Wall clock time and date at job start Sun Mar 29 2020 21:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.46868 * 2 1 4 4 C 1.52997 * 109.47006 * 240.00417 * 2 1 3 5 5 C 1.53000 * 109.47420 * 174.44218 * 4 2 1 6 6 C 1.50697 * 109.47276 * 175.23379 * 5 4 2 7 7 H 1.07999 * 120.00253 * 359.97438 * 6 5 4 8 8 C 1.37883 * 120.00096 * 179.97438 * 6 5 4 9 9 N 1.31522 * 119.99545 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00128 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47000 * 179.97438 * 10 8 6 12 12 H 1.48501 * 109.47060 * 60.00237 * 10 8 6 13 13 H 1.48497 * 109.47430 * 299.99909 * 10 8 6 14 14 N 1.46897 * 109.47370 * 120.00120 * 2 1 3 15 15 C 1.47437 * 111.00436 * 296.91540 * 14 2 1 16 16 C 1.54313 * 107.23806 * 123.25196 * 15 14 2 17 17 C 1.55147 * 103.01507 * 22.28940 * 16 15 14 18 18 H 1.09003 * 110.99425 * 82.43738 * 17 16 15 19 19 C 1.53002 * 110.98925 * 206.24993 * 17 16 15 20 20 C 1.47845 * 110.99833 * 57.75882 * 14 2 1 21 21 H 1.08996 * 109.47505 * 53.06236 * 1 2 3 22 22 H 1.09003 * 109.46793 * 173.06432 * 1 2 3 23 23 H 1.09002 * 109.46743 * 293.06238 * 1 2 3 24 24 H 1.09004 * 109.47436 * 54.43903 * 4 2 1 25 25 H 1.09007 * 109.46894 * 294.44190 * 4 2 1 26 26 H 1.09001 * 109.47011 * 55.23044 * 5 4 2 27 27 H 1.09005 * 109.46878 * 295.23283 * 5 4 2 28 28 H 0.96998 * 119.99870 * 359.97438 * 9 8 6 29 29 H 1.09004 * 109.89064 * 242.66857 * 15 14 2 30 30 H 1.09007 * 109.88654 * 3.68854 * 15 14 2 31 31 H 1.08999 * 110.70755 * 140.66333 * 16 15 14 32 32 H 1.08999 * 110.71186 * 263.73199 * 16 15 14 33 33 H 1.09008 * 109.46926 * 58.54676 * 19 17 16 34 34 H 1.08995 * 109.47033 * 178.54142 * 19 17 16 35 35 H 1.08994 * 109.47557 * 298.55084 * 19 17 16 36 36 H 1.09006 * 110.37615 * 332.46378 * 20 14 2 37 37 H 1.08998 * 110.37843 * 94.80885 * 20 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5636 -0.6013 -1.3212 6 6 4.0766 -1.4089 -2.4855 7 1 3.3852 -1.9536 -3.1113 8 6 5.4288 -1.4525 -2.7518 9 7 6.2707 -0.7888 -1.9899 10 14 6.0648 -2.4541 -4.1945 11 1 7.5435 -2.3367 -4.2651 12 1 5.4675 -1.9423 -5.4541 13 1 5.6891 -3.8791 -4.0118 14 7 2.0197 -0.6925 1.1994 15 6 1.6085 0.0174 2.4244 16 6 0.8199 -0.9863 3.2917 17 6 1.3150 -2.3617 2.7717 18 1 2.2612 -2.6376 3.2371 19 6 0.2589 -3.4455 2.9980 20 6 1.5021 -2.0760 1.2608 21 1 -0.3634 0.6175 -0.8213 22 1 -0.3633 -1.0202 -0.1241 23 1 -0.3633 0.4026 0.9456 24 1 1.5976 -0.2680 -2.1365 25 1 1.7602 -1.7736 -1.2009 26 1 4.0017 -0.9777 -0.3967 27 1 3.8399 0.4446 -1.4547 28 1 5.9404 -0.2685 -1.2409 29 1 2.4890 0.3636 2.9657 30 1 0.9748 0.8659 2.1662 31 1 1.0665 -0.8615 4.3460 32 1 -0.2525 -0.8742 3.1322 33 1 -0.6631 -3.1665 2.4879 34 1 0.6209 -4.3939 2.6012 35 1 0.0665 -3.5480 4.0659 36 1 0.5472 -2.1475 0.7399 37 1 2.2233 -2.7705 0.8299 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172490977.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:58 Heat of formation + Delta-G solvation = -21.763565 kcal Electronic energy + Delta-G solvation = -14663.697427 eV Core-core repulsion = 12439.866673 eV Total energy + Delta-G solvation = -2223.830754 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.43908 -35.14532 -33.12553 -31.03189 -29.00041 -28.58680 -25.75665 -24.56693 -22.09251 -20.96736 -20.29749 -18.92861 -16.52173 -15.93622 -15.57905 -14.31517 -13.92277 -13.62870 -13.22543 -13.12119 -12.92408 -12.53215 -12.34547 -12.14906 -11.81289 -11.56244 -11.18979 -10.95570 -10.79789 -10.63556 -10.50749 -10.39995 -10.15961 -10.01865 -9.72692 -9.51090 -8.34655 -8.17142 -7.76696 -6.20829 -3.87961 3.50333 3.52978 3.71527 4.33537 4.65284 4.69558 4.81646 4.99187 5.28021 5.38411 5.49704 5.53307 5.56453 5.56988 5.63902 5.72898 5.80656 5.86196 5.94586 6.06953 6.08146 6.18776 6.22024 6.33790 6.43176 6.47019 6.58502 6.81933 7.17642 7.43496 7.56294 7.68414 7.89165 8.40870 8.64337 9.06097 9.84056 11.20209 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.039541 B = 0.007174 C = 0.006857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.956475 B = 3902.157625 C = 4082.231965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.074 3.926 3 H 0.075 0.925 4 C -0.094 4.094 5 C 0.015 3.985 6 C -0.600 4.600 7 H 0.043 0.957 8 C 0.013 3.987 9 N -0.917 5.917 10 Si 1.066 2.934 11 H -0.283 1.283 12 H -0.290 1.290 13 H -0.289 1.289 14 N -0.512 5.512 15 C 0.038 3.962 16 C -0.135 4.135 17 C -0.104 4.104 18 H 0.082 0.918 19 C -0.139 4.139 20 C 0.045 3.955 21 H 0.057 0.943 22 H 0.056 0.944 23 H 0.049 0.951 24 H 0.047 0.953 25 H 0.049 0.951 26 H 0.024 0.976 27 H -0.001 1.001 28 H 0.270 0.730 29 H 0.072 0.928 30 H 0.052 0.948 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.052 0.948 34 H 0.057 0.943 35 H 0.053 0.947 36 H 0.050 0.950 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.595 -1.185 9.395 15.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.035 4.035 3 H 0.093 0.907 4 C -0.132 4.132 5 C -0.022 4.022 6 C -0.639 4.639 7 H 0.062 0.938 8 C -0.190 4.190 9 N -0.553 5.553 10 Si 0.895 3.105 11 H -0.209 1.209 12 H -0.216 1.216 13 H -0.216 1.216 14 N -0.235 5.235 15 C -0.090 4.090 16 C -0.174 4.174 17 C -0.123 4.123 18 H 0.100 0.900 19 C -0.197 4.197 20 C -0.083 4.083 21 H 0.076 0.924 22 H 0.075 0.925 23 H 0.068 0.932 24 H 0.066 0.934 25 H 0.068 0.932 26 H 0.043 0.957 27 H 0.017 0.983 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.070 0.930 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -10.657 -1.620 8.539 13.752 hybrid contribution -2.365 0.536 0.798 2.553 sum -13.023 -1.084 9.337 16.061 Atomic orbital electron populations 1.22528 0.98808 1.01752 1.01236 1.22026 0.91181 0.98560 0.91685 0.90680 1.21558 0.99863 0.98510 0.93256 1.19134 0.89910 0.95838 0.97298 1.22131 0.94597 1.32651 1.14522 0.93845 1.25775 0.93599 0.97853 1.01817 1.70747 1.37436 1.29510 1.17633 0.83593 0.76121 0.75654 0.75119 1.20860 1.21645 1.21616 1.63721 1.57105 1.01587 1.01086 1.22825 0.98299 0.96300 0.91528 1.22830 0.99536 0.95310 0.99706 1.22317 0.99091 0.94473 0.96458 0.89995 1.21698 0.98325 0.98537 1.01157 1.23148 0.99118 0.91116 0.94881 0.92414 0.92518 0.93203 0.93380 0.93190 0.95738 0.98299 0.91956 0.90996 0.92953 0.91358 0.91914 0.92927 0.92405 0.92788 0.93173 0.90090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.68 8.54 37.16 0.32 -2.36 16 2 C 0.07 1.32 2.19 -67.71 -0.15 1.17 16 3 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 4 C -0.09 -2.03 4.53 -26.73 -0.12 -2.15 16 5 C 0.02 0.41 4.23 -27.88 -0.12 0.29 16 6 C -0.60 -17.90 9.11 -34.44 -0.31 -18.21 16 7 H 0.04 1.27 7.74 -52.49 -0.41 0.87 16 8 C 0.01 0.39 5.46 -17.81 -0.10 0.29 16 9 N -0.92 -29.29 13.65 55.43 0.76 -28.53 16 10 Si 1.07 26.29 29.90 -169.99 -5.08 21.20 16 11 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 12 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 13 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 14 N -0.51 -8.92 4.58 -223.29 -1.02 -9.94 16 15 C 0.04 0.55 6.24 -2.84 -0.02 0.53 16 16 C -0.14 -1.61 6.41 -24.91 -0.16 -1.77 16 17 C -0.10 -1.34 3.63 -88.48 -0.32 -1.66 16 18 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 19 C -0.14 -1.48 9.30 37.16 0.35 -1.13 16 20 C 0.04 0.71 4.62 -2.30 -0.01 0.70 16 21 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 22 H 0.06 0.81 6.21 -51.93 -0.32 0.49 16 23 H 0.05 0.65 6.36 -51.93 -0.33 0.32 16 24 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 25 H 0.05 1.08 7.02 -51.93 -0.36 0.72 16 26 H 0.02 0.70 7.51 -51.93 -0.39 0.31 16 27 H 0.00 -0.04 8.01 -51.93 -0.42 -0.45 16 28 H 0.27 8.66 7.22 -40.82 -0.29 8.36 16 29 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.05 0.70 6.26 -51.92 -0.33 0.38 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.70 8.04 -51.93 -0.42 0.28 16 33 H 0.05 0.54 8.10 -51.92 -0.42 0.12 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.05 0.77 5.34 -51.93 -0.28 0.49 16 37 H 0.08 1.47 8.09 -51.93 -0.42 1.05 16 LS Contribution 284.78 15.07 4.29 4.29 Total: -1.00 -31.67 284.78 -8.27 -39.94 By element: Atomic # 1 Polarization: 3.91 SS G_CDS: -6.56 Total: -2.66 kcal Atomic # 6 Polarization: -23.65 SS G_CDS: -0.65 Total: -24.30 kcal Atomic # 7 Polarization: -38.21 SS G_CDS: -0.27 Total: -38.48 kcal Atomic # 14 Polarization: 26.29 SS G_CDS: -5.08 Total: 21.20 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -31.67 -8.27 -39.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172490977.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.176 kcal (2) G-P(sol) polarization free energy of solvation -31.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds