Wall clock time and date at job start Sun Mar 29 2020 21:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47281 * 2 1 4 4 C 1.53001 * 109.47194 * 239.99145 * 2 1 3 5 5 C 1.53000 * 109.46886 * 175.00077 * 4 2 1 6 6 C 1.50703 * 109.46912 * 180.02562 * 5 4 2 7 7 H 1.07996 * 119.99751 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00001 * 180.02562 * 6 5 4 9 9 N 1.31512 * 119.99923 * 180.02562 * 8 6 5 10 10 Si 1.86804 * 120.00006 * 359.97438 * 8 6 5 11 11 H 1.48497 * 109.47093 * 90.00088 * 10 8 6 12 12 H 1.48495 * 109.46891 * 210.00496 * 10 8 6 13 13 H 1.48504 * 109.47189 * 330.00185 * 10 8 6 14 14 N 1.46909 * 109.46807 * 119.99744 * 2 1 3 15 15 C 1.46902 * 110.99504 * 274.99912 * 14 2 1 16 16 H 1.08990 * 115.55272 * 350.58091 * 15 14 2 17 17 C 1.52998 * 117.49510 * 136.25699 * 15 14 2 18 18 C 1.53004 * 117.49403 * 204.91114 * 15 14 2 19 19 C 1.53006 * 117.49933 * 0.02562 * 18 15 14 20 20 C 1.53006 * 117.49632 * 145.02118 * 18 15 14 21 21 H 1.09000 * 109.47237 * 300.00371 * 1 2 3 22 22 H 1.09002 * 109.46818 * 60.00551 * 1 2 3 23 23 H 1.09004 * 109.47242 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46652 * 55.00422 * 4 2 1 25 25 H 1.08992 * 109.47514 * 295.00511 * 4 2 1 26 26 H 1.09002 * 109.47398 * 300.00496 * 5 4 2 27 27 H 1.09001 * 109.47194 * 60.00677 * 5 4 2 28 28 H 0.97000 * 119.99684 * 180.02562 * 9 8 6 29 29 H 1.00897 * 110.99647 * 38.95193 * 14 2 1 30 30 H 1.09000 * 117.49950 * 214.97853 * 17 15 14 31 31 H 1.09000 * 117.50332 * 359.97438 * 17 15 14 32 32 H 1.08995 * 109.46821 * 60.00183 * 19 18 15 33 33 H 1.08998 * 109.46521 * 179.97438 * 19 18 15 34 34 H 1.09001 * 109.46878 * 299.99420 * 19 18 15 35 35 H 1.08999 * 109.46641 * 60.00116 * 20 18 15 36 36 H 1.08996 * 109.46563 * 179.97438 * 20 18 15 37 37 H 1.08999 * 109.47148 * 300.00122 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 3.5648 -0.6135 -1.3135 6 6 4.0672 -1.3235 -2.5442 7 1 3.3686 -1.8034 -3.2136 8 6 5.4185 -1.3605 -2.8155 9 7 5.8568 -1.9797 -3.8898 10 14 6.6266 -0.5299 -1.6579 11 1 7.0613 -1.4974 -0.6186 12 1 7.8088 -0.0648 -2.4268 13 1 5.9700 0.6329 -1.0081 14 7 2.0196 -0.6925 1.1996 15 6 2.0824 0.2228 2.3469 16 1 1.9232 1.2762 2.1172 17 6 1.5651 -0.2932 3.6912 18 6 3.0687 -0.1150 3.4668 19 6 3.9146 -1.3797 3.3056 20 6 3.7557 1.0522 4.1788 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0277 0.0005 24 1 1.6054 -0.2619 -2.1369 25 1 1.7516 -1.7716 -1.2054 26 1 3.8532 0.4368 -1.3572 27 1 3.9995 -1.0729 -0.4258 28 1 6.8075 -2.0061 -4.0804 29 1 1.4494 -1.4978 1.4101 30 1 1.0659 0.4209 4.3460 31 1 1.1779 -1.3116 3.7242 32 1 4.5202 -1.2991 2.4029 33 1 4.5669 -1.4932 4.1714 34 1 3.2595 -2.2474 3.2275 35 1 3.0023 1.6898 4.6411 36 1 4.4252 0.6655 4.9471 37 1 4.3287 1.6324 3.4555 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172488573.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:09 Heat of formation + Delta-G solvation = -19.014450 kcal Electronic energy + Delta-G solvation = -14380.571243 eV Core-core repulsion = 12156.859700 eV Total energy + Delta-G solvation = -2223.711543 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.86153 -37.37489 -35.00610 -32.61529 -30.60595 -28.89880 -28.14027 -27.06860 -22.99386 -22.50166 -21.40721 -19.72614 -18.81059 -16.85855 -16.35169 -16.06240 -15.26645 -14.86815 -14.69129 -14.58146 -14.19635 -14.12729 -13.61583 -13.29877 -13.25142 -12.93846 -12.90949 -12.73895 -12.50186 -12.00904 -11.90553 -11.77734 -11.61291 -11.46765 -11.23387 -11.07691 -10.72156 -10.43539 -8.91007 -8.26978 -6.28651 1.35822 1.36953 1.50696 2.38462 2.87108 3.09367 3.21245 3.93605 3.97986 4.03395 4.16842 4.29143 4.36866 4.44110 4.68811 4.73710 4.84360 4.88960 4.92704 4.97846 4.99635 5.07885 5.11946 5.16708 5.18122 5.24585 5.36872 5.39441 5.55731 5.60859 5.71427 5.77367 6.32014 6.34736 6.60126 6.80057 7.35747 8.90198 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.026713 B = 0.009144 C = 0.007322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.907948 B = 3061.487924 C = 3823.047517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.093 3.907 3 H 0.069 0.931 4 C -0.085 4.085 5 C 0.004 3.996 6 C -0.529 4.529 7 H 0.029 0.971 8 C 0.003 3.997 9 N -0.955 5.955 10 Si 0.953 3.047 11 H -0.269 1.269 12 H -0.284 1.284 13 H -0.252 1.252 14 N -0.658 5.658 15 C 0.024 3.976 16 H 0.106 0.894 17 C -0.178 4.178 18 C -0.137 4.137 19 C -0.102 4.102 20 C -0.111 4.111 21 H 0.065 0.935 22 H 0.062 0.938 23 H 0.058 0.942 24 H 0.049 0.951 25 H 0.044 0.956 26 H 0.004 0.996 27 H 0.024 0.976 28 H 0.264 0.736 29 H 0.344 0.656 30 H 0.107 0.893 31 H 0.096 0.904 32 H 0.037 0.963 33 H 0.060 0.940 34 H 0.053 0.947 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.974 6.288 17.928 21.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.017 4.017 3 H 0.087 0.913 4 C -0.123 4.123 5 C -0.033 4.033 6 C -0.568 4.568 7 H 0.047 0.953 8 C -0.193 4.193 9 N -0.596 5.596 10 Si 0.777 3.223 11 H -0.194 1.194 12 H -0.210 1.210 13 H -0.175 1.175 14 N -0.288 5.288 15 C -0.087 4.087 16 H 0.124 0.876 17 C -0.217 4.217 18 C -0.139 4.139 19 C -0.159 4.159 20 C -0.168 4.168 21 H 0.084 0.916 22 H 0.081 0.919 23 H 0.077 0.923 24 H 0.067 0.933 25 H 0.063 0.937 26 H 0.022 0.978 27 H 0.042 0.958 28 H 0.073 0.927 29 H 0.164 0.836 30 H 0.126 0.874 31 H 0.114 0.886 32 H 0.056 0.944 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -8.173 6.318 17.640 20.442 hybrid contribution -0.091 -0.011 -0.124 0.154 sum -8.264 6.307 17.515 20.368 Atomic orbital electron populations 1.22409 0.95454 1.02343 1.02493 1.21592 0.93398 0.97093 0.89602 0.91300 1.21347 0.95885 0.99268 0.95849 1.19335 0.94619 0.94902 0.94491 1.21667 0.92577 1.33849 1.08659 0.95275 1.25991 1.00668 0.95815 0.96866 1.70080 1.15110 1.45805 1.28645 0.85619 0.77878 0.80006 0.78845 1.19400 1.21032 1.17539 1.60091 1.57157 1.08948 1.02585 1.22618 1.04176 0.96120 0.85759 0.87608 1.23735 0.95570 1.02701 0.99669 1.21910 0.91569 0.98243 1.02143 1.21112 0.98963 0.95273 1.00555 1.21329 1.00320 0.95823 0.99347 0.91624 0.91897 0.92297 0.93263 0.93684 0.97777 0.95789 0.92678 0.83578 0.87434 0.88590 0.94389 0.92068 0.92782 0.91287 0.91570 0.93263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.95 9.16 71.98 0.66 -3.29 16 2 C 0.09 2.82 2.55 44.91 0.11 2.94 16 3 H 0.07 2.15 7.57 -2.39 -0.02 2.13 16 4 C -0.09 -3.42 4.83 30.59 0.15 -3.27 16 5 C 0.00 0.20 3.93 29.85 0.12 0.31 16 6 C -0.53 -32.13 9.66 25.60 0.25 -31.88 16 7 H 0.03 1.93 7.99 -2.91 -0.02 1.90 16 8 C 0.00 0.16 5.47 84.65 0.46 0.62 16 9 N -0.95 -62.27 13.96 21.45 0.30 -61.97 16 10 Si 0.95 47.26 27.47 68.60 1.88 49.15 16 11 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 12 H -0.28 -13.69 7.11 99.48 0.71 -12.98 16 13 H -0.25 -11.84 6.54 99.48 0.65 -11.18 16 14 N -0.66 -19.12 5.35 -469.46 -2.51 -21.63 16 15 C 0.02 0.59 5.79 44.92 0.26 0.85 16 16 H 0.11 2.52 7.60 -2.39 -0.02 2.50 16 17 C -0.18 -3.42 9.52 30.62 0.29 -3.13 16 18 C -0.14 -3.20 2.70 -52.15 -0.14 -3.34 16 19 C -0.10 -2.67 9.31 71.98 0.67 -2.00 16 20 C -0.11 -2.21 9.85 71.98 0.71 -1.50 16 21 H 0.06 1.31 8.07 -2.39 -0.02 1.29 16 22 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 23 H 0.06 1.34 8.13 -2.39 -0.02 1.32 16 24 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 25 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 26 H 0.00 0.20 7.20 -2.39 -0.02 0.18 16 27 H 0.02 1.20 7.18 -2.39 -0.02 1.18 16 28 H 0.26 16.07 8.31 -92.71 -0.77 15.30 16 29 H 0.34 9.10 8.26 -89.70 -0.74 8.36 16 30 H 0.11 1.68 8.05 -2.39 -0.02 1.66 16 31 H 0.10 1.78 8.00 -2.39 -0.02 1.76 16 32 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.06 1.39 7.92 -2.39 -0.02 1.37 16 34 H 0.05 1.37 7.90 -2.39 -0.02 1.35 16 35 H 0.07 1.12 7.90 -2.39 -0.02 1.10 16 36 H 0.07 1.19 7.92 -2.39 -0.02 1.17 16 37 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -67.87 299.02 3.42 -64.45 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: 0.21 Total: 13.70 kcal Atomic # 6 Polarization: -47.23 SS G_CDS: 3.54 Total: -43.69 kcal Atomic # 7 Polarization: -81.39 SS G_CDS: -2.21 Total: -83.60 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 1.88 Total: 49.15 kcal Total: -67.87 3.42 -64.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172488573.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.435 kcal (2) G-P(sol) polarization free energy of solvation -67.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds