47440 * 60.00275 * 19 18 15 33 33 H 1.09006 * 109.47157 * 180.02562 * 19 18 15 34 34 H 1.09004 * 109.47321 * 299.99957 * 19 18 15 35 35 H 1.08996 * 109.47066 * 60.00225 * 20 18 15 36 36 H 1.09001 * 109.46846 * 179.97438 * 20 18 15 37 37 H 1.08995 * 109.47283 * 299.99685 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.6133 1.3137 6 6 4.0672 -1.3231 2.5445 7 1 3.3687 -1.8030 3.2140 8 6 5.4185 -1.3601 2.8157 9 7 6.2691 -0.7753 2.0007 10 14 6.0410 -2.2394 4.3417 11 1 6.0917 -1.2841 5.4776 12 1 5.1243 -3.3586 4.6767 13 1 7.4021 -2.7745 4.0840 14 7 2.0198 -0.6925 -1.1994 15 6 2.0824 0.2226 -2.3469 16 1 1.6230 1.1993 -2.1950 17 6 3.3266 0.1575 -3.2351 18 6 1.9926 -0.3910 -3.7456 19 6 1.8437 -1.9107 -3.8421 20 6 1.2644 0.4132 -4.8244 21 1 -0.3633 0.5138 0.8900 22 1 -0.3632 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 1.7517 -1.7715 1.2056 25 1 1.6054 -0.2617 2.1369 26 1 3.8533 0.4370 1.3573 27 1 3.9995 -1.0728 0.4259 28 1 5.9457 -0.3184 1.2085 29 1 1.4496 -1.4979 -1.4100 30 1 3.6854 1.0914 -3.6679 31 1 4.0987 -0.5639 -2.9678 32 1 0.9308 -2.2194 -3.3330 33 1 1.7928 -2.2050 -4.8904 34 1 2.7021 -2.3905 -3.3717 35 1 1.7641 1.3721 -4.9621 36 1 1.2785 -0.1415 -5.7626 37 1 0.2324 0.5821 -4.5172 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172488569.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:06 Heat of formation + Delta-G solvation = -26.356815 kcal Electronic energy + Delta-G solvation = -14256.895347 eV Core-core repulsion = 12032.865415 eV Total energy + Delta-G solvation = -2224.029932 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.97287 -37.49757 -35.34194 -32.12903 -30.40595 -29.16454 -28.18153 -26.60895 -23.67113 -22.34685 -21.56413 -19.85296 -18.79337 -17.02844 -16.36133 -15.64338 -15.55781 -15.10969 -14.83563 -14.44724 -14.15807 -14.00651 -13.68162 -13.39536 -13.30471 -13.04017 -12.70850 -12.59392 -12.50484 -12.09225 -11.97292 -11.89435 -11.71696 -11.59258 -11.28027 -10.56814 -10.50513 -10.47102 -9.06844 -8.64440 -6.33649 1.51201 1.61826 1.79261 2.58990 2.79408 3.07125 3.20585 3.82795 3.88372 4.00857 4.11904 4.19528 4.27712 4.38064 4.58554 4.64316 4.75159 4.81538 4.88001 4.90891 4.96586 5.00464 5.04615 5.05499 5.13362 5.15718 5.24855 5.31860 5.47597 5.50589 5.68373 6.08057 6.22992 6.28487 6.53026 6.64805 7.49322 8.75754 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.039318 B = 0.006577 C = 0.006039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.977732 B = 4256.202558 C = 4635.299732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.092 3.908 3 H 0.058 0.942 4 C -0.082 4.082 5 C 0.024 3.976 6 C -0.620 4.620 7 H 0.047 0.953 8 C -0.043 4.043 9 N -0.941 5.941 10 Si 1.121 2.879 11 H -0.272 1.272 12 H -0.269 1.269 13 H -0.283 1.283 14 N -0.662 5.662 15 C 0.018 3.982 16 H 0.100 0.900 17 C -0.181 4.181 18 C -0.123 4.123 19 C -0.114 4.114 20 C -0.110 4.110 21 H 0.065 0.935 22 H 0.064 0.936 23 H 0.061 0.939 24 H 0.047 0.953 25 H 0.051 0.949 26 H -0.029 1.029 27 H -0.001 1.001 28 H 0.254 0.746 29 H 0.344 0.656 30 H 0.099 0.901 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.043 0.957 35 H 0.059 0.941 36 H 0.073 0.927 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.834 1.006 -11.339 17.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.018 4.018 3 H 0.077 0.923 4 C -0.120 4.120 5 C -0.014 4.014 6 C -0.658 4.658 7 H 0.065 0.935 8 C -0.240 4.240 9 N -0.579 5.579 10 Si 0.942 3.058 11 H -0.197 1.197 12 H -0.194 1.194 13 H -0.208 1.208 14 N -0.293 5.293 15 C -0.092 4.092 16 H 0.117 0.883 17 C -0.219 4.219 18 C -0.125 4.125 19 C -0.171 4.171 20 C -0.167 4.167 21 H 0.084 0.916 22 H 0.083 0.917 23 H 0.080 0.920 24 H 0.066 0.934 25 H 0.069 0.931 26 H -0.011 1.011 27 H 0.017 0.983 28 H 0.063 0.937 29 H 0.165 0.835 30 H 0.118 0.882 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.095 0.905 34 H 0.062 0.938 35 H 0.078 0.922 36 H 0.092 0.908 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.837 0.687 -10.322 14.982 hybrid contribution -1.793 0.685 -0.973 2.152 sum -12.630 1.372 -11.294 16.999 Atomic orbital electron populations 1.22394 0.94961 1.02552 1.02620 1.21577 0.93670 0.96719 0.89848 0.92318 1.21348 0.95751 0.99153 0.95738 1.18983 0.93910 0.93301 0.95163 1.22644 0.95044 1.37666 1.10398 0.93486 1.27478 0.94324 0.96948 1.05236 1.70869 1.37757 1.35114 1.14152 0.82905 0.75574 0.75755 0.71571 1.19713 1.19371 1.20821 1.60115 1.57499 1.09200 1.02500 1.22561 1.02386 0.96898 0.87362 0.88260 1.23413 0.91794 1.02666 1.04065 1.21988 0.99345 0.96333 0.94795 1.21268 1.01497 0.91741 1.02575 1.21360 0.99659 0.99010 0.96654 0.91588 0.91663 0.91951 0.93444 0.93066 1.01072 0.98304 0.93707 0.83521 0.88221 0.90984 0.91797 0.90482 0.93771 0.92220 0.90836 0.91599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.25 9.16 71.98 0.66 -3.59 16 2 C 0.09 3.15 2.48 44.92 0.11 3.26 16 3 H 0.06 2.16 7.73 -2.39 -0.02 2.14 16 4 C -0.08 -3.53 4.83 30.59 0.15 -3.39 16 5 C 0.02 1.31 4.17 29.85 0.12 1.44 16 6 C -0.62 -37.59 9.11 25.60 0.23 -37.35 16 7 H 0.05 2.76 7.74 -2.91 -0.02 2.74 16 8 C -0.04 -2.65 5.46 84.65 0.46 -2.19 16 9 N -0.94 -61.77 13.65 21.45 0.29 -61.48 16 10 Si 1.12 52.68 29.90 68.60 2.05 54.74 16 11 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 12 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 13 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 14 N -0.66 -22.15 5.76 -469.45 -2.71 -24.85 16 15 C 0.02 0.53 5.67 44.92 0.25 0.78 16 16 H 0.10 2.69 7.77 -2.39 -0.02 2.67 16 17 C -0.18 -5.27 9.75 30.60 0.30 -4.98 16 18 C -0.12 -2.86 2.70 -52.18 -0.14 -3.01 16 19 C -0.11 -2.50 8.78 71.98 0.63 -1.87 16 20 C -0.11 -1.89 9.85 71.98 0.71 -1.19 16 21 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 22 H 0.06 1.44 8.07 -2.39 -0.02 1.42 16 23 H 0.06 1.50 8.13 -2.39 -0.02 1.48 16 24 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 25 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 26 H -0.03 -1.75 8.01 -2.39 -0.02 -1.77 16 27 H 0.00 -0.08 7.62 -2.38 -0.02 -0.10 16 28 H 0.25 17.05 7.22 -92.71 -0.67 16.38 16 29 H 0.34 10.37 6.94 -89.69 -0.62 9.75 16 30 H 0.10 2.60 8.05 -2.38 -0.02 2.58 16 31 H 0.07 2.49 8.05 -2.39 -0.02 2.47 16 32 H 0.06 1.29 7.59 -2.39 -0.02 1.27 16 33 H 0.08 1.38 7.93 -2.38 -0.02 1.36 16 34 H 0.04 1.16 7.90 -2.39 -0.02 1.14 16 35 H 0.06 1.00 7.90 -2.39 -0.02 0.98 16 36 H 0.07 1.08 7.92 -2.39 -0.02 1.06 16 37 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -69.51 299.75 3.62 -65.89 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: 0.48 Total: 17.78 kcal Atomic # 6 Polarization: -55.57 SS G_CDS: 3.49 Total: -52.08 kcal Atomic # 7 Polarization: -83.92 SS G_CDS: -2.41 Total: -86.33 kcal Atomic # 14 Polarization: 52.68 SS G_CDS: 2.05 Total: 54.74 kcal Total: -69.51 3.62 -65.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172488569.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.534 kcal (2) G-P(sol) polarization free energy of solvation -69.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds