Wall clock time and date at job start Sun Mar 29 2020 21:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.46868 * 2 1 4 4 C 1.52997 * 109.47006 * 240.00417 * 2 1 3 5 5 C 1.53000 * 109.47420 * 174.44218 * 4 2 1 6 6 C 1.50697 * 109.47276 * 175.23379 * 5 4 2 7 7 H 1.07999 * 120.00253 * 359.97438 * 6 5 4 8 8 C 1.37883 * 120.00096 * 179.97438 * 6 5 4 9 9 N 1.31522 * 119.99545 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00128 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47000 * 179.97438 * 10 8 6 12 12 H 1.48501 * 109.47060 * 60.00237 * 10 8 6 13 13 H 1.48497 * 109.47430 * 299.99909 * 10 8 6 14 14 N 1.46897 * 109.47370 * 120.00120 * 2 1 3 15 15 C 1.47437 * 111.00436 * 296.91540 * 14 2 1 16 16 C 1.54313 * 107.23806 * 123.25196 * 15 14 2 17 17 C 1.55147 * 103.01507 * 22.28940 * 16 15 14 18 18 H 1.09003 * 110.99425 * 82.43738 * 17 16 15 19 19 C 1.53002 * 110.98925 * 206.24993 * 17 16 15 20 20 C 1.47845 * 110.99833 * 57.75882 * 14 2 1 21 21 H 1.08996 * 109.47505 * 53.06236 * 1 2 3 22 22 H 1.09003 * 109.46793 * 173.06432 * 1 2 3 23 23 H 1.09002 * 109.46743 * 293.06238 * 1 2 3 24 24 H 1.09004 * 109.47436 * 54.43903 * 4 2 1 25 25 H 1.09007 * 109.46894 * 294.44190 * 4 2 1 26 26 H 1.09001 * 109.47011 * 55.23044 * 5 4 2 27 27 H 1.09005 * 109.46878 * 295.23283 * 5 4 2 28 28 H 0.96998 * 119.99870 * 359.97438 * 9 8 6 29 29 H 1.09004 * 109.89064 * 242.66857 * 15 14 2 30 30 H 1.09007 * 109.88654 * 3.68854 * 15 14 2 31 31 H 1.08999 * 110.70755 * 140.66333 * 16 15 14 32 32 H 1.08999 * 110.71186 * 263.73199 * 16 15 14 33 33 H 1.09008 * 109.46926 * 58.54676 * 19 17 16 34 34 H 1.08995 * 109.47033 * 178.54142 * 19 17 16 35 35 H 1.08994 * 109.47557 * 298.55084 * 19 17 16 36 36 H 1.09006 * 110.37615 * 332.46378 * 20 14 2 37 37 H 1.08998 * 110.37843 * 94.80885 * 20 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5636 -0.6013 -1.3212 6 6 4.0766 -1.4089 -2.4855 7 1 3.3852 -1.9536 -3.1113 8 6 5.4288 -1.4525 -2.7518 9 7 6.2707 -0.7888 -1.9899 10 14 6.0648 -2.4541 -4.1945 11 1 7.5435 -2.3367 -4.2651 12 1 5.4675 -1.9423 -5.4541 13 1 5.6891 -3.8791 -4.0118 14 7 2.0197 -0.6925 1.1994 15 6 1.6085 0.0174 2.4244 16 6 0.8199 -0.9863 3.2917 17 6 1.3150 -2.3617 2.7717 18 1 2.2612 -2.6376 3.2371 19 6 0.2589 -3.4455 2.9980 20 6 1.5021 -2.0760 1.2608 21 1 -0.3634 0.6175 -0.8213 22 1 -0.3633 -1.0202 -0.1241 23 1 -0.3633 0.4026 0.9456 24 1 1.5976 -0.2680 -2.1365 25 1 1.7602 -1.7736 -1.2009 26 1 4.0017 -0.9777 -0.3967 27 1 3.8399 0.4446 -1.4547 28 1 5.9404 -0.2685 -1.2409 29 1 2.4890 0.3636 2.9657 30 1 0.9748 0.8659 2.1662 31 1 1.0665 -0.8615 4.3460 32 1 -0.2525 -0.8742 3.1322 33 1 -0.6631 -3.1665 2.4879 34 1 0.6209 -4.3939 2.6012 35 1 0.0665 -3.5480 4.0659 36 1 0.5472 -2.1475 0.7399 37 1 2.2233 -2.7705 0.8299 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172490977.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:58 Heat of formation + Delta-G solvation = -41.515418 kcal Electronic energy + Delta-G solvation = -14664.553931 eV Core-core repulsion = 12439.866673 eV Total energy + Delta-G solvation = -2224.687258 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.68815 -36.71927 -35.08755 -32.48402 -30.62746 -29.77902 -26.85437 -26.56871 -23.80857 -22.59719 -21.35296 -20.34285 -18.81336 -17.08207 -16.92301 -15.77412 -15.57403 -15.11102 -14.82484 -14.68033 -14.16033 -14.03974 -13.75333 -13.45397 -13.01152 -12.96771 -12.71556 -12.59387 -12.22268 -11.97129 -11.84657 -11.77228 -11.62342 -11.58606 -11.42877 -11.41118 -10.56462 -10.50050 -9.05978 -8.65663 -6.34831 1.50629 1.60373 1.79569 2.58335 3.08698 3.19424 3.63708 3.73928 3.94372 4.00532 4.20049 4.32366 4.36293 4.46666 4.57789 4.59846 4.68749 4.78192 4.81460 4.85591 4.86394 4.98825 5.00591 5.08020 5.15640 5.20238 5.27988 5.34101 5.45468 5.49182 5.64884 6.05555 6.18292 6.24243 6.29921 6.63103 7.47947 8.74707 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.039541 B = 0.007174 C = 0.006857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.956475 B = 3902.157625 C = 4082.231965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.079 3.921 3 H 0.064 0.936 4 C -0.083 4.083 5 C 0.022 3.978 6 C -0.620 4.620 7 H 0.046 0.954 8 C -0.043 4.043 9 N -0.939 5.939 10 Si 1.118 2.882 11 H -0.282 1.282 12 H -0.268 1.268 13 H -0.269 1.269 14 N -0.545 5.545 15 C 0.036 3.964 16 C -0.123 4.123 17 C -0.101 4.101 18 H 0.070 0.930 19 C -0.134 4.134 20 C 0.045 3.955 21 H 0.066 0.934 22 H 0.060 0.940 23 H 0.070 0.930 24 H 0.050 0.950 25 H 0.046 0.954 26 H -0.001 1.001 27 H -0.026 1.026 28 H 0.254 0.746 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.059 0.941 34 H 0.054 0.946 35 H 0.072 0.928 36 H 0.059 0.941 37 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.476 -1.795 9.663 17.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.029 4.029 3 H 0.082 0.918 4 C -0.121 4.121 5 C -0.015 4.015 6 C -0.658 4.658 7 H 0.064 0.936 8 C -0.239 4.239 9 N -0.577 5.577 10 Si 0.939 3.061 11 H -0.208 1.208 12 H -0.193 1.193 13 H -0.194 1.194 14 N -0.269 5.269 15 C -0.092 4.092 16 C -0.161 4.161 17 C -0.120 4.120 18 H 0.088 0.912 19 C -0.191 4.191 20 C -0.083 4.083 21 H 0.085 0.915 22 H 0.079 0.921 23 H 0.089 0.911 24 H 0.069 0.931 25 H 0.065 0.935 26 H 0.017 0.983 27 H -0.008 1.008 28 H 0.063 0.937 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.105 0.895 32 H 0.098 0.902 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.091 0.909 36 H 0.077 0.923 37 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -12.571 -2.221 8.827 15.520 hybrid contribution -1.740 0.755 0.735 2.034 sum -14.311 -1.466 9.562 17.274 Atomic orbital electron populations 1.22383 0.95490 1.02389 1.02810 1.21819 0.93704 0.97175 0.90246 0.91822 1.21387 0.95969 0.99001 0.95754 1.18994 0.93683 0.93546 0.95249 1.22590 0.95154 1.32800 1.15254 0.93554 1.27483 0.94377 0.98119 1.03939 1.70898 1.37865 1.30839 1.18103 0.82947 0.75668 0.75141 0.72391 1.20771 1.19310 1.19449 1.63571 1.58646 1.02603 1.02090 1.22873 0.98676 0.97108 0.90516 1.22785 0.99974 0.93243 1.00127 1.22290 0.99613 0.96161 0.93912 0.91165 1.21661 0.97588 0.97368 1.02520 1.23096 0.98204 0.89737 0.97244 0.91490 0.92148 0.91105 0.93109 0.93489 0.98263 1.00812 0.93700 0.91818 0.91791 0.89465 0.90212 0.92176 0.92714 0.90885 0.92271 0.93710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.59 8.54 71.98 0.61 -3.97 16 2 C 0.08 2.81 2.19 44.92 0.10 2.91 16 3 H 0.06 2.38 8.14 -2.38 -0.02 2.36 16 4 C -0.08 -3.66 4.53 30.59 0.14 -3.52 16 5 C 0.02 1.25 4.23 29.85 0.13 1.38 16 6 C -0.62 -37.70 9.11 25.60 0.23 -37.46 16 7 H 0.05 2.73 7.74 -2.91 -0.02 2.70 16 8 C -0.04 -2.60 5.46 84.65 0.46 -2.14 16 9 N -0.94 -61.64 13.65 21.45 0.29 -61.35 16 10 Si 1.12 52.57 29.90 68.60 2.05 54.63 16 11 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 12 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 13 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 14 N -0.55 -19.07 4.58 -860.37 -3.94 -23.01 16 15 C 0.04 0.97 6.24 86.65 0.54 1.51 16 16 C -0.12 -2.57 6.41 31.78 0.20 -2.37 16 17 C -0.10 -2.44 3.63 -9.41 -0.03 -2.47 16 18 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 19 C -0.13 -2.50 9.30 71.98 0.67 -1.83 16 20 C 0.04 1.41 4.62 86.77 0.40 1.81 16 21 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 22 H 0.06 1.58 6.21 -2.39 -0.01 1.56 16 23 H 0.07 1.61 6.36 -2.39 -0.02 1.60 16 24 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 25 H 0.05 2.06 7.02 -2.38 -0.02 2.05 16 26 H 0.00 -0.06 7.51 -2.39 -0.02 -0.08 16 27 H -0.03 -1.59 8.01 -2.38 -0.02 -1.61 16 28 H 0.25 17.04 7.22 -92.71 -0.67 16.37 16 29 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.06 1.57 6.26 -2.38 -0.01 1.56 16 31 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.08 1.44 8.04 -2.39 -0.02 1.42 16 33 H 0.06 1.04 8.10 -2.38 -0.02 1.03 16 34 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.06 1.74 5.34 -2.38 -0.01 1.73 16 37 H 0.04 1.70 8.09 -2.39 -0.02 1.68 16 Total: -1.00 -69.86 284.78 2.96 -66.90 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: 1.10 Total: 8.99 kcal Atomic # 6 Polarization: -49.61 SS G_CDS: 3.45 Total: -46.16 kcal Atomic # 7 Polarization: -80.71 SS G_CDS: -3.65 Total: -84.36 kcal Atomic # 14 Polarization: 52.57 SS G_CDS: 2.05 Total: 54.63 kcal Total: -69.86 2.96 -66.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172490977.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.383 kcal (2) G-P(sol) polarization free energy of solvation -69.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds