Wall clock time and date at job start Sun Mar 29 2020 21:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.46979 * 2 1 4 4 C 1.52997 * 109.47366 * 119.99951 * 2 1 3 5 5 C 1.52999 * 109.47415 * 185.00278 * 4 2 1 6 6 C 1.50695 * 109.47057 * 180.02562 * 5 4 2 7 7 H 1.07999 * 120.00538 * 359.97438 * 6 5 4 8 8 C 1.37881 * 119.99661 * 179.97438 * 6 5 4 9 9 N 1.31520 * 120.00186 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00030 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.47297 * 89.99863 * 10 8 6 12 12 H 1.48503 * 109.47261 * 330.00044 * 10 8 6 13 13 H 1.48500 * 109.47454 * 210.00037 * 10 8 6 14 14 N 1.46898 * 109.47362 * 240.00165 * 2 1 3 15 15 C 1.46905 * 111.00044 * 84.99436 * 14 2 1 16 16 H 1.09004 * 115.54970 * 9.28260 * 15 14 2 17 17 C 1.52999 * 117.50190 * 223.60785 * 15 14 2 18 18 C 1.52995 * 60.00182 * 252.51334 * 17 15 14 19 19 C 1.53001 * 117.49837 * 252.51235 * 18 17 15 20 20 C 1.53006 * 117.50191 * 107.48895 * 18 17 15 21 21 H 1.09001 * 109.46979 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47589 * 299.99533 * 1 2 3 23 23 H 1.09000 * 109.47210 * 60.00116 * 1 2 3 24 24 H 1.09002 * 109.47302 * 65.00142 * 4 2 1 25 25 H 1.08998 * 109.46899 * 305.00279 * 4 2 1 26 26 H 1.09002 * 109.46997 * 59.99676 * 5 4 2 27 27 H 1.09000 * 109.46625 * 300.00101 * 5 4 2 28 28 H 0.97001 * 119.99697 * 359.97438 * 9 8 6 29 29 H 1.00897 * 111.00677 * 208.95213 * 14 2 1 30 30 H 1.09000 * 117.49394 * 0.02562 * 17 15 14 31 31 H 1.08998 * 117.49517 * 145.01786 * 17 15 14 32 32 H 1.09001 * 109.47425 * 128.62713 * 19 18 17 33 33 H 1.09005 * 109.47019 * 248.61720 * 19 18 17 34 34 H 1.08991 * 109.47100 * 8.62042 * 19 18 17 35 35 H 1.09005 * 109.46339 * 351.37561 * 20 18 17 36 36 H 1.08996 * 109.47134 * 111.37361 * 20 18 17 37 37 H 1.08999 * 109.47304 * 231.37966 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.6132 1.3137 6 6 4.0671 -1.3241 2.5438 7 1 3.3688 -1.8046 3.2130 8 6 5.4185 -1.3612 2.8150 9 7 6.2691 -0.7766 1.9999 10 14 6.0413 -2.2418 4.3401 11 1 6.3207 -3.6629 4.0118 12 1 5.0102 -2.1737 5.4068 13 1 7.2879 -1.5890 4.8144 14 7 2.0197 -0.6924 -1.1994 15 6 2.0824 0.2227 -2.3469 16 1 1.9207 1.2760 -2.1176 17 6 1.5682 -0.2945 -3.6919 18 6 3.0705 -0.1137 -3.4656 19 6 3.7565 1.0543 -4.1769 20 6 3.9177 -1.3774 -3.3035 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5137 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.7517 -1.7715 1.2056 25 1 1.6053 -0.2617 2.1369 26 1 3.8531 0.4371 1.3573 27 1 3.9994 -1.0727 0.4259 28 1 5.9458 -0.3196 1.2077 29 1 2.9173 -1.1204 -1.0288 30 1 1.1830 -1.3136 -3.7252 31 1 1.0686 0.4186 -4.3476 32 1 4.3279 1.6355 -3.4532 33 1 4.4279 0.6686 -4.9442 34 1 3.0028 1.6908 -4.6402 35 1 3.2634 -2.2459 -3.2262 36 1 4.5708 -1.4904 -4.1688 37 1 4.5221 -1.2963 -2.4001 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172488571.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:08 Heat of formation + Delta-G solvation = -26.492542 kcal Electronic energy + Delta-G solvation = -14355.000857 eV Core-core repulsion = 12130.965039 eV Total energy + Delta-G solvation = -2224.035817 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.99164 -37.60133 -35.32292 -32.04530 -30.49453 -29.38176 -28.27520 -26.61522 -23.73645 -22.35229 -21.26283 -19.92314 -18.93633 -16.95338 -16.69321 -15.79635 -15.61641 -15.09285 -14.88811 -14.56745 -14.27187 -13.88940 -13.64838 -13.40181 -13.22038 -12.94720 -12.72063 -12.66786 -12.48186 -12.11018 -12.08252 -11.96336 -11.89632 -11.53162 -11.27114 -10.68125 -10.56663 -10.48770 -9.22114 -8.70986 -6.41390 1.50669 1.59913 1.77786 2.54719 2.79018 3.05544 3.13935 3.78042 3.87027 3.99530 4.12974 4.16575 4.25210 4.38850 4.54530 4.62031 4.68220 4.80968 4.82565 4.92282 4.94795 4.97173 4.98348 5.00847 5.07232 5.13177 5.22800 5.32905 5.41304 5.42028 5.46401 5.98273 6.15444 6.21658 6.31642 6.55961 7.40220 8.69370 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.031544 B = 0.007494 C = 0.006420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.445275 B = 3735.274619 C = 4360.180297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.088 3.912 3 H 0.028 0.972 4 C -0.097 4.097 5 C 0.014 3.986 6 C -0.620 4.620 7 H 0.049 0.951 8 C -0.039 4.039 9 N -0.936 5.936 10 Si 1.120 2.880 11 H -0.272 1.272 12 H -0.269 1.269 13 H -0.282 1.282 14 N -0.657 5.657 15 C 0.006 3.994 16 H 0.094 0.906 17 C -0.142 4.142 18 C -0.148 4.148 19 C -0.111 4.111 20 C -0.113 4.113 21 H 0.057 0.943 22 H 0.062 0.938 23 H 0.060 0.940 24 H 0.054 0.946 25 H 0.058 0.942 26 H -0.021 1.021 27 H -0.007 1.007 28 H 0.254 0.746 29 H 0.337 0.663 30 H 0.092 0.908 31 H 0.111 0.889 32 H 0.046 0.954 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.058 0.942 36 H 0.075 0.925 37 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.782 1.903 -10.355 13.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.022 4.022 3 H 0.046 0.954 4 C -0.135 4.135 5 C -0.023 4.023 6 C -0.658 4.658 7 H 0.068 0.932 8 C -0.236 4.236 9 N -0.573 5.573 10 Si 0.941 3.059 11 H -0.197 1.197 12 H -0.194 1.194 13 H -0.207 1.207 14 N -0.290 5.290 15 C -0.105 4.105 16 H 0.112 0.888 17 C -0.181 4.181 18 C -0.149 4.149 19 C -0.168 4.168 20 C -0.171 4.171 21 H 0.076 0.924 22 H 0.081 0.919 23 H 0.079 0.921 24 H 0.073 0.927 25 H 0.077 0.923 26 H -0.002 1.002 27 H 0.011 0.989 28 H 0.063 0.937 29 H 0.159 0.841 30 H 0.111 0.889 31 H 0.130 0.870 32 H 0.065 0.935 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.077 0.923 36 H 0.094 0.906 37 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -8.052 1.265 -9.660 12.639 hybrid contribution -0.354 1.023 -0.551 1.215 sum -8.406 2.289 -10.211 13.422 Atomic orbital electron populations 1.21677 0.92806 1.02163 1.01598 1.21610 0.96765 0.94777 0.89028 0.95377 1.21561 0.95451 0.99935 0.96545 1.19145 0.93737 0.93945 0.95511 1.22521 0.95117 1.37788 1.10332 0.93242 1.27456 0.94236 0.96772 1.05180 1.70901 1.37694 1.34704 1.14019 0.82905 0.75663 0.75627 0.71727 1.19711 1.19411 1.20748 1.60454 1.32866 1.31578 1.04131 1.22693 1.05402 0.94968 0.87415 0.88834 1.23402 0.94280 1.02812 0.97558 1.21985 0.92114 0.98375 1.02425 1.21350 1.00413 0.95619 0.99438 1.21238 0.99107 0.95533 1.01185 0.92409 0.91861 0.92068 0.92702 0.92317 1.00232 0.98916 0.93660 0.84093 0.88908 0.87045 0.93542 0.91023 0.90986 0.92289 0.90581 0.94807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.56 9.42 71.98 0.68 -2.89 16 2 C 0.09 3.12 2.61 44.91 0.12 3.24 16 3 H 0.03 1.05 7.57 -2.39 -0.02 1.03 16 4 C -0.10 -4.14 4.74 30.59 0.15 -3.99 16 5 C 0.01 0.73 4.11 29.85 0.12 0.85 16 6 C -0.62 -36.29 9.11 25.60 0.23 -36.06 16 7 H 0.05 2.83 7.74 -2.91 -0.02 2.81 16 8 C -0.04 -2.31 5.46 84.65 0.46 -1.85 16 9 N -0.94 -58.91 13.65 21.45 0.29 -58.62 16 10 Si 1.12 51.16 29.90 68.60 2.05 53.21 16 11 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 12 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 13 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 14 N -0.66 -22.83 6.37 -469.47 -2.99 -25.82 16 15 C 0.01 0.17 5.74 44.91 0.26 0.43 16 16 H 0.09 2.73 7.60 -2.38 -0.02 2.71 16 17 C -0.14 -3.40 9.75 30.59 0.30 -3.10 16 18 C -0.15 -3.89 2.70 -52.18 -0.14 -4.03 16 19 C -0.11 -2.46 9.85 71.98 0.71 -1.75 16 20 C -0.11 -3.20 8.79 71.98 0.63 -2.57 16 21 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 22 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 23 H 0.06 1.57 8.07 -2.39 -0.02 1.56 16 24 H 0.05 2.36 8.14 -2.39 -0.02 2.34 16 25 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 26 H -0.02 -1.18 8.01 -2.39 -0.02 -1.20 16 27 H -0.01 -0.40 6.29 -2.39 -0.02 -0.42 16 28 H 0.25 16.22 7.22 -92.71 -0.67 15.55 16 29 H 0.34 13.38 4.94 -89.70 -0.44 12.93 16 30 H 0.09 2.29 8.05 -2.39 -0.02 2.27 16 31 H 0.11 2.13 8.05 -2.39 -0.02 2.11 16 32 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.07 1.40 7.92 -2.38 -0.02 1.38 16 34 H 0.07 1.33 7.90 -2.39 -0.02 1.31 16 35 H 0.06 1.66 7.90 -2.38 -0.02 1.64 16 36 H 0.08 1.82 7.92 -2.39 -0.02 1.80 16 37 H 0.03 1.13 7.59 -2.39 -0.02 1.11 16 Total: -1.00 -64.32 297.01 3.54 -60.79 By element: Atomic # 1 Polarization: 21.48 SS G_CDS: 0.67 Total: 22.15 kcal Atomic # 6 Polarization: -55.23 SS G_CDS: 3.51 Total: -51.71 kcal Atomic # 7 Polarization: -81.74 SS G_CDS: -2.70 Total: -84.44 kcal Atomic # 14 Polarization: 51.16 SS G_CDS: 2.05 Total: 53.21 kcal Total: -64.32 3.54 -60.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172488571.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.294 kcal (2) G-P(sol) polarization free energy of solvation -64.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds