Wall clock time and date at job start Sun Mar 29 2020 21:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08998 * 109.46841 * 2 1 4 4 C 1.52992 * 109.47092 * 120.00279 * 2 1 3 5 5 C 1.53006 * 109.47112 * 184.99736 * 4 2 1 6 6 C 1.50698 * 109.47164 * 179.97438 * 5 4 2 7 7 H 1.08002 * 120.00378 * 0.02562 * 6 5 4 8 8 C 1.37876 * 119.99769 * 179.97438 * 6 5 4 9 9 N 1.31512 * 119.99967 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99837 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47321 * 90.00493 * 10 8 6 12 12 H 1.48501 * 109.47176 * 210.00181 * 10 8 6 13 13 H 1.48503 * 109.47314 * 330.00539 * 10 8 6 14 14 N 1.46900 * 109.46621 * 240.00124 * 2 1 3 15 15 C 1.47439 * 111.00259 * 305.77577 * 14 2 1 16 16 C 1.54319 * 107.23282 * 123.26195 * 15 14 2 17 17 C 1.55430 * 103.04911 * 22.28304 * 16 15 14 18 18 H 1.09000 * 111.00078 * 82.38829 * 17 16 15 19 19 C 1.53004 * 111.10664 * 206.30133 * 17 16 15 20 20 C 1.47847 * 111.00142 * 66.61931 * 14 2 1 21 21 H 1.09006 * 109.46687 * 305.34944 * 1 2 3 22 22 H 1.08997 * 109.47117 * 65.35380 * 1 2 3 23 23 H 1.08998 * 109.46896 * 185.35400 * 1 2 3 24 24 H 1.08999 * 109.47816 * 304.99734 * 4 2 1 25 25 H 1.09007 * 109.47681 * 64.99785 * 4 2 1 26 26 H 1.09005 * 109.46818 * 299.99928 * 5 4 2 27 27 H 1.08998 * 109.46691 * 59.99684 * 5 4 2 28 28 H 0.97002 * 119.99612 * 180.02562 * 9 8 6 29 29 H 1.09002 * 109.89008 * 242.66291 * 15 14 2 30 30 H 1.08998 * 109.89280 * 3.69127 * 15 14 2 31 31 H 1.09001 * 110.70703 * 140.67192 * 16 15 14 32 32 H 1.09010 * 110.70581 * 263.72337 * 16 15 14 33 33 H 1.08992 * 109.46986 * 172.17012 * 19 17 16 34 34 H 1.09000 * 109.46530 * 292.17003 * 19 17 16 35 35 H 1.09002 * 109.46922 * 52.16719 * 19 17 16 36 36 H 1.09004 * 110.37386 * 332.46423 * 20 14 2 37 37 H 1.09000 * 110.36924 * 94.69066 * 20 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5649 -0.6134 1.3136 6 6 4.0672 -1.3233 2.5443 7 1 3.3688 -1.8038 3.2135 8 6 5.4185 -1.3603 2.8155 9 7 6.2691 -0.7756 2.0005 10 14 6.0412 -2.2409 4.3407 11 1 6.3209 -3.6618 4.0124 12 1 7.2878 -1.5879 4.8150 13 1 5.0101 -2.1729 5.4072 14 7 2.0196 -0.6925 -1.1995 15 6 1.4371 -2.0428 -1.3049 16 6 0.7249 -2.1281 -2.6712 17 6 1.4271 -1.0185 -3.5028 18 1 2.3666 -1.3795 -3.9213 19 6 0.5062 -0.4895 -4.6043 20 6 1.6798 0.0637 -2.4237 21 1 -0.3633 0.5946 0.8383 22 1 -0.3633 0.4285 -0.9340 23 1 -0.3633 -1.0232 0.0959 24 1 1.6055 -0.2619 2.1370 25 1 1.7517 -1.7716 1.2055 26 1 3.9995 -1.0729 0.4258 27 1 3.8533 0.4369 1.3572 28 1 7.2198 -0.8020 2.1911 29 1 2.2264 -2.7925 -1.2508 30 1 0.7198 -2.2011 -0.4996 31 1 0.8795 -3.1065 -3.1261 32 1 -0.3395 -1.9181 -2.5649 33 1 0.9677 0.3764 -5.0789 34 1 0.3453 -1.2692 -5.3488 35 1 -0.4503 -0.1989 -4.1698 36 1 0.7803 0.6586 -2.2648 37 1 2.5111 0.7049 -2.7166 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172490978.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:00 Heat of formation + Delta-G solvation = -16.861600 kcal Electronic energy + Delta-G solvation = -14566.047819 eV Core-core repulsion = 12342.429630 eV Total energy + Delta-G solvation = -2223.618189 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.34712 -35.07301 -32.84251 -30.74737 -29.49031 -28.54753 -25.71886 -24.72504 -22.22253 -20.90297 -20.05384 -18.61384 -16.23889 -16.03670 -15.50452 -14.41899 -13.82030 -13.79436 -13.18608 -13.12352 -12.72346 -12.49837 -12.31603 -11.92378 -11.72031 -11.41003 -11.16299 -10.90657 -10.84407 -10.66381 -10.56636 -10.41976 -10.34259 -10.01714 -9.55584 -9.16032 -8.84735 -8.19769 -7.67306 -5.85427 -3.86796 3.39032 3.44910 3.48243 4.40535 4.56369 4.70344 4.87309 5.05415 5.35866 5.43554 5.49837 5.54050 5.59082 5.61551 5.69266 5.75417 5.85015 5.89612 5.99608 6.08538 6.16684 6.27362 6.30158 6.37367 6.50003 6.53522 6.71414 6.94195 7.33890 7.52998 7.67680 7.88219 8.11245 8.26474 8.60525 9.22365 9.75678 11.25653 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.049130 B = 0.006620 C = 0.006382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.774647 B = 4228.496334 C = 4386.223998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.075 3.925 3 H 0.076 0.924 4 C -0.101 4.101 5 C 0.029 3.971 6 C -0.518 4.518 7 H 0.050 0.950 8 C 0.056 3.944 9 N -0.894 5.894 10 Si 0.887 3.113 11 H -0.282 1.282 12 H -0.288 1.288 13 H -0.275 1.275 14 N -0.509 5.509 15 C 0.040 3.960 16 C -0.137 4.137 17 C -0.103 4.103 18 H 0.082 0.918 19 C -0.139 4.139 20 C 0.042 3.958 21 H 0.056 0.944 22 H 0.048 0.952 23 H 0.055 0.945 24 H 0.047 0.953 25 H 0.047 0.953 26 H 0.032 0.968 27 H 0.009 0.991 28 H 0.258 0.742 29 H 0.075 0.925 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.055 0.945 34 H 0.053 0.947 35 H 0.051 0.949 36 H 0.045 0.955 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.004 0.193 -10.205 15.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.034 4.034 3 H 0.094 0.906 4 C -0.139 4.139 5 C -0.008 4.008 6 C -0.557 4.557 7 H 0.069 0.931 8 C -0.144 4.144 9 N -0.534 5.534 10 Si 0.715 3.285 11 H -0.208 1.208 12 H -0.213 1.213 13 H -0.200 1.200 14 N -0.232 5.232 15 C -0.088 4.088 16 C -0.175 4.175 17 C -0.122 4.122 18 H 0.101 0.899 19 C -0.197 4.197 20 C -0.086 4.086 21 H 0.076 0.924 22 H 0.067 0.933 23 H 0.074 0.926 24 H 0.066 0.934 25 H 0.065 0.935 26 H 0.050 0.950 27 H 0.027 0.973 28 H 0.068 0.932 29 H 0.093 0.907 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -11.265 0.198 -10.155 15.168 hybrid contribution -0.437 -0.400 0.835 1.024 sum -11.702 -0.203 -9.319 14.961 Atomic orbital electron populations 1.22544 0.98987 1.01690 1.01143 1.21992 0.90963 0.98692 0.91708 0.90607 1.21697 1.00799 0.98213 0.93155 1.19000 0.88132 0.96672 0.96975 1.21347 0.91852 1.34035 1.08460 0.93149 1.24998 0.97135 0.95784 0.96499 1.69986 1.02140 1.44326 1.36969 0.86685 0.78275 0.79825 0.83716 1.20804 1.21346 1.20048 1.63727 1.56551 1.01610 1.01305 1.22837 0.97783 0.92472 0.95697 1.22916 0.99135 0.98994 0.96465 1.22336 0.99038 0.95721 0.95119 0.89937 1.21701 0.99102 1.00782 0.98114 1.23132 0.99539 0.96083 0.89810 0.92446 0.93306 0.92578 0.93434 0.93463 0.95010 0.97292 0.93246 0.90659 0.92180 0.91355 0.92030 0.92583 0.92756 0.92959 0.93720 0.90732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.68 8.58 37.16 0.32 -2.36 16 2 C 0.07 1.34 2.28 -67.71 -0.15 1.19 16 3 H 0.08 1.41 8.12 -51.93 -0.42 0.99 16 4 C -0.10 -2.16 4.54 -26.73 -0.12 -2.28 16 5 C 0.03 0.79 4.86 -27.88 -0.14 0.65 16 6 C -0.52 -15.24 9.11 -34.44 -0.31 -15.55 16 7 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 8 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 9 N -0.89 -27.87 13.29 55.43 0.74 -27.13 16 10 Si 0.89 22.30 29.54 -169.99 -5.02 17.28 16 11 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 13 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 14 N -0.51 -8.91 4.61 -223.29 -1.03 -9.94 16 15 C 0.04 0.63 5.56 -2.84 -0.02 0.61 16 16 C -0.14 -1.70 6.42 -24.75 -0.16 -1.86 16 17 C -0.10 -1.27 3.65 -88.32 -0.32 -1.59 16 18 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 19 C -0.14 -1.36 9.31 37.16 0.35 -1.02 16 20 C 0.04 0.61 5.94 -2.30 -0.01 0.59 16 21 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 22 H 0.05 0.64 6.20 -51.93 -0.32 0.32 16 23 H 0.06 0.80 6.22 -51.93 -0.32 0.47 16 24 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 25 H 0.05 1.00 6.75 -51.92 -0.35 0.65 16 26 H 0.03 0.92 7.75 -51.93 -0.40 0.52 16 27 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 29 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 30 H 0.06 0.94 4.81 -51.93 -0.25 0.69 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.71 8.01 -51.92 -0.42 0.30 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.05 0.50 8.09 -51.93 -0.42 0.08 16 36 H 0.04 0.60 5.82 -51.93 -0.30 0.30 16 37 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 285.57 15.07 4.30 4.30 Total: -1.00 -30.95 285.57 -8.23 -39.18 By element: Atomic # 1 Polarization: 2.89 SS G_CDS: -6.55 Total: -3.66 kcal Atomic # 6 Polarization: -19.37 SS G_CDS: -0.67 Total: -20.03 kcal Atomic # 7 Polarization: -36.77 SS G_CDS: -0.29 Total: -37.07 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -30.95 -8.23 -39.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172490978.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.319 kcal (2) G-P(sol) polarization free energy of solvation -30.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds