Wall clock time and date at job start Sun Mar 29 2020 21:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08998 * 109.46841 * 2 1 4 4 C 1.52992 * 109.47092 * 120.00279 * 2 1 3 5 5 C 1.53006 * 109.47112 * 184.99736 * 4 2 1 6 6 C 1.50698 * 109.47164 * 179.97438 * 5 4 2 7 7 H 1.08002 * 120.00378 * 0.02562 * 6 5 4 8 8 C 1.37876 * 119.99769 * 179.97438 * 6 5 4 9 9 N 1.31512 * 119.99967 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99837 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47321 * 90.00493 * 10 8 6 12 12 H 1.48501 * 109.47176 * 210.00181 * 10 8 6 13 13 H 1.48503 * 109.47314 * 330.00539 * 10 8 6 14 14 N 1.46900 * 109.46621 * 240.00124 * 2 1 3 15 15 C 1.47439 * 111.00259 * 305.77577 * 14 2 1 16 16 C 1.54319 * 107.23282 * 123.26195 * 15 14 2 17 17 C 1.55430 * 103.04911 * 22.28304 * 16 15 14 18 18 H 1.09000 * 111.00078 * 82.38829 * 17 16 15 19 19 C 1.53004 * 111.10664 * 206.30133 * 17 16 15 20 20 C 1.47847 * 111.00142 * 66.61931 * 14 2 1 21 21 H 1.09006 * 109.46687 * 305.34944 * 1 2 3 22 22 H 1.08997 * 109.47117 * 65.35380 * 1 2 3 23 23 H 1.08998 * 109.46896 * 185.35400 * 1 2 3 24 24 H 1.08999 * 109.47816 * 304.99734 * 4 2 1 25 25 H 1.09007 * 109.47681 * 64.99785 * 4 2 1 26 26 H 1.09005 * 109.46818 * 299.99928 * 5 4 2 27 27 H 1.08998 * 109.46691 * 59.99684 * 5 4 2 28 28 H 0.97002 * 119.99612 * 180.02562 * 9 8 6 29 29 H 1.09002 * 109.89008 * 242.66291 * 15 14 2 30 30 H 1.08998 * 109.89280 * 3.69127 * 15 14 2 31 31 H 1.09001 * 110.70703 * 140.67192 * 16 15 14 32 32 H 1.09010 * 110.70581 * 263.72337 * 16 15 14 33 33 H 1.08992 * 109.46986 * 172.17012 * 19 17 16 34 34 H 1.09000 * 109.46530 * 292.17003 * 19 17 16 35 35 H 1.09002 * 109.46922 * 52.16719 * 19 17 16 36 36 H 1.09004 * 110.37386 * 332.46423 * 20 14 2 37 37 H 1.09000 * 110.36924 * 94.69066 * 20 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5649 -0.6134 1.3136 6 6 4.0672 -1.3233 2.5443 7 1 3.3688 -1.8038 3.2135 8 6 5.4185 -1.3603 2.8155 9 7 6.2691 -0.7756 2.0005 10 14 6.0412 -2.2409 4.3407 11 1 6.3209 -3.6618 4.0124 12 1 7.2878 -1.5879 4.8150 13 1 5.0101 -2.1729 5.4072 14 7 2.0196 -0.6925 -1.1995 15 6 1.4371 -2.0428 -1.3049 16 6 0.7249 -2.1281 -2.6712 17 6 1.4271 -1.0185 -3.5028 18 1 2.3666 -1.3795 -3.9213 19 6 0.5062 -0.4895 -4.6043 20 6 1.6798 0.0637 -2.4237 21 1 -0.3633 0.5946 0.8383 22 1 -0.3633 0.4285 -0.9340 23 1 -0.3633 -1.0232 0.0959 24 1 1.6055 -0.2619 2.1370 25 1 1.7517 -1.7716 1.2055 26 1 3.9995 -1.0729 0.4258 27 1 3.8533 0.4369 1.3572 28 1 7.2198 -0.8020 2.1911 29 1 2.2264 -2.7925 -1.2508 30 1 0.7198 -2.2011 -0.4996 31 1 0.8795 -3.1065 -3.1261 32 1 -0.3395 -1.9181 -2.5649 33 1 0.9677 0.3764 -5.0789 34 1 0.3453 -1.2692 -5.3488 35 1 -0.4503 -0.1989 -4.1698 36 1 0.7803 0.6586 -2.2648 37 1 2.5111 0.7049 -2.7166 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172490978.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:00 Heat of formation + Delta-G solvation = -35.934688 kcal Electronic energy + Delta-G solvation = -14566.874890 eV Core-core repulsion = 12342.429630 eV Total energy + Delta-G solvation = -2224.445260 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.58941 -36.54588 -34.86109 -32.29432 -30.89285 -29.86649 -27.21833 -26.23826 -23.65218 -22.71930 -21.10819 -20.06810 -18.35625 -17.43121 -16.70885 -16.49146 -15.16909 -15.00904 -14.64269 -14.36186 -14.07978 -14.02463 -13.54373 -13.29527 -13.25098 -12.90117 -12.83325 -12.50000 -12.36223 -12.05628 -11.90773 -11.78373 -11.54440 -11.46836 -11.28601 -11.20311 -10.91075 -10.49782 -8.96801 -8.14531 -6.25784 1.39212 1.41394 1.52221 2.43136 3.16281 3.18217 3.67486 3.81095 4.02062 4.09369 4.26976 4.41417 4.46325 4.52688 4.63017 4.71792 4.72568 4.87302 4.89314 4.93478 4.96912 5.05941 5.09500 5.16846 5.24840 5.32679 5.33044 5.45672 5.51437 5.57919 5.86976 5.99966 6.26489 6.34015 6.37871 6.93923 7.42588 8.97113 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.049130 B = 0.006620 C = 0.006382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.774647 B = 4228.496334 C = 4386.223998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.080 3.920 3 H 0.062 0.938 4 C -0.089 4.089 5 C 0.039 3.961 6 C -0.543 4.543 7 H 0.056 0.944 8 C -0.002 4.002 9 N -0.934 5.934 10 Si 0.964 3.036 11 H -0.273 1.273 12 H -0.282 1.282 13 H -0.263 1.263 14 N -0.543 5.543 15 C 0.038 3.962 16 C -0.125 4.125 17 C -0.099 4.099 18 H 0.071 0.929 19 C -0.132 4.132 20 C 0.041 3.959 21 H 0.066 0.934 22 H 0.067 0.933 23 H 0.061 0.939 24 H 0.051 0.949 25 H 0.047 0.953 26 H 0.000 1.000 27 H -0.023 1.023 28 H 0.262 0.738 29 H 0.049 0.951 30 H 0.061 0.939 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.060 0.940 34 H 0.067 0.933 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.719 -0.399 -10.279 17.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.029 4.029 3 H 0.080 0.920 4 C -0.127 4.127 5 C 0.002 3.998 6 C -0.582 4.582 7 H 0.074 0.926 8 C -0.199 4.199 9 N -0.575 5.575 10 Si 0.788 3.212 11 H -0.198 1.198 12 H -0.207 1.207 13 H -0.187 1.187 14 N -0.267 5.267 15 C -0.090 4.090 16 C -0.164 4.164 17 C -0.118 4.118 18 H 0.089 0.911 19 C -0.190 4.190 20 C -0.086 4.086 21 H 0.085 0.915 22 H 0.086 0.914 23 H 0.080 0.920 24 H 0.070 0.930 25 H 0.066 0.934 26 H 0.019 0.981 27 H -0.004 1.004 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -12.999 -0.395 -10.236 16.550 hybrid contribution 0.160 -0.196 0.842 0.879 sum -12.839 -0.590 -9.394 15.920 Atomic orbital electron populations 1.22392 0.95638 1.02469 1.02572 1.21781 0.93510 0.97211 0.90388 0.92010 1.21510 0.96736 0.98909 0.95553 1.18813 0.92023 0.93951 0.95015 1.21793 0.92573 1.34447 1.09338 0.92600 1.25985 0.97358 0.96467 1.00110 1.70135 1.02596 1.45594 1.39133 0.85477 0.77828 0.78565 0.79331 1.19824 1.20706 1.18719 1.63573 1.58109 1.02789 1.02254 1.22802 0.97193 0.90938 0.98049 1.22860 0.99588 0.99739 0.94182 1.22316 0.99328 0.94894 0.95233 0.91066 1.21652 0.98671 1.01317 0.97355 1.23171 0.99636 0.96543 0.89260 0.91544 0.91421 0.91973 0.93017 0.93391 0.98149 1.00443 0.92978 0.93299 0.92032 0.90109 0.90215 0.92104 0.91406 0.92104 0.92234 0.92005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.61 8.58 71.99 0.62 -3.99 16 2 C 0.08 2.85 2.28 44.92 0.10 2.95 16 3 H 0.06 2.35 8.12 -2.39 -0.02 2.33 16 4 C -0.09 -3.89 4.54 30.59 0.14 -3.75 16 5 C 0.04 2.20 4.86 29.85 0.15 2.35 16 6 C -0.54 -32.59 9.11 25.60 0.23 -32.36 16 7 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 8 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 9 N -0.93 -59.65 13.29 21.45 0.28 -59.37 16 10 Si 0.96 45.99 29.54 68.60 2.03 48.02 16 11 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 12 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 13 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 14 N -0.54 -19.21 4.61 -860.37 -3.97 -23.18 16 15 C 0.04 1.17 5.56 86.65 0.48 1.66 16 16 C -0.13 -2.85 6.42 31.88 0.20 -2.64 16 17 C -0.10 -2.26 3.65 -9.31 -0.03 -2.29 16 18 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 19 C -0.13 -2.20 9.31 71.98 0.67 -1.53 16 20 C 0.04 1.16 5.94 86.77 0.52 1.67 16 21 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 22 H 0.07 1.57 6.20 -2.39 -0.01 1.56 16 23 H 0.06 1.60 6.22 -2.39 -0.01 1.59 16 24 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 25 H 0.05 2.06 6.75 -2.38 -0.02 2.04 16 26 H 0.00 0.00 7.75 -2.38 -0.02 -0.01 16 27 H -0.02 -1.41 8.14 -2.39 -0.02 -1.43 16 28 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 29 H 0.05 1.73 8.14 -2.39 -0.02 1.72 16 30 H 0.06 1.86 4.81 -2.39 -0.01 1.85 16 31 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.08 1.56 8.01 -2.38 -0.02 1.54 16 33 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.06 0.93 8.09 -2.39 -0.02 0.91 16 36 H 0.06 1.48 5.82 -2.38 -0.01 1.47 16 37 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -67.96 285.57 2.89 -65.08 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: 1.01 Total: 7.04 kcal Atomic # 6 Polarization: -41.12 SS G_CDS: 3.54 Total: -37.58 kcal Atomic # 7 Polarization: -78.86 SS G_CDS: -3.68 Total: -82.54 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Total: -67.96 2.89 -65.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172490978.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.140 kcal (2) G-P(sol) polarization free energy of solvation -67.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds