Wall clock time and date at job start Sun Mar 29 2020 21:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08990 * 109.46788 * 2 1 4 4 C 1.52999 * 109.46948 * 239.99733 * 2 1 3 5 5 C 1.53002 * 109.47002 * 174.99988 * 4 2 1 6 6 C 1.50700 * 109.47252 * 180.02562 * 5 4 2 7 7 H 1.08000 * 119.99607 * 359.97438 * 6 5 4 8 8 C 1.37871 * 119.99952 * 180.02562 * 6 5 4 9 9 N 1.31509 * 119.99924 * 179.97438 * 8 6 5 10 10 Si 1.86800 * 120.00276 * 359.97438 * 8 6 5 11 11 H 1.48508 * 109.47007 * 89.99844 * 10 8 6 12 12 H 1.48493 * 109.47355 * 209.99910 * 10 8 6 13 13 H 1.48498 * 109.46953 * 330.00326 * 10 8 6 14 14 N 1.46904 * 109.46791 * 119.99837 * 2 1 3 15 15 C 1.47847 * 111.00184 * 38.74623 * 14 2 1 16 16 C 1.54905 * 104.79458 * 213.63461 * 15 14 2 17 17 C 1.55144 * 101.65439 * 37.06478 * 16 15 14 18 18 C 1.47436 * 111.00081 * 277.89638 * 14 2 1 19 19 H 1.09005 * 109.88719 * 242.66469 * 18 14 2 20 20 C 1.52998 * 109.89066 * 3.69350 * 18 14 2 21 21 H 1.08995 * 109.47163 * 41.54990 * 1 2 3 22 22 H 1.09005 * 109.46882 * 161.54961 * 1 2 3 23 23 H 1.09004 * 109.47271 * 281.54369 * 1 2 3 24 24 H 1.09004 * 109.47601 * 294.99948 * 4 2 1 25 25 H 1.08996 * 109.47130 * 55.00262 * 4 2 1 26 26 H 1.09004 * 109.46911 * 300.00383 * 5 4 2 27 27 H 1.08996 * 109.46954 * 60.00166 * 5 4 2 28 28 H 0.97003 * 120.00644 * 180.02562 * 9 8 6 29 29 H 1.09000 * 110.37024 * 332.45499 * 15 14 2 30 30 H 1.08995 * 110.37509 * 94.79990 * 15 14 2 31 31 H 1.09006 * 110.98945 * 278.97467 * 16 15 14 32 32 H 1.09000 * 111.02741 * 155.17021 * 16 15 14 33 33 H 1.09004 * 110.70462 * 205.96679 * 17 16 15 34 34 H 1.09000 * 110.70416 * 82.73324 * 17 16 15 35 35 H 1.08998 * 109.47138 * 60.85372 * 20 18 14 36 36 H 1.08992 * 109.47301 * 180.85598 * 20 18 14 37 37 H 1.09003 * 109.46982 * 300.85127 * 20 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5649 -0.6134 -1.3137 6 6 4.0672 -1.3233 -2.5444 7 1 3.3687 -1.8038 -3.2135 8 6 5.4184 -1.3602 -2.8157 9 7 5.8568 -1.9802 -3.8895 10 14 6.6266 -0.5297 -1.6581 11 1 7.0613 -1.4974 -0.6188 12 1 7.8088 -0.0646 -2.4269 13 1 5.9700 0.6329 -1.0082 14 7 2.0197 -0.6925 1.1995 15 6 1.1813 -1.8698 1.5110 16 6 1.1841 -1.9594 3.0574 17 6 1.1549 -0.4609 3.4582 18 6 2.0175 0.2077 2.3672 19 1 3.0356 0.3447 2.7316 20 6 1.4168 1.5606 1.9804 21 1 -0.3633 0.7690 -0.6816 22 1 -0.3633 -0.9749 -0.3253 23 1 -0.3634 0.2057 1.0069 24 1 1.7517 -1.7716 -1.2056 25 1 1.6054 -0.2618 -2.1369 26 1 3.8532 0.4370 -1.3573 27 1 3.9994 -1.0728 -0.4260 28 1 6.8075 -2.0066 -4.0802 29 1 0.1667 -1.7215 1.1414 30 1 1.6161 -2.7705 1.0778 31 1 2.0919 -2.4426 3.4189 32 1 0.2969 -2.4781 3.4207 33 1 1.5992 -0.3167 4.4431 34 1 0.1357 -0.0753 3.4339 35 1 0.3881 1.4199 1.6487 36 1 1.4324 2.2253 2.8440 37 1 2.0020 2.0004 1.1728 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172491659.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:17 Heat of formation + Delta-G solvation = -14.804225 kcal Electronic energy + Delta-G solvation = -14886.302292 eV Core-core repulsion = 12662.773318 eV Total energy + Delta-G solvation = -2223.528974 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.98821 -36.27837 -34.61718 -32.54185 -31.85063 -29.74052 -27.35704 -26.06720 -23.53977 -22.44713 -21.50634 -19.70219 -18.73282 -17.20784 -16.90721 -16.33896 -15.61427 -15.06063 -14.73261 -14.60568 -14.48892 -13.80455 -13.62580 -13.33920 -12.97932 -12.92656 -12.64412 -12.54179 -12.16181 -11.88446 -11.81585 -11.71442 -11.64231 -11.38355 -11.32732 -11.12975 -10.90714 -10.73047 -8.96506 -8.27633 -6.29739 1.35503 1.37086 1.50734 2.38259 3.08396 3.14851 3.74171 3.84799 4.02014 4.09467 4.25803 4.39880 4.43023 4.57521 4.63588 4.69347 4.71503 4.81062 4.87218 4.93040 4.99008 5.03862 5.12687 5.17801 5.22923 5.26901 5.30898 5.44047 5.50959 5.59227 5.70103 5.76526 6.31698 6.34485 6.40053 6.78563 7.34679 8.89586 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.037314 B = 0.008430 C = 0.008053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.205139 B = 3320.753892 C = 3476.097649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.069 3.931 3 H 0.088 0.912 4 C -0.083 4.083 5 C 0.005 3.995 6 C -0.531 4.531 7 H 0.027 0.973 8 C 0.002 3.998 9 N -0.955 5.955 10 Si 0.954 3.046 11 H -0.270 1.270 12 H -0.283 1.283 13 H -0.250 1.250 14 N -0.541 5.541 15 C 0.027 3.973 16 C -0.125 4.125 17 C -0.126 4.126 18 C 0.061 3.939 19 H 0.067 0.933 20 C -0.175 4.175 21 H 0.066 0.934 22 H 0.054 0.946 23 H 0.076 0.924 24 H 0.037 0.963 25 H 0.047 0.953 26 H 0.007 0.993 27 H 0.021 0.979 28 H 0.265 0.735 29 H 0.068 0.932 30 H 0.053 0.947 31 H 0.064 0.936 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.804 5.992 16.839 21.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.040 4.040 3 H 0.106 0.894 4 C -0.121 4.121 5 C -0.033 4.033 6 C -0.569 4.569 7 H 0.046 0.954 8 C -0.194 4.194 9 N -0.596 5.596 10 Si 0.778 3.222 11 H -0.195 1.195 12 H -0.209 1.209 13 H -0.174 1.174 14 N -0.265 5.265 15 C -0.100 4.100 16 C -0.163 4.163 17 C -0.164 4.164 18 C -0.047 4.047 19 H 0.085 0.915 20 C -0.233 4.233 21 H 0.085 0.915 22 H 0.073 0.927 23 H 0.095 0.905 24 H 0.056 0.944 25 H 0.066 0.934 26 H 0.026 0.974 27 H 0.039 0.961 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.108 0.892 33 H 0.102 0.898 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.144 5.798 16.634 20.844 hybrid contribution 0.198 0.098 -0.249 0.333 sum -10.946 5.896 16.384 20.568 Atomic orbital electron populations 1.22575 0.95824 1.02128 1.02586 1.22071 0.93667 0.98356 0.89863 0.89428 1.21347 0.95991 0.98836 0.95966 1.19325 0.94522 0.95049 0.94394 1.21650 0.92623 1.33952 1.08643 0.95437 1.26011 1.00663 0.95803 0.96917 1.70079 1.15149 1.45726 1.28681 0.85593 0.77825 0.80001 0.78775 1.19518 1.20860 1.17350 1.63632 1.52046 1.07580 1.03286 1.23253 0.96783 0.93447 0.96525 1.22675 1.02592 0.97005 0.94004 1.22822 1.00258 0.94735 0.98622 1.22469 0.99347 0.92331 0.90548 0.91469 1.22625 1.01898 0.96734 1.02016 0.91532 0.92667 0.90497 0.94369 0.93410 0.97440 0.96102 0.92631 0.91376 0.92815 0.91683 0.89176 0.89829 0.90229 0.90578 0.90959 0.92818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.23 6.95 71.98 0.50 -3.73 16 2 C 0.07 2.18 1.85 44.92 0.08 2.27 16 3 H 0.09 2.78 5.20 -2.39 -0.01 2.77 16 4 C -0.08 -3.47 4.64 30.59 0.14 -3.33 16 5 C 0.00 0.23 3.93 29.85 0.12 0.35 16 6 C -0.53 -32.63 9.66 25.60 0.25 -32.38 16 7 H 0.03 1.84 7.99 -2.91 -0.02 1.82 16 8 C 0.00 0.12 5.47 84.65 0.46 0.59 16 9 N -0.95 -62.61 13.96 21.44 0.30 -62.32 16 10 Si 0.95 47.44 27.47 68.60 1.88 49.32 16 11 H -0.27 -13.01 7.11 99.48 0.71 -12.30 16 12 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 13 H -0.25 -11.70 6.54 99.48 0.65 -11.05 16 14 N -0.54 -16.87 4.50 -835.54 -3.76 -20.64 16 15 C 0.03 0.74 5.95 86.77 0.52 1.26 16 16 C -0.12 -2.60 7.08 31.98 0.23 -2.37 16 17 C -0.13 -2.36 6.47 31.78 0.21 -2.15 16 18 C 0.06 1.50 3.81 45.26 0.17 1.68 16 19 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 20 C -0.18 -3.69 7.75 71.98 0.56 -3.13 16 21 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 22 H 0.05 1.39 6.88 -2.38 -0.02 1.37 16 23 H 0.08 1.58 5.40 -2.38 -0.01 1.57 16 24 H 0.04 1.65 7.84 -2.39 -0.02 1.63 16 25 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 26 H 0.01 0.37 7.20 -2.39 -0.02 0.35 16 27 H 0.02 1.07 7.18 -2.39 -0.02 1.05 16 28 H 0.26 16.15 8.31 -92.71 -0.77 15.38 16 29 H 0.07 1.68 4.85 -2.39 -0.01 1.67 16 30 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 32 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.08 1.27 7.84 -2.39 -0.02 1.25 16 35 H 0.08 1.46 4.75 -2.39 -0.01 1.45 16 36 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.05 1.30 6.14 -2.39 -0.01 1.28 16 Total: -1.00 -69.52 274.97 2.62 -66.90 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: 0.96 Total: 7.69 kcal Atomic # 6 Polarization: -44.19 SS G_CDS: 3.23 Total: -40.96 kcal Atomic # 7 Polarization: -79.49 SS G_CDS: -3.46 Total: -82.95 kcal Atomic # 14 Polarization: 47.44 SS G_CDS: 1.88 Total: 49.32 kcal Total: -69.52 2.62 -66.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172491659.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.096 kcal (2) G-P(sol) polarization free energy of solvation -69.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds