Wall clock time and date at job start Sun Mar 29 2020 21:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.46894 * 2 1 4 4 C 1.53001 * 109.47072 * 119.99977 * 2 1 3 5 5 C 1.52998 * 109.46936 * 185.00022 * 4 2 1 6 6 C 1.50700 * 109.46806 * 180.02562 * 5 4 2 7 7 H 1.08000 * 120.00101 * 359.97438 * 6 5 4 8 8 C 1.37880 * 120.00014 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99800 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00250 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46858 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.46957 * 119.99955 * 10 8 6 13 13 H 1.48492 * 109.47359 * 239.99838 * 10 8 6 14 14 N 1.46901 * 109.46715 * 239.99977 * 2 1 3 15 15 C 1.47438 * 111.00452 * 305.91730 * 14 2 1 16 16 C 1.54320 * 107.23578 * 123.25956 * 15 14 2 17 17 C 1.55137 * 103.01557 * 22.28602 * 16 15 14 18 18 C 1.47840 * 111.00263 * 66.76510 * 14 2 1 19 19 H 1.09005 * 110.37283 * 332.46200 * 18 14 2 20 20 C 1.52997 * 110.37403 * 94.80137 * 18 14 2 21 21 H 1.08998 * 109.46860 * 66.56204 * 1 2 3 22 22 H 1.09006 * 109.46676 * 186.55623 * 1 2 3 23 23 H 1.09000 * 109.47089 * 306.55700 * 1 2 3 24 24 H 1.09007 * 109.47039 * 64.99898 * 4 2 1 25 25 H 1.08994 * 109.47201 * 305.00121 * 4 2 1 26 26 H 1.08997 * 109.47343 * 60.00045 * 5 4 2 27 27 H 1.08998 * 109.46989 * 299.99628 * 5 4 2 28 28 H 0.96998 * 120.00345 * 180.02562 * 9 8 6 29 29 H 1.09004 * 109.89141 * 242.67199 * 15 14 2 30 30 H 1.09004 * 109.88583 * 3.85328 * 15 14 2 31 31 H 1.09000 * 110.70251 * 140.66790 * 16 15 14 32 32 H 1.08991 * 110.70522 * 263.72818 * 16 15 14 33 33 H 1.09004 * 110.99219 * 82.43704 * 17 16 15 34 34 H 1.08997 * 110.99282 * 206.21918 * 17 16 15 35 35 H 1.09006 * 109.47457 * 60.00318 * 20 18 14 36 36 H 1.09008 * 109.47227 * 180.02562 * 20 18 14 37 37 H 1.09002 * 109.47578 * 299.99734 * 20 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5649 -0.6133 1.3137 6 6 4.0672 -1.3242 2.5438 7 1 3.3687 -1.8046 3.2129 8 6 5.4185 -1.3605 2.8156 9 7 6.2690 -0.7750 2.0010 10 14 6.0411 -2.2411 4.3408 11 1 4.8912 -2.8135 5.0859 12 1 6.9637 -3.3335 3.9396 13 1 6.7636 -1.2769 5.2088 14 7 2.0196 -0.6925 -1.1995 15 6 1.4345 -2.0416 -1.3067 16 6 0.7237 -2.1244 -2.6739 17 6 1.4283 -1.0174 -3.5016 18 6 1.6829 0.0653 -2.4234 19 1 0.7844 0.6619 -2.2651 20 6 2.8531 0.9612 -2.8341 21 1 -0.3633 0.4088 -0.9429 22 1 -0.3633 -1.0210 0.1173 23 1 -0.3633 0.6121 0.8255 24 1 1.7517 -1.7716 1.2056 25 1 1.6054 -0.2618 2.1369 26 1 3.8532 0.4370 1.3573 27 1 3.9994 -1.0728 0.4260 28 1 7.2196 -0.8008 2.1920 29 1 2.2223 -2.7929 -1.2521 30 1 0.7138 -2.1980 -0.5040 31 1 0.8771 -3.1027 -3.1293 32 1 -0.3402 -1.9123 -2.5686 33 1 2.3672 -1.3804 -3.9197 34 1 0.7733 -0.6406 -4.2871 35 1 3.7315 0.3455 -3.0280 36 1 2.5892 1.5128 -3.7365 37 1 3.0723 1.6640 -2.0303 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172491660.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:19 Heat of formation + Delta-G solvation = -34.409188 kcal Electronic energy + Delta-G solvation = -14742.241573 eV Core-core repulsion = 12517.862464 eV Total energy + Delta-G solvation = -2224.379109 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.62637 -36.31804 -34.64488 -32.21669 -31.59634 -29.58138 -27.03419 -26.49201 -23.53303 -22.66086 -21.28153 -19.84758 -18.37985 -17.73143 -16.53131 -16.09040 -15.30252 -15.00888 -14.71060 -14.43893 -14.13610 -14.03515 -13.43858 -13.23343 -13.04949 -12.85596 -12.82662 -12.38838 -12.37461 -12.14811 -11.96938 -11.73842 -11.51904 -11.49378 -11.28347 -11.23027 -10.89028 -10.50134 -8.95314 -8.14520 -6.25577 1.38712 1.39534 1.52656 2.42737 3.13170 3.17565 3.77578 3.79210 4.10584 4.12442 4.28047 4.38508 4.47710 4.53256 4.61812 4.72537 4.82460 4.85324 4.93130 4.95408 4.99896 5.03547 5.13976 5.16675 5.23883 5.33264 5.39499 5.44524 5.51496 5.58773 5.88127 6.00731 6.30405 6.36557 6.43003 6.94302 7.42609 8.97010 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.040426 B = 0.007427 C = 0.007142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.464124 B = 3768.974096 C = 3919.698924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.081 3.919 3 H 0.060 0.940 4 C -0.089 4.089 5 C 0.042 3.958 6 C -0.543 4.543 7 H 0.055 0.945 8 C -0.002 4.002 9 N -0.932 5.932 10 Si 0.963 3.037 11 H -0.263 1.263 12 H -0.278 1.278 13 H -0.277 1.277 14 N -0.537 5.537 15 C 0.037 3.963 16 C -0.131 4.131 17 C -0.117 4.117 18 C 0.060 3.940 19 H 0.065 0.935 20 C -0.131 4.131 21 H 0.067 0.933 22 H 0.061 0.939 23 H 0.064 0.936 24 H 0.047 0.953 25 H 0.049 0.951 26 H -0.024 1.024 27 H 0.000 1.000 28 H 0.261 0.739 29 H 0.048 0.952 30 H 0.060 0.940 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.094 0.906 35 H 0.042 0.958 36 H 0.079 0.921 37 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.787 0.153 -9.865 16.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.027 4.027 3 H 0.078 0.922 4 C -0.127 4.127 5 C 0.005 3.995 6 C -0.581 4.581 7 H 0.073 0.927 8 C -0.199 4.199 9 N -0.573 5.573 10 Si 0.787 3.213 11 H -0.187 1.187 12 H -0.204 1.204 13 H -0.203 1.203 14 N -0.262 5.262 15 C -0.090 4.090 16 C -0.169 4.169 17 C -0.155 4.155 18 C -0.048 4.048 19 H 0.083 0.917 20 C -0.189 4.189 21 H 0.086 0.914 22 H 0.080 0.920 23 H 0.083 0.917 24 H 0.066 0.934 25 H 0.068 0.932 26 H -0.005 1.005 27 H 0.019 0.981 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.100 0.900 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.113 0.887 35 H 0.062 0.938 36 H 0.098 0.902 37 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -12.070 0.148 -9.828 15.566 hybrid contribution 0.136 -0.210 0.919 0.952 sum -11.934 -0.061 -8.909 14.892 Atomic orbital electron populations 1.22399 0.95751 1.02442 1.02507 1.21752 0.93381 0.97154 0.90441 0.92172 1.21510 0.96785 0.98864 0.95556 1.18777 0.91943 0.93841 0.94933 1.21829 0.92554 1.34383 1.09366 0.92694 1.25979 0.97383 0.96505 1.00071 1.70138 1.02554 1.45588 1.38984 0.85440 0.78395 0.78296 0.79143 1.18662 1.20413 1.20311 1.63532 1.58112 1.02529 1.02006 1.22798 0.97139 0.90970 0.98102 1.22743 0.99649 1.00063 0.94486 1.22723 1.00920 0.94832 0.97029 1.22700 0.97125 0.95420 0.89553 0.91712 1.21672 0.97863 0.98718 1.00659 0.91421 0.91972 0.91665 0.93442 0.93183 1.00526 0.98148 0.93015 0.93338 0.92136 0.90021 0.90253 0.91550 0.88727 0.93845 0.90222 0.94585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.61 8.56 71.98 0.62 -4.00 16 2 C 0.08 2.90 2.28 44.92 0.10 3.00 16 3 H 0.06 2.29 8.12 -2.39 -0.02 2.27 16 4 C -0.09 -3.89 4.54 30.59 0.14 -3.75 16 5 C 0.04 2.37 4.86 29.85 0.15 2.52 16 6 C -0.54 -32.61 9.11 25.60 0.23 -32.37 16 7 H 0.05 3.17 7.74 -2.91 -0.02 3.15 16 8 C 0.00 -0.13 5.46 84.66 0.46 0.34 16 9 N -0.93 -59.37 13.29 21.45 0.28 -59.09 16 10 Si 0.96 46.08 29.54 68.60 2.03 48.11 16 11 H -0.26 -11.97 7.11 99.48 0.71 -11.27 16 12 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 13 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 14 N -0.54 -18.67 4.26 -835.63 -3.56 -22.23 16 15 C 0.04 1.16 5.57 86.65 0.48 1.64 16 16 C -0.13 -2.90 6.94 31.77 0.22 -2.68 16 17 C -0.12 -2.59 6.49 31.98 0.21 -2.38 16 18 C 0.06 1.63 2.80 45.39 0.13 1.76 16 19 H 0.07 1.61 5.93 -2.38 -0.01 1.60 16 20 C -0.13 -3.73 9.59 71.98 0.69 -3.04 16 21 H 0.07 1.57 6.19 -2.39 -0.01 1.55 16 22 H 0.06 1.60 6.25 -2.38 -0.01 1.58 16 23 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 24 H 0.05 2.04 6.77 -2.38 -0.02 2.02 16 25 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 26 H -0.02 -1.46 8.14 -2.39 -0.02 -1.48 16 27 H 0.00 0.01 7.75 -2.39 -0.02 -0.01 16 28 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 29 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 30 H 0.06 1.82 4.83 -2.38 -0.01 1.81 16 31 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.07 1.58 8.05 -2.38 -0.02 1.56 16 34 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.04 1.37 8.13 -2.38 -0.02 1.35 16 36 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 37 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -68.01 285.94 3.18 -64.83 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: 1.00 Total: 7.36 kcal Atomic # 6 Polarization: -42.40 SS G_CDS: 3.43 Total: -38.98 kcal Atomic # 7 Polarization: -78.04 SS G_CDS: -3.28 Total: -81.32 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.11 kcal Total: -68.01 3.18 -64.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172491660.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.418 kcal (2) G-P(sol) polarization free energy of solvation -68.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds