Wall clock time and date at job start Sun Mar 29 2020 21:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08990 * 109.46788 * 2 1 4 4 C 1.52999 * 109.46948 * 239.99733 * 2 1 3 5 5 C 1.53002 * 109.47002 * 174.99988 * 4 2 1 6 6 C 1.50700 * 109.47252 * 180.02562 * 5 4 2 7 7 H 1.08000 * 119.99607 * 359.97438 * 6 5 4 8 8 C 1.37871 * 119.99952 * 180.02562 * 6 5 4 9 9 N 1.31509 * 119.99924 * 179.97438 * 8 6 5 10 10 Si 1.86800 * 120.00276 * 359.97438 * 8 6 5 11 11 H 1.48508 * 109.47007 * 89.99844 * 10 8 6 12 12 H 1.48493 * 109.47355 * 209.99910 * 10 8 6 13 13 H 1.48498 * 109.46953 * 330.00326 * 10 8 6 14 14 N 1.46904 * 109.46791 * 119.99837 * 2 1 3 15 15 C 1.47847 * 111.00184 * 38.74623 * 14 2 1 16 16 C 1.54905 * 104.79458 * 213.63461 * 15 14 2 17 17 C 1.55144 * 101.65439 * 37.06478 * 16 15 14 18 18 C 1.47436 * 111.00081 * 277.89638 * 14 2 1 19 19 H 1.09005 * 109.88719 * 242.66469 * 18 14 2 20 20 C 1.52998 * 109.89066 * 3.69350 * 18 14 2 21 21 H 1.08995 * 109.47163 * 41.54990 * 1 2 3 22 22 H 1.09005 * 109.46882 * 161.54961 * 1 2 3 23 23 H 1.09004 * 109.47271 * 281.54369 * 1 2 3 24 24 H 1.09004 * 109.47601 * 294.99948 * 4 2 1 25 25 H 1.08996 * 109.47130 * 55.00262 * 4 2 1 26 26 H 1.09004 * 109.46911 * 300.00383 * 5 4 2 27 27 H 1.08996 * 109.46954 * 60.00166 * 5 4 2 28 28 H 0.97003 * 120.00644 * 180.02562 * 9 8 6 29 29 H 1.09000 * 110.37024 * 332.45499 * 15 14 2 30 30 H 1.08995 * 110.37509 * 94.79990 * 15 14 2 31 31 H 1.09006 * 110.98945 * 278.97467 * 16 15 14 32 32 H 1.09000 * 111.02741 * 155.17021 * 16 15 14 33 33 H 1.09004 * 110.70462 * 205.96679 * 17 16 15 34 34 H 1.09000 * 110.70416 * 82.73324 * 17 16 15 35 35 H 1.08998 * 109.47138 * 60.85372 * 20 18 14 36 36 H 1.08992 * 109.47301 * 180.85598 * 20 18 14 37 37 H 1.09003 * 109.46982 * 300.85127 * 20 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5649 -0.6134 -1.3137 6 6 4.0672 -1.3233 -2.5444 7 1 3.3687 -1.8038 -3.2135 8 6 5.4184 -1.3602 -2.8157 9 7 5.8568 -1.9802 -3.8895 10 14 6.6266 -0.5297 -1.6581 11 1 7.0613 -1.4974 -0.6188 12 1 7.8088 -0.0646 -2.4269 13 1 5.9700 0.6329 -1.0082 14 7 2.0197 -0.6925 1.1995 15 6 1.1813 -1.8698 1.5110 16 6 1.1841 -1.9594 3.0574 17 6 1.1549 -0.4609 3.4582 18 6 2.0175 0.2077 2.3672 19 1 3.0356 0.3447 2.7316 20 6 1.4168 1.5606 1.9804 21 1 -0.3633 0.7690 -0.6816 22 1 -0.3633 -0.9749 -0.3253 23 1 -0.3634 0.2057 1.0069 24 1 1.7517 -1.7716 -1.2056 25 1 1.6054 -0.2618 -2.1369 26 1 3.8532 0.4370 -1.3573 27 1 3.9994 -1.0728 -0.4260 28 1 6.8075 -2.0066 -4.0802 29 1 0.1667 -1.7215 1.1414 30 1 1.6161 -2.7705 1.0778 31 1 2.0919 -2.4426 3.4189 32 1 0.2969 -2.4781 3.4207 33 1 1.5992 -0.3167 4.4431 34 1 0.1357 -0.0753 3.4339 35 1 0.3881 1.4199 1.6487 36 1 1.4324 2.2253 2.8440 37 1 2.0020 2.0004 1.1728 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172491659.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:18 Heat of formation + Delta-G solvation = 5.676233 kcal Electronic energy + Delta-G solvation = -14885.414192 eV Core-core repulsion = 12662.773318 eV Total energy + Delta-G solvation = -2222.640875 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.86802 -34.72918 -32.62019 -31.41109 -30.14110 -28.60473 -25.70490 -24.84894 -22.22433 -20.82065 -20.25717 -18.36953 -16.54105 -16.05934 -15.80988 -14.55076 -14.10136 -13.92240 -13.51000 -12.93468 -12.67670 -12.40213 -12.37153 -11.96838 -11.74711 -11.59025 -11.23090 -11.10143 -10.89108 -10.75183 -10.63356 -10.37258 -10.03223 -9.79918 -9.50724 -9.34273 -8.96144 -8.39133 -7.79613 -5.90992 -3.86717 3.42752 3.48445 3.55566 4.26161 4.59174 4.72551 4.83021 4.94681 5.30161 5.35512 5.40119 5.44996 5.50297 5.56376 5.63368 5.69810 5.73997 5.83114 5.99029 6.00568 6.17390 6.21238 6.23567 6.28081 6.41979 6.47196 6.63218 6.77920 7.16853 7.43451 7.53321 7.59091 7.78933 7.98312 8.69878 9.15292 9.73521 11.22941 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.037314 B = 0.008430 C = 0.008053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.205139 B = 3320.753892 C = 3476.097649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.061 3.939 3 H 0.087 0.913 4 C -0.088 4.088 5 C -0.006 4.006 6 C -0.515 4.515 7 H 0.067 0.933 8 C 0.063 3.937 9 N -0.910 5.910 10 Si 0.882 3.118 11 H -0.278 1.278 12 H -0.292 1.292 13 H -0.265 1.265 14 N -0.510 5.510 15 C 0.031 3.969 16 C -0.130 4.130 17 C -0.136 4.136 18 C 0.067 3.933 19 H 0.080 0.920 20 C -0.181 4.181 21 H 0.055 0.945 22 H 0.058 0.942 23 H 0.055 0.945 24 H 0.050 0.950 25 H 0.051 0.949 26 H 0.007 0.993 27 H 0.026 0.974 28 H 0.260 0.740 29 H 0.057 0.943 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.051 0.949 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.983 4.553 14.280 18.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.047 4.047 3 H 0.105 0.895 4 C -0.126 4.126 5 C -0.043 4.043 6 C -0.554 4.554 7 H 0.085 0.915 8 C -0.137 4.137 9 N -0.550 5.550 10 Si 0.710 3.290 11 H -0.204 1.204 12 H -0.218 1.218 13 H -0.190 1.190 14 N -0.233 5.233 15 C -0.096 4.096 16 C -0.168 4.168 17 C -0.175 4.175 18 C -0.042 4.042 19 H 0.098 0.902 20 C -0.238 4.238 21 H 0.074 0.926 22 H 0.076 0.924 23 H 0.074 0.926 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.025 0.975 27 H 0.044 0.956 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.097 0.903 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.071 0.929 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.303 4.357 14.066 17.972 hybrid contribution -0.050 0.620 0.631 0.886 sum -10.353 4.977 14.697 18.653 Atomic orbital electron populations 1.22692 0.98509 1.01847 1.01011 1.22274 0.91577 0.99233 0.91611 0.89545 1.21456 0.98937 0.98871 0.93378 1.19462 0.91524 0.96138 0.97194 1.21272 0.92800 1.33796 1.07491 0.91452 1.25025 0.98454 0.95094 0.95115 1.69932 1.14366 1.44137 1.26604 0.86731 0.80504 0.80666 0.81083 1.20392 1.21832 1.18986 1.63802 1.50810 1.06361 1.02376 1.23239 0.96803 0.95027 0.94529 1.22694 1.01858 0.96089 0.96190 1.22865 0.99820 0.95868 0.98914 1.22414 0.99175 0.91766 0.90804 0.90157 1.22689 1.01998 0.97437 1.01677 0.92561 0.92354 0.92592 0.93077 0.92998 0.97513 0.95574 0.93011 0.92512 0.90289 0.90896 0.91436 0.91366 0.91815 0.91405 0.92949 0.91302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.45 6.95 37.16 0.26 -2.19 16 2 C 0.06 1.01 1.85 -67.71 -0.13 0.89 16 3 H 0.09 1.44 5.20 -51.93 -0.27 1.17 16 4 C -0.09 -1.82 4.64 -26.73 -0.12 -1.95 16 5 C -0.01 -0.15 3.93 -27.88 -0.11 -0.25 16 6 C -0.52 -15.37 9.66 -34.44 -0.33 -15.70 16 7 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 8 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 9 N -0.91 -29.14 13.96 55.43 0.77 -28.37 16 10 Si 0.88 22.93 27.47 -169.99 -4.67 18.26 16 11 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 12 H -0.29 -7.48 7.11 56.52 0.40 -7.07 16 13 H -0.27 -6.67 6.54 56.52 0.37 -6.30 16 14 N -0.51 -8.29 4.50 -215.45 -0.97 -9.26 16 15 C 0.03 0.45 5.95 -2.30 -0.01 0.43 16 16 C -0.13 -1.52 7.08 -24.59 -0.17 -1.70 16 17 C -0.14 -1.52 6.47 -24.91 -0.16 -1.68 16 18 C 0.07 0.91 3.81 -66.73 -0.25 0.65 16 19 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 20 C -0.18 -2.18 7.75 37.16 0.29 -1.89 16 21 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 22 H 0.06 0.79 6.88 -51.93 -0.36 0.43 16 23 H 0.06 0.68 5.40 -51.93 -0.28 0.40 16 24 H 0.05 1.07 7.84 -51.93 -0.41 0.67 16 25 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 26 H 0.01 0.17 7.20 -51.93 -0.37 -0.21 16 27 H 0.03 0.67 7.18 -51.93 -0.37 0.30 16 28 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 29 H 0.06 0.76 4.85 -51.93 -0.25 0.50 16 30 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.66 7.84 -51.93 -0.41 0.25 16 35 H 0.07 0.78 4.75 -51.93 -0.25 0.53 16 36 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.91 6.14 -51.93 -0.32 0.59 16 LS Contribution 274.97 15.07 4.14 4.14 Total: -1.00 -31.70 274.97 -7.82 -39.52 By element: Atomic # 1 Polarization: 3.53 SS G_CDS: -6.25 Total: -2.72 kcal Atomic # 6 Polarization: -20.72 SS G_CDS: -0.85 Total: -21.57 kcal Atomic # 7 Polarization: -37.43 SS G_CDS: -0.20 Total: -37.63 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -4.67 Total: 18.26 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -31.70 -7.82 -39.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172491659.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.194 kcal (2) G-P(sol) polarization free energy of solvation -31.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds