Wall clock time and date at job start Sun Mar 29 2020 21:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.46645 * 2 1 4 4 C 1.52999 * 109.47056 * 119.99577 * 2 1 3 5 5 C 1.52996 * 109.47096 * 185.00116 * 4 2 1 6 6 C 1.50696 * 109.47316 * 180.02562 * 5 4 2 7 7 H 1.07995 * 119.99888 * 359.97438 * 6 5 4 8 8 C 1.37879 * 120.00264 * 179.72621 * 6 5 4 9 9 N 1.31516 * 119.99616 * 0.27098 * 8 6 5 10 10 Si 1.86800 * 120.00212 * 180.27381 * 8 6 5 11 11 H 1.48498 * 109.46873 * 59.99845 * 10 8 6 12 12 H 1.48504 * 109.46984 * 180.02562 * 10 8 6 13 13 H 1.48504 * 109.46954 * 299.99931 * 10 8 6 14 14 N 1.46897 * 109.47006 * 239.99964 * 2 1 3 15 15 C 1.48531 * 111.00069 * 310.91672 * 14 2 1 16 16 C 1.54945 * 103.22448 * 159.72125 * 15 14 2 17 17 C 1.54597 * 102.92201 * 322.58654 * 16 15 14 18 18 H 1.09000 * 110.39206 * 262.99629 * 17 16 15 19 19 C 1.53001 * 110.30463 * 140.87131 * 17 16 15 20 20 C 1.47906 * 111.00207 * 68.31623 * 14 2 1 21 21 H 1.09001 * 109.47186 * 67.55161 * 1 2 3 22 22 H 1.09002 * 109.47413 * 187.55382 * 1 2 3 23 23 H 1.09003 * 109.47356 * 307.55148 * 1 2 3 24 24 H 1.09003 * 109.46847 * 65.00457 * 4 2 1 25 25 H 1.08997 * 109.47333 * 305.00729 * 4 2 1 26 26 H 1.09003 * 109.46994 * 60.00431 * 5 4 2 27 27 H 1.09006 * 109.46967 * 300.00390 * 5 4 2 28 28 H 0.96999 * 120.00087 * 179.97438 * 9 8 6 29 29 H 1.08999 * 110.66583 * 278.15854 * 15 14 2 30 30 H 1.09001 * 110.66706 * 41.29227 * 15 14 2 31 31 H 1.08994 * 110.71906 * 204.22694 * 16 15 14 32 32 H 1.08995 * 110.71937 * 80.94653 * 16 15 14 33 33 H 1.08993 * 109.47579 * 304.28039 * 19 17 16 34 34 H 1.09005 * 109.46916 * 64.28898 * 19 17 16 35 35 H 1.09002 * 109.46565 * 184.27946 * 19 17 16 36 36 H 1.09008 * 109.91325 * 333.50824 * 20 14 2 37 37 H 1.08998 * 109.91748 * 94.79771 * 20 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3138 6 6 4.0672 -1.3240 2.5439 7 1 3.3687 -1.8043 3.2130 8 6 5.4189 -1.3655 2.8124 9 7 6.2694 -0.7801 1.9978 10 14 6.0423 -2.2532 4.3332 11 1 5.6451 -3.6827 4.2696 12 1 7.5227 -2.1524 4.3933 13 1 5.4546 -1.6296 5.5461 14 7 2.0196 -0.6925 -1.1994 15 6 1.3408 -2.0022 -1.3723 16 6 1.5597 -2.3196 -2.8730 17 6 1.4294 -0.9322 -3.5424 18 1 0.4213 -0.7917 -3.9322 19 6 2.4575 -0.7862 -4.6660 20 6 1.7153 0.0838 -2.4211 21 1 -0.3633 0.3924 -0.9498 22 1 -0.3634 -1.0187 0.1351 23 1 -0.3634 0.6263 0.8147 24 1 1.7517 -1.7715 1.2056 25 1 1.6053 -0.2617 2.1370 26 1 3.8531 0.4371 1.3574 27 1 3.9994 -1.0727 0.4260 28 1 7.2204 -0.8090 2.1868 29 1 1.8071 -2.7628 -0.7461 30 1 0.2774 -1.9169 -1.1483 31 1 0.7901 -2.9987 -3.2398 32 1 2.5534 -2.7358 -3.0381 33 1 3.4569 -0.9654 -4.2697 34 1 2.2426 -1.5108 -5.4515 35 1 2.4052 0.2219 -5.0775 36 1 0.8384 0.7096 -2.2545 37 1 2.5709 0.7030 -2.6903 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172490979.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:01 Heat of formation + Delta-G solvation = -16.283645 kcal Electronic energy + Delta-G solvation = -14567.736092 eV Core-core repulsion = 12344.142966 eV Total energy + Delta-G solvation = -2223.593127 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.28206 -35.15363 -32.87084 -30.70265 -29.47468 -28.45609 -25.65846 -24.74818 -22.35190 -20.86766 -19.83062 -18.85106 -16.22682 -15.86884 -15.18392 -14.44372 -14.15109 -13.76786 -13.42647 -12.93335 -12.70946 -12.53626 -12.10400 -11.80749 -11.63261 -11.32130 -11.19223 -10.93157 -10.76517 -10.63935 -10.55367 -10.43510 -10.29946 -10.04611 -9.57178 -9.15328 -8.85828 -8.20076 -7.74875 -5.85151 -3.86575 3.40385 3.44469 3.47015 4.44150 4.56427 4.78914 4.92748 5.00971 5.36984 5.49864 5.53132 5.57670 5.62898 5.65383 5.70628 5.71452 5.85711 6.00245 6.11733 6.16560 6.17433 6.31467 6.32485 6.35420 6.49145 6.52079 6.71934 6.90975 7.33983 7.44781 7.64156 7.88046 8.11413 8.26800 8.60661 9.22378 9.75747 11.25847 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.038611 B = 0.007140 C = 0.006614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.007929 B = 3920.636302 C = 4232.681318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.071 3.929 3 H 0.075 0.925 4 C -0.098 4.098 5 C 0.030 3.970 6 C -0.519 4.519 7 H 0.050 0.950 8 C 0.057 3.943 9 N -0.894 5.894 10 Si 0.887 3.113 11 H -0.278 1.278 12 H -0.288 1.288 13 H -0.279 1.279 14 N -0.495 5.495 15 C 0.029 3.971 16 C -0.120 4.120 17 C -0.102 4.102 18 H 0.066 0.934 19 C -0.140 4.140 20 C 0.034 3.966 21 H 0.048 0.952 22 H 0.057 0.943 23 H 0.057 0.943 24 H 0.046 0.954 25 H 0.047 0.953 26 H 0.008 0.992 27 H 0.032 0.968 28 H 0.258 0.742 29 H 0.083 0.917 30 H 0.047 0.953 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.062 0.938 34 H 0.050 0.950 35 H 0.051 0.949 36 H 0.040 0.960 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.929 -0.014 -10.294 15.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.038 4.038 3 H 0.094 0.906 4 C -0.136 4.136 5 C -0.007 4.007 6 C -0.558 4.558 7 H 0.068 0.932 8 C -0.144 4.144 9 N -0.534 5.534 10 Si 0.715 3.285 11 H -0.204 1.204 12 H -0.214 1.214 13 H -0.204 1.204 14 N -0.218 5.218 15 C -0.099 4.099 16 C -0.158 4.158 17 C -0.121 4.121 18 H 0.085 0.915 19 C -0.198 4.198 20 C -0.094 4.094 21 H 0.067 0.933 22 H 0.076 0.924 23 H 0.076 0.924 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.027 0.973 27 H 0.050 0.950 28 H 0.068 0.932 29 H 0.102 0.898 30 H 0.065 0.935 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.058 0.942 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -10.163 -0.031 -10.239 14.426 hybrid contribution -0.488 -0.292 0.816 0.995 sum -10.651 -0.323 -9.423 14.225 Atomic orbital electron populations 1.22514 0.98956 1.01792 1.01102 1.21994 0.91076 0.98708 0.91972 0.90645 1.21642 1.00736 0.98208 0.93028 1.18993 0.88146 0.96630 0.96974 1.21310 0.91815 1.34123 1.08537 0.93200 1.24998 0.97126 0.95800 0.96475 1.69974 1.02172 1.44290 1.36957 0.86746 0.77584 0.80306 0.83831 1.20396 1.21388 1.20426 1.64964 1.53467 1.02370 1.00979 1.23316 0.97249 0.93281 0.96055 1.22579 1.02075 0.96033 0.95079 1.21964 0.98876 0.95603 0.95670 0.91530 1.21821 0.99480 1.00987 0.97507 1.22996 0.99823 0.96126 0.90429 0.93345 0.92370 0.92401 0.93519 0.93475 0.97336 0.94987 0.93195 0.89822 0.93542 0.91838 0.90639 0.91882 0.93087 0.92983 0.94163 0.90587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.68 8.18 37.16 0.30 -2.38 16 2 C 0.07 1.27 2.27 -67.71 -0.15 1.12 16 3 H 0.08 1.40 8.10 -51.93 -0.42 0.98 16 4 C -0.10 -2.11 4.63 -26.73 -0.12 -2.23 16 5 C 0.03 0.80 4.86 -27.89 -0.14 0.66 16 6 C -0.52 -15.27 9.11 -34.44 -0.31 -15.58 16 7 H 0.05 1.42 7.74 -52.49 -0.41 1.02 16 8 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 9 N -0.89 -27.82 13.29 55.43 0.74 -27.09 16 10 Si 0.89 22.31 29.54 -169.99 -5.02 17.28 16 11 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 12 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 13 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 14 N -0.49 -8.66 4.69 -222.49 -1.04 -9.70 16 15 C 0.03 0.44 5.56 -1.89 -0.01 0.43 16 16 C -0.12 -1.56 6.61 -24.86 -0.16 -1.73 16 17 C -0.10 -1.26 3.59 -89.26 -0.32 -1.58 16 18 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 19 C -0.14 -1.57 8.90 37.16 0.33 -1.24 16 20 C 0.03 0.50 6.10 -2.75 -0.02 0.48 16 21 H 0.05 0.64 6.28 -51.93 -0.33 0.31 16 22 H 0.06 0.82 6.40 -51.93 -0.33 0.49 16 23 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.05 0.99 7.09 -51.93 -0.37 0.62 16 25 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 27 H 0.03 0.93 7.75 -51.93 -0.40 0.53 16 28 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 29 H 0.08 1.43 7.65 -51.93 -0.40 1.03 16 30 H 0.05 0.66 5.46 -51.93 -0.28 0.38 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 1.05 7.84 -51.93 -0.41 0.64 16 33 H 0.06 0.79 8.11 -51.93 -0.42 0.37 16 34 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.04 0.55 6.01 -51.92 -0.31 0.24 16 37 H 0.08 1.15 7.68 -51.93 -0.40 0.75 16 LS Contribution 285.53 15.07 4.30 4.30 Total: -1.00 -30.88 285.53 -8.30 -39.18 By element: Atomic # 1 Polarization: 3.04 SS G_CDS: -6.57 Total: -3.53 kcal Atomic # 6 Polarization: -19.75 SS G_CDS: -0.70 Total: -20.45 kcal Atomic # 7 Polarization: -36.48 SS G_CDS: -0.31 Total: -36.79 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -30.88 -8.30 -39.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172490979.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.897 kcal (2) G-P(sol) polarization free energy of solvation -30.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds