Wall clock time and date at job start Sun Mar 29 2020 21:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.46645 * 2 1 4 4 C 1.52999 * 109.47056 * 119.99577 * 2 1 3 5 5 C 1.52996 * 109.47096 * 185.00116 * 4 2 1 6 6 C 1.50696 * 109.47316 * 180.02562 * 5 4 2 7 7 H 1.07995 * 119.99888 * 359.97438 * 6 5 4 8 8 C 1.37879 * 120.00264 * 179.72621 * 6 5 4 9 9 N 1.31516 * 119.99616 * 0.27098 * 8 6 5 10 10 Si 1.86800 * 120.00212 * 180.27381 * 8 6 5 11 11 H 1.48498 * 109.46873 * 59.99845 * 10 8 6 12 12 H 1.48504 * 109.46984 * 180.02562 * 10 8 6 13 13 H 1.48504 * 109.46954 * 299.99931 * 10 8 6 14 14 N 1.46897 * 109.47006 * 239.99964 * 2 1 3 15 15 C 1.48531 * 111.00069 * 310.91672 * 14 2 1 16 16 C 1.54945 * 103.22448 * 159.72125 * 15 14 2 17 17 C 1.54597 * 102.92201 * 322.58654 * 16 15 14 18 18 H 1.09000 * 110.39206 * 262.99629 * 17 16 15 19 19 C 1.53001 * 110.30463 * 140.87131 * 17 16 15 20 20 C 1.47906 * 111.00207 * 68.31623 * 14 2 1 21 21 H 1.09001 * 109.47186 * 67.55161 * 1 2 3 22 22 H 1.09002 * 109.47413 * 187.55382 * 1 2 3 23 23 H 1.09003 * 109.47356 * 307.55148 * 1 2 3 24 24 H 1.09003 * 109.46847 * 65.00457 * 4 2 1 25 25 H 1.08997 * 109.47333 * 305.00729 * 4 2 1 26 26 H 1.09003 * 109.46994 * 60.00431 * 5 4 2 27 27 H 1.09006 * 109.46967 * 300.00390 * 5 4 2 28 28 H 0.96999 * 120.00087 * 179.97438 * 9 8 6 29 29 H 1.08999 * 110.66583 * 278.15854 * 15 14 2 30 30 H 1.09001 * 110.66706 * 41.29227 * 15 14 2 31 31 H 1.08994 * 110.71906 * 204.22694 * 16 15 14 32 32 H 1.08995 * 110.71937 * 80.94653 * 16 15 14 33 33 H 1.08993 * 109.47579 * 304.28039 * 19 17 16 34 34 H 1.09005 * 109.46916 * 64.28898 * 19 17 16 35 35 H 1.09002 * 109.46565 * 184.27946 * 19 17 16 36 36 H 1.09008 * 109.91325 * 333.50824 * 20 14 2 37 37 H 1.08998 * 109.91748 * 94.79771 * 20 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3138 6 6 4.0672 -1.3240 2.5439 7 1 3.3687 -1.8043 3.2130 8 6 5.4189 -1.3655 2.8124 9 7 6.2694 -0.7801 1.9978 10 14 6.0423 -2.2532 4.3332 11 1 5.6451 -3.6827 4.2696 12 1 7.5227 -2.1524 4.3933 13 1 5.4546 -1.6296 5.5461 14 7 2.0196 -0.6925 -1.1994 15 6 1.3408 -2.0022 -1.3723 16 6 1.5597 -2.3196 -2.8730 17 6 1.4294 -0.9322 -3.5424 18 1 0.4213 -0.7917 -3.9322 19 6 2.4575 -0.7862 -4.6660 20 6 1.7153 0.0838 -2.4211 21 1 -0.3633 0.3924 -0.9498 22 1 -0.3634 -1.0187 0.1351 23 1 -0.3634 0.6263 0.8147 24 1 1.7517 -1.7715 1.2056 25 1 1.6053 -0.2617 2.1370 26 1 3.8531 0.4371 1.3574 27 1 3.9994 -1.0727 0.4260 28 1 7.2204 -0.8090 2.1868 29 1 1.8071 -2.7628 -0.7461 30 1 0.2774 -1.9169 -1.1483 31 1 0.7901 -2.9987 -3.2398 32 1 2.5534 -2.7358 -3.0381 33 1 3.4569 -0.9654 -4.2697 34 1 2.2426 -1.5108 -5.4515 35 1 2.4052 0.2219 -5.0775 36 1 0.8384 0.7096 -2.2545 37 1 2.5709 0.7030 -2.6903 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172490979.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:01 Heat of formation + Delta-G solvation = -35.352860 kcal Electronic energy + Delta-G solvation = -14568.562995 eV Core-core repulsion = 12344.142966 eV Total energy + Delta-G solvation = -2224.420030 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.51987 -36.61832 -34.90621 -32.32468 -30.84937 -29.77697 -27.22431 -26.23697 -23.79613 -22.69266 -20.89900 -20.28864 -18.38338 -17.23239 -16.53245 -16.44520 -15.38524 -14.93206 -14.65414 -14.49421 -14.36056 -13.96344 -13.54201 -13.18504 -13.04872 -12.88867 -12.80964 -12.49757 -12.34634 -12.14998 -11.86585 -11.67995 -11.56513 -11.40352 -11.32726 -11.23093 -10.92471 -10.49487 -9.03218 -8.14171 -6.25506 1.39016 1.42915 1.50668 2.43217 3.17365 3.20273 3.71473 3.82612 4.00046 4.07959 4.27669 4.42328 4.45453 4.57824 4.65306 4.66593 4.72274 4.85225 4.91439 4.96253 4.99284 5.08094 5.14712 5.17326 5.22262 5.28363 5.32078 5.46411 5.51002 5.57626 5.87242 6.00240 6.20615 6.33235 6.34691 6.93957 7.42674 8.97143 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.038611 B = 0.007140 C = 0.006614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.007929 B = 3920.636302 C = 4232.681318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.075 3.925 3 H 0.061 0.939 4 C -0.087 4.087 5 C 0.040 3.960 6 C -0.545 4.545 7 H 0.056 0.944 8 C -0.002 4.002 9 N -0.933 5.933 10 Si 0.963 3.037 11 H -0.267 1.267 12 H -0.283 1.283 13 H -0.267 1.267 14 N -0.530 5.530 15 C 0.028 3.972 16 C -0.115 4.115 17 C -0.095 4.095 18 H 0.092 0.908 19 C -0.138 4.138 20 C 0.033 3.967 21 H 0.067 0.933 22 H 0.063 0.937 23 H 0.066 0.934 24 H 0.046 0.954 25 H 0.051 0.949 26 H -0.023 1.023 27 H 0.000 1.000 28 H 0.261 0.739 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.091 0.909 32 H 0.059 0.941 33 H 0.039 0.961 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.054 0.946 37 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.623 -0.640 -10.473 16.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.034 4.034 3 H 0.079 0.921 4 C -0.125 4.125 5 C 0.003 3.997 6 C -0.583 4.583 7 H 0.074 0.926 8 C -0.199 4.199 9 N -0.574 5.574 10 Si 0.788 3.212 11 H -0.192 1.192 12 H -0.208 1.208 13 H -0.191 1.191 14 N -0.254 5.254 15 C -0.100 4.100 16 C -0.153 4.153 17 C -0.114 4.114 18 H 0.110 0.890 19 C -0.195 4.195 20 C -0.094 4.094 21 H 0.086 0.914 22 H 0.082 0.918 23 H 0.085 0.915 24 H 0.065 0.935 25 H 0.069 0.931 26 H -0.005 1.005 27 H 0.018 0.982 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.109 0.891 32 H 0.078 0.922 33 H 0.059 0.941 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.874 -0.657 -10.424 15.814 hybrid contribution 0.082 -0.075 0.851 0.858 sum -11.792 -0.733 -9.572 15.206 Atomic orbital electron populations 1.22363 0.95611 1.02549 1.02579 1.21789 0.93627 0.97224 0.90721 0.92087 1.21448 0.96683 0.98875 0.95449 1.18799 0.92027 0.93893 0.94991 1.21768 0.92553 1.34551 1.09435 0.92610 1.25988 0.97352 0.96507 1.00072 1.70127 1.02579 1.45546 1.39098 0.85538 0.77028 0.79225 0.79452 1.19243 1.20796 1.19140 1.64837 1.55044 1.03691 1.01870 1.23317 0.97694 0.91633 0.97339 1.22569 1.02155 0.97110 0.93486 1.21974 1.00456 0.94029 0.94951 0.88974 1.21794 0.97932 1.02223 0.97588 1.23034 0.99801 0.96565 0.90029 0.91418 0.91779 0.91486 0.93492 0.93077 1.00494 0.98157 0.92987 0.92515 0.91714 0.89070 0.92237 0.94149 0.91289 0.91929 0.92736 0.92048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.60 8.18 71.98 0.59 -4.01 16 2 C 0.08 2.69 2.27 44.92 0.10 2.79 16 3 H 0.06 2.32 8.10 -2.38 -0.02 2.30 16 4 C -0.09 -3.78 4.63 30.59 0.14 -3.64 16 5 C 0.04 2.26 4.86 29.85 0.15 2.40 16 6 C -0.55 -32.72 9.11 25.60 0.23 -32.49 16 7 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 8 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 9 N -0.93 -59.57 13.29 21.45 0.28 -59.29 16 10 Si 0.96 46.00 29.54 68.60 2.03 48.02 16 11 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 12 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 13 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 14 N -0.53 -18.67 4.69 -857.84 -4.03 -22.70 16 15 C 0.03 0.83 5.56 86.65 0.48 1.31 16 16 C -0.12 -2.83 6.61 31.80 0.21 -2.62 16 17 C -0.10 -2.13 3.59 -9.92 -0.04 -2.17 16 18 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 19 C -0.14 -2.87 8.90 71.98 0.64 -2.23 16 20 C 0.03 0.94 6.10 86.44 0.53 1.47 16 21 H 0.07 1.56 6.28 -2.39 -0.01 1.55 16 22 H 0.06 1.64 6.40 -2.39 -0.02 1.63 16 23 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 24 H 0.05 2.02 7.09 -2.39 -0.02 2.00 16 25 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 26 H -0.02 -1.44 8.14 -2.39 -0.02 -1.46 16 27 H 0.00 0.00 7.75 -2.38 -0.02 -0.02 16 28 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 29 H 0.06 1.98 7.65 -2.39 -0.02 1.96 16 30 H 0.06 1.70 5.46 -2.39 -0.01 1.69 16 31 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.06 1.64 7.84 -2.39 -0.02 1.62 16 33 H 0.04 1.01 8.11 -2.39 -0.02 0.99 16 34 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 35 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.05 1.36 6.01 -2.38 -0.01 1.35 16 37 H 0.06 1.87 7.68 -2.39 -0.02 1.85 16 Total: -1.00 -68.03 285.53 2.79 -65.24 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: 1.00 Total: 7.55 kcal Atomic # 6 Polarization: -42.33 SS G_CDS: 3.50 Total: -38.83 kcal Atomic # 7 Polarization: -78.24 SS G_CDS: -3.74 Total: -81.98 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.02 kcal Total: -68.03 2.79 -65.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172490979.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.891 kcal (2) G-P(sol) polarization free energy of solvation -68.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds