Wall clock time and date at job start Sun Mar 29 2020 21:37:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.47159 * 2 1 4 4 C 1.52999 * 109.47150 * 240.00117 * 2 1 3 5 5 C 1.53002 * 109.47219 * 175.00199 * 4 2 1 6 6 C 1.50694 * 109.47072 * 180.02562 * 5 4 2 7 7 H 1.07997 * 120.00129 * 359.97438 * 6 5 4 8 8 C 1.37882 * 119.99922 * 180.02562 * 6 5 4 9 9 N 1.31512 * 119.99903 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00050 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.47072 * 89.99582 * 10 8 6 12 12 H 1.48500 * 109.47335 * 209.99555 * 10 8 6 13 13 H 1.48495 * 109.47266 * 329.99965 * 10 8 6 14 14 N 1.46900 * 109.47255 * 119.99965 * 2 1 3 15 15 C 1.48561 * 111.00086 * 50.58327 * 14 2 1 16 16 C 1.54382 * 104.59492 * 200.96396 * 15 14 2 17 17 C 1.54262 * 105.06133 * 23.85274 * 16 15 14 18 18 C 1.48721 * 111.01317 * 295.07798 * 14 2 1 19 19 H 1.08997 * 110.39615 * 40.24139 * 18 14 2 20 20 C 1.53008 * 110.50926 * 277.74709 * 18 14 2 21 21 H 1.09003 * 109.47102 * 172.73317 * 1 2 3 22 22 H 1.09005 * 109.47083 * 292.73228 * 1 2 3 23 23 H 1.08997 * 109.47083 * 52.73033 * 1 2 3 24 24 H 1.09005 * 109.47100 * 294.99694 * 4 2 1 25 25 H 1.08993 * 109.47139 * 54.99741 * 4 2 1 26 26 H 1.09005 * 109.46672 * 299.99757 * 5 4 2 27 27 H 1.09004 * 109.47155 * 59.99370 * 5 4 2 28 28 H 0.97003 * 120.00226 * 180.02562 * 9 8 6 29 29 H 1.08997 * 110.41184 * 82.18407 * 15 14 2 30 30 H 1.09003 * 110.51055 * 319.79372 * 15 14 2 31 31 H 1.09001 * 110.31875 * 264.95854 * 16 15 14 32 32 H 1.08997 * 110.32327 * 142.75274 * 16 15 14 33 33 H 1.09000 * 110.31968 * 118.89873 * 17 16 15 34 34 H 1.09003 * 110.32026 * 241.00451 * 17 16 15 35 35 H 1.08997 * 109.47010 * 303.41849 * 20 18 14 36 36 H 1.09003 * 109.46925 * 63.41411 * 20 18 14 37 37 H 1.08995 * 109.47080 * 183.41152 * 20 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5648 -0.6133 -1.3137 6 6 4.0671 -1.3231 -2.5444 7 1 3.3686 -1.8036 -3.2135 8 6 5.4184 -1.3601 -2.8158 9 7 6.2690 -0.7755 -2.0007 10 14 6.0411 -2.2406 -4.3410 11 1 6.0914 -1.2862 -5.4776 12 1 7.4022 -2.7753 -4.0829 13 1 5.1245 -3.3602 -4.6751 14 7 2.0197 -0.6925 1.1994 15 6 1.3669 -2.0182 1.3527 16 6 1.5401 -2.3667 2.8466 17 6 1.7205 -1.0092 3.5567 18 6 1.6427 0.0470 2.4334 19 1 0.6284 0.4368 2.3478 20 6 2.6316 1.1837 2.7005 21 1 -0.3633 -1.0194 -0.1300 22 1 -0.3633 0.3971 0.9479 23 1 -0.3633 0.6223 -0.8178 24 1 1.7517 -1.7715 -1.2056 25 1 1.6054 -0.2617 -2.1369 26 1 3.8532 0.4370 -1.3573 27 1 3.9994 -1.0728 -0.4259 28 1 7.2197 -0.8012 -2.1917 29 1 1.8639 -2.7610 0.7288 30 1 0.3091 -1.9548 1.0972 31 1 2.4232 -2.9893 2.9901 32 1 0.6522 -2.8754 3.2221 33 1 0.9211 -0.8516 4.2807 34 1 2.6914 -0.9662 4.0502 35 1 3.6414 0.7787 2.7662 36 1 2.5824 1.9068 1.8863 37 1 2.3753 1.6752 3.6390 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172491656.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:16 Heat of formation + Delta-G solvation = -33.564775 kcal Electronic energy + Delta-G solvation = -14728.030331 eV Core-core repulsion = 12503.687839 eV Total energy + Delta-G solvation = -2224.342493 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.55181 -36.34799 -34.68397 -32.23869 -31.67799 -29.48393 -27.08576 -26.41018 -23.75086 -22.62788 -21.06507 -19.99921 -18.38258 -17.38260 -16.52213 -16.19787 -15.47807 -15.15328 -14.72366 -14.44217 -14.26203 -13.93468 -13.46002 -13.23590 -13.00354 -12.82528 -12.62101 -12.44860 -12.34191 -12.22408 -12.01574 -11.74500 -11.59935 -11.40099 -11.23748 -11.18072 -10.89971 -10.50209 -9.07573 -8.14586 -6.25757 1.38529 1.40643 1.51500 2.42661 3.15685 3.17741 3.74268 3.83642 4.08934 4.14342 4.25267 4.41050 4.46182 4.54054 4.62367 4.70545 4.76649 4.84034 4.87968 4.98655 5.00570 5.07748 5.13569 5.18074 5.24166 5.31169 5.37028 5.41826 5.51369 5.57667 5.87697 6.00196 6.20200 6.33217 6.36659 6.93868 7.42385 8.96758 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.038432 B = 0.007469 C = 0.007268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.380323 B = 3747.726444 C = 3851.527731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.075 3.925 3 H 0.062 0.938 4 C -0.088 4.088 5 C 0.042 3.958 6 C -0.545 4.545 7 H 0.055 0.945 8 C -0.002 4.002 9 N -0.932 5.932 10 Si 0.963 3.037 11 H -0.272 1.272 12 H -0.282 1.282 13 H -0.264 1.264 14 N -0.519 5.519 15 C 0.024 3.976 16 C -0.120 4.120 17 C -0.114 4.114 18 C 0.049 3.951 19 H 0.065 0.935 20 C -0.133 4.133 21 H 0.063 0.937 22 H 0.068 0.932 23 H 0.065 0.935 24 H 0.046 0.954 25 H 0.049 0.951 26 H -0.024 1.024 27 H 0.000 1.000 28 H 0.261 0.739 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.064 0.936 35 H 0.041 0.959 36 H 0.040 0.960 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.457 0.172 9.929 15.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.034 4.034 3 H 0.080 0.920 4 C -0.126 4.126 5 C 0.005 3.995 6 C -0.583 4.583 7 H 0.073 0.927 8 C -0.199 4.199 9 N -0.572 5.572 10 Si 0.787 3.213 11 H -0.197 1.197 12 H -0.207 1.207 13 H -0.188 1.188 14 N -0.243 5.243 15 C -0.103 4.103 16 C -0.158 4.158 17 C -0.152 4.152 18 C -0.059 4.059 19 H 0.083 0.917 20 C -0.190 4.190 21 H 0.082 0.918 22 H 0.087 0.913 23 H 0.085 0.915 24 H 0.064 0.936 25 H 0.068 0.932 26 H -0.005 1.005 27 H 0.018 0.982 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.107 0.893 33 H 0.108 0.892 34 H 0.083 0.917 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -11.695 0.162 9.887 15.315 hybrid contribution 0.081 -0.180 -0.939 0.959 sum -11.614 -0.018 8.948 14.661 Atomic orbital electron populations 1.22383 0.95798 1.02502 1.02628 1.21758 0.93514 0.97419 0.90731 0.91964 1.21462 0.96758 0.98826 0.95511 1.18776 0.91930 0.93854 0.94923 1.21799 0.92565 1.34543 1.09365 0.92687 1.25979 0.97363 0.96503 1.00065 1.70131 1.02572 1.45610 1.38926 0.85491 0.77589 0.78952 0.79260 1.19723 1.20720 1.18848 1.65532 1.54272 1.02936 1.01576 1.23169 0.97927 0.91739 0.97490 1.22274 1.02306 0.97638 0.93581 1.22333 1.02650 0.93361 0.96822 1.22828 0.97844 0.94997 0.90221 0.91697 1.21684 0.98853 0.97169 1.01341 0.91840 0.91277 0.91549 0.93563 0.93187 1.00520 0.98155 0.93003 0.92743 0.91952 0.92252 0.89306 0.89188 0.91676 0.93954 0.94080 0.90088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.67 8.26 71.98 0.59 -4.08 16 2 C 0.07 2.66 2.31 44.91 0.10 2.76 16 3 H 0.06 2.37 7.34 -2.38 -0.02 2.35 16 4 C -0.09 -3.83 4.62 30.59 0.14 -3.69 16 5 C 0.04 2.38 4.86 29.85 0.15 2.52 16 6 C -0.54 -32.71 9.11 25.60 0.23 -32.48 16 7 H 0.05 3.17 7.74 -2.91 -0.02 3.15 16 8 C 0.00 -0.10 5.46 84.66 0.46 0.36 16 9 N -0.93 -59.39 13.29 21.45 0.28 -59.11 16 10 Si 0.96 46.06 29.54 68.60 2.03 48.09 16 11 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 12 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 13 H -0.26 -12.08 7.11 99.48 0.71 -11.37 16 14 N -0.52 -18.04 4.50 -831.29 -3.74 -21.78 16 15 C 0.02 0.74 5.48 86.45 0.47 1.21 16 16 C -0.12 -2.92 7.00 31.49 0.22 -2.70 16 17 C -0.11 -2.60 6.55 31.49 0.21 -2.40 16 18 C 0.05 1.33 2.76 45.03 0.12 1.46 16 19 H 0.07 1.57 5.84 -2.39 -0.01 1.56 16 20 C -0.13 -3.69 9.32 71.98 0.67 -3.02 16 21 H 0.06 1.64 6.35 -2.39 -0.02 1.62 16 22 H 0.07 1.60 5.99 -2.38 -0.01 1.58 16 23 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 24 H 0.05 1.99 7.03 -2.38 -0.02 1.98 16 25 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 26 H -0.02 -1.45 8.14 -2.38 -0.02 -1.47 16 27 H 0.00 0.00 7.75 -2.38 -0.02 -0.02 16 28 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 29 H 0.05 1.93 7.63 -2.39 -0.02 1.91 16 30 H 0.06 1.66 5.43 -2.39 -0.01 1.65 16 31 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.06 1.56 7.86 -2.39 -0.02 1.54 16 35 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.04 1.22 7.43 -2.39 -0.02 1.20 16 37 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -68.05 284.22 2.95 -65.09 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: 1.01 Total: 7.75 kcal Atomic # 6 Polarization: -43.43 SS G_CDS: 3.38 Total: -40.05 kcal Atomic # 7 Polarization: -77.43 SS G_CDS: -3.46 Total: -80.88 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -68.05 2.95 -65.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172491656.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.527 kcal (2) G-P(sol) polarization free energy of solvation -68.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds