Wall clock time and date at job start Sun Mar 29 2020 21:37:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.47159 * 2 1 4 4 C 1.52999 * 109.47150 * 240.00117 * 2 1 3 5 5 C 1.53002 * 109.47219 * 175.00199 * 4 2 1 6 6 C 1.50694 * 109.47072 * 180.02562 * 5 4 2 7 7 H 1.07997 * 120.00129 * 359.97438 * 6 5 4 8 8 C 1.37882 * 119.99922 * 180.02562 * 6 5 4 9 9 N 1.31512 * 119.99903 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00050 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.47072 * 89.99582 * 10 8 6 12 12 H 1.48500 * 109.47335 * 209.99555 * 10 8 6 13 13 H 1.48495 * 109.47266 * 329.99965 * 10 8 6 14 14 N 1.46900 * 109.47255 * 119.99965 * 2 1 3 15 15 C 1.48561 * 111.00086 * 50.58327 * 14 2 1 16 16 C 1.54382 * 104.59492 * 200.96396 * 15 14 2 17 17 C 1.54262 * 105.06133 * 23.85274 * 16 15 14 18 18 C 1.48721 * 111.01317 * 295.07798 * 14 2 1 19 19 H 1.08997 * 110.39615 * 40.24139 * 18 14 2 20 20 C 1.53008 * 110.50926 * 277.74709 * 18 14 2 21 21 H 1.09003 * 109.47102 * 172.73317 * 1 2 3 22 22 H 1.09005 * 109.47083 * 292.73228 * 1 2 3 23 23 H 1.08997 * 109.47083 * 52.73033 * 1 2 3 24 24 H 1.09005 * 109.47100 * 294.99694 * 4 2 1 25 25 H 1.08993 * 109.47139 * 54.99741 * 4 2 1 26 26 H 1.09005 * 109.46672 * 299.99757 * 5 4 2 27 27 H 1.09004 * 109.47155 * 59.99370 * 5 4 2 28 28 H 0.97003 * 120.00226 * 180.02562 * 9 8 6 29 29 H 1.08997 * 110.41184 * 82.18407 * 15 14 2 30 30 H 1.09003 * 110.51055 * 319.79372 * 15 14 2 31 31 H 1.09001 * 110.31875 * 264.95854 * 16 15 14 32 32 H 1.08997 * 110.32327 * 142.75274 * 16 15 14 33 33 H 1.09000 * 110.31968 * 118.89873 * 17 16 15 34 34 H 1.09003 * 110.32026 * 241.00451 * 17 16 15 35 35 H 1.08997 * 109.47010 * 303.41849 * 20 18 14 36 36 H 1.09003 * 109.46925 * 63.41411 * 20 18 14 37 37 H 1.08995 * 109.47080 * 183.41152 * 20 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5648 -0.6133 -1.3137 6 6 4.0671 -1.3231 -2.5444 7 1 3.3686 -1.8036 -3.2135 8 6 5.4184 -1.3601 -2.8158 9 7 6.2690 -0.7755 -2.0007 10 14 6.0411 -2.2406 -4.3410 11 1 6.0914 -1.2862 -5.4776 12 1 7.4022 -2.7753 -4.0829 13 1 5.1245 -3.3602 -4.6751 14 7 2.0197 -0.6925 1.1994 15 6 1.3669 -2.0182 1.3527 16 6 1.5401 -2.3667 2.8466 17 6 1.7205 -1.0092 3.5567 18 6 1.6427 0.0470 2.4334 19 1 0.6284 0.4368 2.3478 20 6 2.6316 1.1837 2.7005 21 1 -0.3633 -1.0194 -0.1300 22 1 -0.3633 0.3971 0.9479 23 1 -0.3633 0.6223 -0.8178 24 1 1.7517 -1.7715 -1.2056 25 1 1.6054 -0.2617 -2.1369 26 1 3.8532 0.4370 -1.3573 27 1 3.9994 -1.0728 -0.4259 28 1 7.2197 -0.8012 -2.1917 29 1 1.8639 -2.7610 0.7288 30 1 0.3091 -1.9548 1.0972 31 1 2.4232 -2.9893 2.9901 32 1 0.6522 -2.8754 3.2221 33 1 0.9211 -0.8516 4.2807 34 1 2.6914 -0.9662 4.0502 35 1 3.6414 0.7787 2.7662 36 1 2.5824 1.9068 1.8863 37 1 2.3753 1.6752 3.6390 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172491656.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:16 Heat of formation + Delta-G solvation = -14.555028 kcal Electronic energy + Delta-G solvation = -14727.206007 eV Core-core repulsion = 12503.687839 eV Total energy + Delta-G solvation = -2223.518168 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.30524 -34.73912 -32.67205 -31.09725 -29.81804 -28.21285 -25.30067 -25.07602 -22.20399 -20.95013 -19.82561 -18.62171 -16.27417 -15.95456 -14.98440 -14.45046 -14.23801 -13.83006 -13.37448 -12.75319 -12.66449 -12.59070 -11.91586 -11.77774 -11.44885 -11.25161 -11.16623 -11.00185 -10.87105 -10.73944 -10.47209 -10.40892 -10.20691 -9.97195 -9.56940 -9.16239 -8.85038 -8.20860 -7.80228 -5.85667 -3.86980 3.38561 3.44560 3.48005 4.37729 4.56076 4.86058 4.99707 5.18246 5.31664 5.49432 5.52728 5.60486 5.65855 5.70257 5.77013 5.85255 5.93379 5.97029 6.14103 6.18206 6.24776 6.34976 6.37807 6.43241 6.47944 6.63168 6.73206 6.91230 7.33556 7.43042 7.64801 7.87994 8.11012 8.26326 8.60357 9.22141 9.75407 11.25279 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.038432 B = 0.007469 C = 0.007268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.380323 B = 3747.726444 C = 3851.527731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.070 3.930 3 H 0.077 0.923 4 C -0.099 4.099 5 C 0.030 3.970 6 C -0.519 4.519 7 H 0.050 0.950 8 C 0.056 3.944 9 N -0.894 5.894 10 Si 0.887 3.113 11 H -0.282 1.282 12 H -0.287 1.287 13 H -0.275 1.275 14 N -0.484 5.484 15 C 0.026 3.974 16 C -0.124 4.124 17 C -0.118 4.118 18 C 0.050 3.950 19 H 0.049 0.951 20 C -0.135 4.135 21 H 0.057 0.943 22 H 0.049 0.951 23 H 0.057 0.943 24 H 0.046 0.954 25 H 0.046 0.954 26 H 0.008 0.992 27 H 0.032 0.968 28 H 0.258 0.742 29 H 0.083 0.917 30 H 0.046 0.954 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.053 0.947 37 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.793 0.668 9.655 14.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.039 4.039 3 H 0.095 0.905 4 C -0.137 4.137 5 C -0.007 4.007 6 C -0.557 4.557 7 H 0.068 0.932 8 C -0.144 4.144 9 N -0.533 5.533 10 Si 0.715 3.285 11 H -0.208 1.208 12 H -0.213 1.213 13 H -0.200 1.200 14 N -0.207 5.207 15 C -0.102 4.102 16 C -0.162 4.162 17 C -0.157 4.157 18 C -0.058 4.058 19 H 0.067 0.933 20 C -0.192 4.192 21 H 0.076 0.924 22 H 0.068 0.932 23 H 0.076 0.924 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.027 0.973 27 H 0.050 0.950 28 H 0.067 0.933 29 H 0.101 0.899 30 H 0.064 0.936 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.073 0.927 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.013 0.658 9.608 13.893 hybrid contribution -0.480 -0.358 -0.877 1.062 sum -10.493 0.300 8.731 13.654 Atomic orbital electron populations 1.22528 0.99050 1.01781 1.01168 1.21983 0.91052 0.98905 0.91959 0.90506 1.21655 1.00767 0.98191 0.93076 1.18988 0.88106 0.96632 0.96948 1.21350 0.91848 1.34095 1.08448 0.93161 1.24998 0.97136 0.95813 0.96472 1.69983 1.02137 1.44407 1.36806 0.86689 0.78123 0.79988 0.83725 1.20843 1.21330 1.20047 1.65618 1.52785 1.01689 1.00644 1.23166 0.97608 0.93252 0.96123 1.22278 1.01434 0.97211 0.95296 1.22328 1.01722 0.94532 0.97078 1.22724 0.97290 0.94764 0.91026 0.93322 1.21685 1.00026 0.97249 1.00285 0.92395 0.93224 0.92397 0.93539 0.93491 0.97335 0.95004 0.93261 0.89860 0.93641 0.91172 0.92133 0.92211 0.91125 0.91528 0.92746 0.93107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.71 8.26 37.16 0.31 -2.40 16 2 C 0.07 1.24 2.31 -67.71 -0.16 1.09 16 3 H 0.08 1.43 7.34 -51.93 -0.38 1.05 16 4 C -0.10 -2.12 4.62 -26.73 -0.12 -2.24 16 5 C 0.03 0.81 4.86 -27.88 -0.14 0.68 16 6 C -0.52 -15.23 9.11 -34.44 -0.31 -15.55 16 7 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 8 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 9 N -0.89 -27.74 13.29 55.43 0.74 -27.01 16 10 Si 0.89 22.30 29.54 -169.99 -5.02 17.28 16 11 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 13 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 14 N -0.48 -8.41 4.50 -214.10 -0.96 -9.37 16 15 C 0.03 0.41 5.48 -2.18 -0.01 0.40 16 16 C -0.12 -1.63 7.00 -25.35 -0.18 -1.80 16 17 C -0.12 -1.50 6.55 -25.35 -0.17 -1.67 16 18 C 0.05 0.73 2.76 -65.98 -0.18 0.54 16 19 H 0.05 0.67 5.84 -51.93 -0.30 0.36 16 20 C -0.13 -1.90 9.32 37.16 0.35 -1.56 16 21 H 0.06 0.82 6.35 -51.93 -0.33 0.49 16 22 H 0.05 0.66 5.99 -51.93 -0.31 0.35 16 23 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 24 H 0.05 0.99 7.03 -51.93 -0.37 0.62 16 25 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 26 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 27 H 0.03 0.92 7.75 -51.93 -0.40 0.52 16 28 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 29 H 0.08 1.44 7.63 -51.93 -0.40 1.04 16 30 H 0.05 0.66 5.43 -51.93 -0.28 0.37 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.90 7.86 -51.93 -0.41 0.49 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.05 0.80 7.43 -51.93 -0.39 0.41 16 37 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 284.22 15.07 4.28 4.28 Total: -1.00 -30.84 284.22 -8.16 -39.00 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: -6.49 Total: -3.25 kcal Atomic # 6 Polarization: -20.23 SS G_CDS: -0.71 Total: -20.94 kcal Atomic # 7 Polarization: -36.15 SS G_CDS: -0.23 Total: -36.38 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -30.84 -8.16 -39.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172491656.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.444 kcal (2) G-P(sol) polarization free energy of solvation -30.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds