Wall clock time and date at job start Sun Mar 29 2020 21:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.46979 * 2 1 4 4 C 1.52997 * 109.47366 * 119.99951 * 2 1 3 5 5 C 1.52999 * 109.47415 * 185.00278 * 4 2 1 6 6 C 1.50695 * 109.47057 * 180.02562 * 5 4 2 7 7 H 1.07999 * 120.00538 * 359.97438 * 6 5 4 8 8 C 1.37881 * 119.99661 * 179.97438 * 6 5 4 9 9 N 1.31520 * 120.00186 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00030 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.47297 * 89.99863 * 10 8 6 12 12 H 1.48503 * 109.47261 * 330.00044 * 10 8 6 13 13 H 1.48500 * 109.47454 * 210.00037 * 10 8 6 14 14 N 1.46898 * 109.47362 * 240.00165 * 2 1 3 15 15 C 1.46905 * 111.00044 * 84.99436 * 14 2 1 16 16 H 1.09004 * 115.54970 * 9.28260 * 15 14 2 17 17 C 1.52999 * 117.50190 * 223.60785 * 15 14 2 18 18 C 1.52995 * 60.00182 * 252.51334 * 17 15 14 19 19 C 1.53001 * 117.49837 * 252.51235 * 18 17 15 20 20 C 1.53006 * 117.50191 * 107.48895 * 18 17 15 21 21 H 1.09001 * 109.46979 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47589 * 299.99533 * 1 2 3 23 23 H 1.09000 * 109.47210 * 60.00116 * 1 2 3 24 24 H 1.09002 * 109.47302 * 65.00142 * 4 2 1 25 25 H 1.08998 * 109.46899 * 305.00279 * 4 2 1 26 26 H 1.09002 * 109.46997 * 59.99676 * 5 4 2 27 27 H 1.09000 * 109.46625 * 300.00101 * 5 4 2 28 28 H 0.97001 * 119.99697 * 359.97438 * 9 8 6 29 29 H 1.00897 * 111.00677 * 208.95213 * 14 2 1 30 30 H 1.09000 * 117.49394 * 0.02562 * 17 15 14 31 31 H 1.08998 * 117.49517 * 145.01786 * 17 15 14 32 32 H 1.09001 * 109.47425 * 128.62713 * 19 18 17 33 33 H 1.09005 * 109.47019 * 248.61720 * 19 18 17 34 34 H 1.08991 * 109.47100 * 8.62042 * 19 18 17 35 35 H 1.09005 * 109.46339 * 351.37561 * 20 18 17 36 36 H 1.08996 * 109.47134 * 111.37361 * 20 18 17 37 37 H 1.08999 * 109.47304 * 231.37966 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.6132 1.3137 6 6 4.0671 -1.3241 2.5438 7 1 3.3688 -1.8046 3.2130 8 6 5.4185 -1.3612 2.8150 9 7 6.2691 -0.7766 1.9999 10 14 6.0413 -2.2418 4.3401 11 1 6.3207 -3.6629 4.0118 12 1 5.0102 -2.1737 5.4068 13 1 7.2879 -1.5890 4.8144 14 7 2.0197 -0.6924 -1.1994 15 6 2.0824 0.2227 -2.3469 16 1 1.9207 1.2760 -2.1176 17 6 1.5682 -0.2945 -3.6919 18 6 3.0705 -0.1137 -3.4656 19 6 3.7565 1.0543 -4.1769 20 6 3.9177 -1.3774 -3.3035 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5137 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.7517 -1.7715 1.2056 25 1 1.6053 -0.2617 2.1369 26 1 3.8531 0.4371 1.3573 27 1 3.9994 -1.0727 0.4259 28 1 5.9458 -0.3196 1.2077 29 1 2.9173 -1.1204 -1.0288 30 1 1.1830 -1.3136 -3.7252 31 1 1.0686 0.4186 -4.3476 32 1 4.3279 1.6355 -3.4532 33 1 4.4279 0.6686 -4.9442 34 1 3.0028 1.6908 -4.6402 35 1 3.2634 -2.2459 -3.2262 36 1 4.5708 -1.4904 -4.1688 37 1 4.5221 -1.2963 -2.4001 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172488571.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:08 Heat of formation + Delta-G solvation = -9.078904 kcal Electronic energy + Delta-G solvation = -14354.245745 eV Core-core repulsion = 12130.965039 eV Total energy + Delta-G solvation = -2223.280705 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.77945 -36.07751 -33.25528 -30.41977 -28.96212 -28.20469 -27.22559 -24.59675 -21.86455 -21.10677 -19.73494 -18.76812 -16.74719 -15.62468 -15.28341 -14.46777 -13.76154 -13.69420 -13.33103 -13.07649 -12.63007 -12.48829 -12.26010 -12.13567 -11.95995 -11.51057 -11.41812 -11.21376 -11.03666 -10.79451 -10.53968 -10.17682 -10.12063 -9.84845 -9.62274 -9.38461 -8.51415 -8.32289 -7.89714 -6.35641 -4.04457 3.44096 3.47625 3.63411 3.91738 4.33551 4.55111 4.89024 4.99252 5.21135 5.34158 5.41183 5.48820 5.62005 5.72788 5.74996 5.81986 5.92096 5.98788 6.02135 6.08133 6.11537 6.18393 6.29937 6.31286 6.44612 6.46817 6.51228 6.78925 6.92955 7.37348 7.42858 7.61551 7.81938 8.23046 8.47539 8.89335 9.67548 11.04712 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.031544 B = 0.007494 C = 0.006420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.445275 B = 3735.274619 C = 4360.180297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.083 3.917 3 H 0.038 0.962 4 C -0.109 4.109 5 C 0.008 3.992 6 C -0.600 4.600 7 H 0.049 0.951 8 C 0.014 3.986 9 N -0.914 5.914 10 Si 1.071 2.929 11 H -0.288 1.288 12 H -0.289 1.289 13 H -0.285 1.285 14 N -0.655 5.655 15 C 0.031 3.969 16 H 0.093 0.907 17 C -0.166 4.166 18 C -0.145 4.145 19 C -0.113 4.113 20 C -0.115 4.115 21 H 0.057 0.943 22 H 0.050 0.950 23 H 0.045 0.955 24 H 0.058 0.942 25 H 0.056 0.944 26 H 0.003 0.997 27 H 0.005 0.995 28 H 0.267 0.733 29 H 0.353 0.647 30 H 0.095 0.905 31 H 0.087 0.913 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.053 0.947 35 H 0.061 0.939 36 H 0.057 0.943 37 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.699 2.081 -9.889 12.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.027 4.027 3 H 0.056 0.944 4 C -0.147 4.147 5 C -0.029 4.029 6 C -0.638 4.638 7 H 0.067 0.933 8 C -0.190 4.190 9 N -0.550 5.550 10 Si 0.899 3.101 11 H -0.214 1.214 12 H -0.215 1.215 13 H -0.210 1.210 14 N -0.290 5.290 15 C -0.080 4.080 16 H 0.111 0.889 17 C -0.204 4.204 18 C -0.146 4.146 19 C -0.171 4.171 20 C -0.172 4.172 21 H 0.076 0.924 22 H 0.069 0.931 23 H 0.064 0.936 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.021 0.979 27 H 0.023 0.977 28 H 0.078 0.922 29 H 0.177 0.823 30 H 0.114 0.886 31 H 0.105 0.895 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.932 1.432 -9.170 11.585 hybrid contribution -0.693 0.952 -0.656 1.347 sum -7.625 2.384 -9.826 12.664 Atomic orbital electron populations 1.21770 0.95483 1.01748 1.00239 1.21677 0.94797 0.95950 0.90233 0.94433 1.21719 0.98792 0.99651 0.94489 1.19249 0.90533 0.96072 0.97047 1.22075 0.94656 1.37739 1.09364 0.93280 1.25860 0.93518 0.96788 1.02813 1.70766 1.37263 1.33283 1.13678 0.83516 0.75633 0.76038 0.74867 1.21442 1.21499 1.21030 1.60340 1.33924 1.31001 1.03739 1.22573 1.02852 0.95189 0.87367 0.88910 1.23383 0.95058 1.02511 0.99477 1.21868 0.91474 0.98110 1.03132 1.21341 0.99917 0.96225 0.99571 1.21264 0.99077 0.95121 1.01787 0.92405 0.93064 0.93573 0.92317 0.92499 0.97885 0.97666 0.92215 0.82273 0.88646 0.89501 0.92345 0.92264 0.92777 0.91983 0.92416 0.91970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.05 9.42 37.15 0.35 -1.70 16 2 C 0.08 1.48 2.61 -67.72 -0.18 1.31 16 3 H 0.04 0.69 7.57 -51.93 -0.39 0.30 16 4 C -0.11 -2.30 4.74 -26.73 -0.13 -2.42 16 5 C 0.01 0.21 4.11 -27.89 -0.11 0.09 16 6 C -0.60 -17.32 9.11 -34.44 -0.31 -17.64 16 7 H 0.05 1.40 7.74 -52.49 -0.41 1.00 16 8 C 0.01 0.40 5.46 -17.82 -0.10 0.30 16 9 N -0.91 -28.16 13.65 55.43 0.76 -27.41 16 10 Si 1.07 25.65 29.90 -169.99 -5.08 20.57 16 11 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 13 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 14 N -0.66 -11.36 6.37 -99.74 -0.64 -12.00 16 15 C 0.03 0.47 5.74 -67.71 -0.39 0.09 16 16 H 0.09 1.40 7.60 -51.93 -0.39 1.00 16 17 C -0.17 -2.17 9.75 -26.73 -0.26 -2.43 16 18 C -0.14 -1.98 2.70 -154.51 -0.42 -2.40 16 19 C -0.11 -1.35 9.85 37.16 0.37 -0.98 16 20 C -0.12 -1.63 8.79 37.16 0.33 -1.30 16 21 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 22 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.05 0.65 8.07 -51.93 -0.42 0.23 16 24 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 25 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 26 H 0.00 0.08 8.01 -51.93 -0.42 -0.34 16 27 H 0.01 0.14 6.29 -51.93 -0.33 -0.19 16 28 H 0.27 8.21 7.22 -40.82 -0.29 7.91 16 29 H 0.35 6.76 4.94 -39.29 -0.19 6.57 16 30 H 0.10 1.28 8.05 -51.93 -0.42 0.87 16 31 H 0.09 0.99 8.05 -51.93 -0.42 0.57 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.06 0.64 7.92 -51.93 -0.41 0.23 16 34 H 0.05 0.57 7.90 -51.93 -0.41 0.16 16 35 H 0.06 0.87 7.90 -51.93 -0.41 0.46 16 36 H 0.06 0.71 7.92 -51.93 -0.41 0.30 16 37 H 0.06 0.99 7.59 -51.93 -0.39 0.60 16 LS Contribution 297.01 15.07 4.48 4.48 Total: -1.00 -29.90 297.01 -7.97 -37.86 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -6.63 Total: 3.58 kcal Atomic # 6 Polarization: -26.23 SS G_CDS: -0.85 Total: -27.09 kcal Atomic # 7 Polarization: -39.52 SS G_CDS: 0.12 Total: -39.40 kcal Atomic # 14 Polarization: 25.65 SS G_CDS: -5.08 Total: 20.57 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.90 -7.97 -37.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172488571.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.783 kcal (2) G-P(sol) polarization free energy of solvation -29.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds