Wall clock time and date at job start Sun Mar 29 2020 21:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.46894 * 2 1 4 4 C 1.53001 * 109.47072 * 119.99977 * 2 1 3 5 5 C 1.52998 * 109.46936 * 185.00022 * 4 2 1 6 6 C 1.50700 * 109.46806 * 180.02562 * 5 4 2 7 7 H 1.08000 * 120.00101 * 359.97438 * 6 5 4 8 8 C 1.37880 * 120.00014 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99800 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00250 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46858 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.46957 * 119.99955 * 10 8 6 13 13 H 1.48492 * 109.47359 * 239.99838 * 10 8 6 14 14 N 1.46901 * 109.46715 * 239.99977 * 2 1 3 15 15 C 1.47438 * 111.00452 * 305.91730 * 14 2 1 16 16 C 1.54320 * 107.23578 * 123.25956 * 15 14 2 17 17 C 1.55137 * 103.01557 * 22.28602 * 16 15 14 18 18 C 1.47840 * 111.00263 * 66.76510 * 14 2 1 19 19 H 1.09005 * 110.37283 * 332.46200 * 18 14 2 20 20 C 1.52997 * 110.37403 * 94.80137 * 18 14 2 21 21 H 1.08998 * 109.46860 * 66.56204 * 1 2 3 22 22 H 1.09006 * 109.46676 * 186.55623 * 1 2 3 23 23 H 1.09000 * 109.47089 * 306.55700 * 1 2 3 24 24 H 1.09007 * 109.47039 * 64.99898 * 4 2 1 25 25 H 1.08994 * 109.47201 * 305.00121 * 4 2 1 26 26 H 1.08997 * 109.47343 * 60.00045 * 5 4 2 27 27 H 1.08998 * 109.46989 * 299.99628 * 5 4 2 28 28 H 0.96998 * 120.00345 * 180.02562 * 9 8 6 29 29 H 1.09004 * 109.89141 * 242.67199 * 15 14 2 30 30 H 1.09004 * 109.88583 * 3.85328 * 15 14 2 31 31 H 1.09000 * 110.70251 * 140.66790 * 16 15 14 32 32 H 1.08991 * 110.70522 * 263.72818 * 16 15 14 33 33 H 1.09004 * 110.99219 * 82.43704 * 17 16 15 34 34 H 1.08997 * 110.99282 * 206.21918 * 17 16 15 35 35 H 1.09006 * 109.47457 * 60.00318 * 20 18 14 36 36 H 1.09008 * 109.47227 * 180.02562 * 20 18 14 37 37 H 1.09002 * 109.47578 * 299.99734 * 20 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5649 -0.6133 1.3137 6 6 4.0672 -1.3242 2.5438 7 1 3.3687 -1.8046 3.2129 8 6 5.4185 -1.3605 2.8156 9 7 6.2690 -0.7750 2.0010 10 14 6.0411 -2.2411 4.3408 11 1 4.8912 -2.8135 5.0859 12 1 6.9637 -3.3335 3.9396 13 1 6.7636 -1.2769 5.2088 14 7 2.0196 -0.6925 -1.1995 15 6 1.4345 -2.0416 -1.3067 16 6 0.7237 -2.1244 -2.6739 17 6 1.4283 -1.0174 -3.5016 18 6 1.6829 0.0653 -2.4234 19 1 0.7844 0.6619 -2.2651 20 6 2.8531 0.9612 -2.8341 21 1 -0.3633 0.4088 -0.9429 22 1 -0.3633 -1.0210 0.1173 23 1 -0.3633 0.6121 0.8255 24 1 1.7517 -1.7716 1.2056 25 1 1.6054 -0.2618 2.1369 26 1 3.8532 0.4370 1.3573 27 1 3.9994 -1.0728 0.4260 28 1 7.2196 -0.8008 2.1920 29 1 2.2223 -2.7929 -1.2521 30 1 0.7138 -2.1980 -0.5040 31 1 0.8771 -3.1027 -3.1293 32 1 -0.3402 -1.9123 -2.5686 33 1 2.3672 -1.3804 -3.9197 34 1 0.7733 -0.6406 -4.2871 35 1 3.7315 0.3455 -3.0280 36 1 2.5892 1.5128 -3.7365 37 1 3.0723 1.6640 -2.0303 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172491660.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:19 Heat of formation + Delta-G solvation = -15.632725 kcal Electronic energy + Delta-G solvation = -14741.427364 eV Core-core repulsion = 12517.862464 eV Total energy + Delta-G solvation = -2223.564900 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.38332 -34.69758 -32.63541 -31.08521 -29.73226 -28.32383 -25.34073 -25.03630 -21.95585 -21.14776 -19.95187 -18.47214 -16.54333 -16.03969 -14.93755 -14.41502 -14.03213 -13.64737 -13.40858 -12.80442 -12.67870 -12.48462 -11.95631 -11.80986 -11.65525 -11.23636 -11.16037 -10.93821 -10.87243 -10.75384 -10.46247 -10.37529 -10.32567 -10.00296 -9.55377 -9.16143 -8.83240 -8.20033 -7.67735 -5.85578 -3.86771 3.37781 3.44968 3.49089 4.35506 4.56281 4.86300 4.89001 5.15755 5.36106 5.49643 5.53759 5.60519 5.63229 5.71713 5.74502 5.88266 5.90689 6.01730 6.14493 6.16249 6.19082 6.34473 6.38179 6.44676 6.51848 6.66177 6.73236 6.95193 7.34708 7.56817 7.70519 7.88605 8.11572 8.26718 8.60723 9.22586 9.75674 11.25399 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.040426 B = 0.007427 C = 0.007142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.464124 B = 3768.974096 C = 3919.698924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.076 3.924 3 H 0.075 0.925 4 C -0.101 4.101 5 C 0.030 3.970 6 C -0.518 4.518 7 H 0.051 0.949 8 C 0.056 3.944 9 N -0.894 5.894 10 Si 0.886 3.114 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.285 1.285 14 N -0.505 5.505 15 C 0.041 3.959 16 C -0.142 4.142 17 C -0.124 4.124 18 C 0.063 3.937 19 H 0.051 0.949 20 C -0.133 4.133 21 H 0.048 0.952 22 H 0.055 0.945 23 H 0.056 0.944 24 H 0.047 0.953 25 H 0.046 0.954 26 H 0.008 0.992 27 H 0.032 0.968 28 H 0.257 0.743 29 H 0.075 0.925 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.048 0.952 37 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.071 0.667 -9.614 14.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.033 4.033 3 H 0.094 0.906 4 C -0.138 4.138 5 C -0.007 4.007 6 C -0.556 4.556 7 H 0.069 0.931 8 C -0.144 4.144 9 N -0.533 5.533 10 Si 0.714 3.286 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.212 1.212 14 N -0.228 5.228 15 C -0.087 4.087 16 C -0.181 4.181 17 C -0.162 4.162 18 C -0.045 4.045 19 H 0.069 0.931 20 C -0.191 4.191 21 H 0.067 0.933 22 H 0.074 0.926 23 H 0.075 0.925 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.027 0.973 27 H 0.050 0.950 28 H 0.067 0.933 29 H 0.094 0.906 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.067 0.933 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.337 0.663 -9.571 14.104 hybrid contribution -0.457 -0.395 0.861 1.052 sum -10.795 0.268 -8.711 13.873 Atomic orbital electron populations 1.22549 0.99045 1.01690 1.01085 1.21984 0.90898 0.98687 0.91701 0.90650 1.21697 1.00809 0.98199 0.93146 1.18986 0.88110 0.96619 0.96955 1.21391 0.91853 1.33931 1.08465 0.93119 1.25001 0.97152 0.95810 0.96485 1.69993 1.02082 1.44396 1.36868 0.86637 0.78809 0.79540 0.83588 1.19913 1.21148 1.21169 1.63661 1.56660 1.01418 1.01088 1.22824 0.97735 0.92436 0.95686 1.22794 0.99135 0.99271 0.96859 1.22735 1.00618 0.95705 0.97103 1.22593 0.96933 0.94904 0.90111 0.93072 1.21674 0.98281 0.99122 1.00043 0.93344 0.92574 0.92479 0.93478 0.93491 0.97330 0.95007 0.93324 0.90643 0.92216 0.91304 0.92154 0.90695 0.91684 0.91877 0.93301 0.92477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.68 8.56 37.16 0.32 -2.36 16 2 C 0.08 1.35 2.28 -67.71 -0.15 1.20 16 3 H 0.08 1.40 8.12 -51.93 -0.42 0.98 16 4 C -0.10 -2.15 4.54 -26.73 -0.12 -2.27 16 5 C 0.03 0.81 4.86 -27.88 -0.14 0.68 16 6 C -0.52 -15.20 9.11 -34.44 -0.31 -15.51 16 7 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 8 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 9 N -0.89 -27.73 13.29 55.43 0.74 -26.99 16 10 Si 0.89 22.30 29.54 -169.99 -5.02 17.27 16 11 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 13 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 14 N -0.50 -8.73 4.26 -215.47 -0.92 -9.65 16 15 C 0.04 0.64 5.57 -2.84 -0.02 0.62 16 16 C -0.14 -1.76 6.94 -24.91 -0.17 -1.93 16 17 C -0.12 -1.52 6.49 -24.59 -0.16 -1.68 16 18 C 0.06 0.90 2.80 -66.19 -0.19 0.72 16 19 H 0.05 0.71 5.93 -51.93 -0.31 0.40 16 20 C -0.13 -1.90 9.59 37.16 0.36 -1.55 16 21 H 0.05 0.64 6.19 -51.93 -0.32 0.32 16 22 H 0.06 0.80 6.25 -51.93 -0.32 0.47 16 23 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 24 H 0.05 1.00 6.77 -51.93 -0.35 0.65 16 25 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 27 H 0.03 0.92 7.75 -51.93 -0.40 0.52 16 28 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 29 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 30 H 0.06 0.93 4.83 -51.93 -0.25 0.68 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.95 8.05 -51.93 -0.42 0.53 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.97 8.13 -51.93 -0.42 0.55 16 36 H 0.05 0.57 8.14 -51.92 -0.42 0.15 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 285.94 15.07 4.31 4.31 Total: -1.00 -30.79 285.94 -8.14 -38.93 By element: Atomic # 1 Polarization: 3.22 SS G_CDS: -6.57 Total: -3.34 kcal Atomic # 6 Polarization: -19.85 SS G_CDS: -0.68 Total: -20.53 kcal Atomic # 7 Polarization: -36.46 SS G_CDS: -0.18 Total: -36.64 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -30.79 -8.14 -38.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172491660.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.301 kcal (2) G-P(sol) polarization free energy of solvation -30.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds