Wall clock time and date at job start Sun Mar 29 2020 21:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.47420 * 2 1 4 4 C 1.53001 * 109.46992 * 120.00023 * 2 1 3 5 5 C 1.53005 * 109.47284 * 180.71655 * 4 2 1 6 6 C 1.50700 * 109.47261 * 179.35562 * 5 4 2 7 7 H 1.08002 * 119.99851 * 0.02562 * 6 5 4 8 8 C 1.37874 * 120.00154 * 179.97438 * 6 5 4 9 9 N 1.31509 * 120.00188 * 179.97438 * 8 6 5 10 10 Si 1.86804 * 119.99976 * 0.02562 * 8 6 5 11 11 H 1.48504 * 109.47131 * 89.99516 * 10 8 6 12 12 H 1.48491 * 109.47341 * 210.00003 * 10 8 6 13 13 H 1.48504 * 109.46979 * 329.99948 * 10 8 6 14 14 N 1.46900 * 109.47393 * 239.99909 * 2 1 3 15 15 C 1.48559 * 110.99909 * 72.70418 * 14 2 1 16 16 C 1.54382 * 104.59240 * 200.96318 * 15 14 2 17 17 C 1.54253 * 105.06442 * 23.85093 * 16 15 14 18 18 C 1.48565 * 110.99767 * 317.28761 * 14 2 1 19 19 H 1.08998 * 110.41542 * 40.13633 * 18 14 2 20 20 C 1.53005 * 110.41048 * 277.81402 * 18 14 2 21 21 H 1.09002 * 109.46878 * 187.94941 * 1 2 3 22 22 H 1.08997 * 109.47127 * 307.94926 * 1 2 3 23 23 H 1.09001 * 109.46814 * 67.95471 * 1 2 3 24 24 H 1.09002 * 109.47441 * 60.71553 * 4 2 1 25 25 H 1.09002 * 109.47464 * 300.71399 * 4 2 1 26 26 H 1.08995 * 109.46873 * 59.35464 * 5 4 2 27 27 H 1.09000 * 109.46682 * 299.35751 * 5 4 2 28 28 H 0.97007 * 119.99981 * 180.02562 * 9 8 6 29 29 H 1.09005 * 110.41020 * 319.73807 * 15 14 2 30 30 H 1.09000 * 110.40933 * 82.18393 * 15 14 2 31 31 H 1.09004 * 110.31844 * 264.95429 * 16 15 14 32 32 H 1.08998 * 110.40776 * 142.79664 * 16 15 14 33 33 H 1.08996 * 110.32614 * 241.10885 * 17 16 15 34 34 H 1.09000 * 110.32350 * 118.89374 * 17 16 15 35 35 H 1.09001 * 109.46628 * 80.50530 * 20 18 14 36 36 H 1.08998 * 109.47410 * 200.49989 * 20 18 14 37 37 H 1.09000 * 109.47442 * 320.50711 * 20 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5699 -0.7057 1.2584 6 6 4.0720 -1.4023 2.4968 7 1 3.3701 -1.8152 3.2062 8 6 5.4274 -1.5134 2.7237 9 7 5.8656 -2.1208 3.8047 10 14 6.6415 -0.7998 1.4963 11 1 6.9471 0.6065 1.8628 12 1 7.8925 -1.5994 1.5155 13 1 6.0497 -0.8391 0.1348 14 7 2.0197 -0.6925 -1.1994 15 6 1.8085 0.1346 -2.4152 16 6 1.8463 -0.8742 -3.5833 17 6 1.4701 -2.2311 -2.9535 18 6 1.2364 -1.9281 -1.4579 19 1 0.1779 -1.7547 -1.2640 20 6 1.7545 -3.0791 -0.5930 21 1 -0.3633 -1.0178 0.1421 22 1 -0.3633 0.6320 0.8103 23 1 -0.3633 0.3857 -0.9526 24 1 1.6872 -1.7526 1.2429 25 1 1.6662 -0.2149 2.1392 26 1 3.9227 0.3256 1.2532 27 1 3.9437 -1.2220 0.3742 28 1 6.8192 -2.1986 3.9645 29 1 0.8391 0.6314 -2.3733 30 1 2.6082 0.8677 -2.5199 31 1 2.8477 -0.9201 -4.0114 32 1 1.1207 -0.5975 -4.3481 33 1 2.2867 -2.9431 -3.0724 34 1 0.5587 -2.6196 -3.4079 35 1 1.3443 -2.9907 0.4130 36 1 1.4455 -4.0290 -1.0292 37 1 2.8427 -3.0374 -0.5466 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172491662.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:21 Heat of formation + Delta-G solvation = -5.029443 kcal Electronic energy + Delta-G solvation = -14966.729852 eV Core-core repulsion = 12743.624745 eV Total energy + Delta-G solvation = -2223.105108 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.49782 -34.77754 -32.63228 -31.21538 -30.19000 -28.45524 -25.37655 -25.24687 -21.82905 -20.74876 -20.25046 -18.65946 -16.62332 -16.21477 -15.06513 -14.48281 -14.17095 -13.74184 -13.44373 -12.92128 -12.72476 -12.38182 -12.17910 -11.92171 -11.61706 -11.41792 -11.30820 -11.12178 -10.94165 -10.70227 -10.57590 -10.32381 -10.12462 -9.66012 -9.43139 -9.33533 -8.94365 -8.39313 -7.94832 -5.91173 -3.86791 3.41697 3.48541 3.58221 4.28804 4.59438 4.78667 4.90472 5.10579 5.25555 5.43071 5.45181 5.49326 5.59153 5.65314 5.70603 5.81341 5.88758 5.98164 6.07094 6.09934 6.17568 6.21021 6.30309 6.37100 6.48870 6.61749 6.66696 6.94669 7.18545 7.32442 7.51489 7.59918 7.80588 7.98536 8.69626 9.15244 9.73586 11.22674 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.034004 B = 0.009261 C = 0.008699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.240138 B = 3022.714991 C = 3217.811491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.067 3.933 3 H 0.073 0.927 4 C -0.101 4.101 5 C -0.004 4.004 6 C -0.515 4.515 7 H 0.067 0.933 8 C 0.064 3.936 9 N -0.910 5.910 10 Si 0.877 3.123 11 H -0.281 1.281 12 H -0.291 1.291 13 H -0.260 1.260 14 N -0.490 5.490 15 C 0.028 3.972 16 C -0.123 4.123 17 C -0.121 4.121 18 C 0.052 3.948 19 H 0.057 0.943 20 C -0.143 4.143 21 H 0.060 0.940 22 H 0.058 0.942 23 H 0.047 0.953 24 H 0.066 0.934 25 H 0.050 0.950 26 H 0.001 0.999 27 H 0.032 0.968 28 H 0.260 0.740 29 H 0.040 0.960 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.047 0.953 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.425 2.497 -13.618 17.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.042 4.042 3 H 0.092 0.908 4 C -0.139 4.139 5 C -0.042 4.042 6 C -0.553 4.553 7 H 0.085 0.915 8 C -0.136 4.136 9 N -0.550 5.550 10 Si 0.705 3.295 11 H -0.207 1.207 12 H -0.218 1.218 13 H -0.184 1.184 14 N -0.214 5.214 15 C -0.101 4.101 16 C -0.161 4.161 17 C -0.159 4.159 18 C -0.056 4.056 19 H 0.075 0.925 20 C -0.201 4.201 21 H 0.079 0.921 22 H 0.077 0.923 23 H 0.066 0.934 24 H 0.084 0.916 25 H 0.069 0.931 26 H 0.020 0.980 27 H 0.051 0.949 28 H 0.070 0.930 29 H 0.058 0.942 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.066 0.934 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.690 2.338 -13.424 16.720 hybrid contribution -0.115 0.649 -0.579 0.877 sum -9.805 2.987 -14.002 17.353 Atomic orbital electron populations 1.22474 0.98562 1.01998 1.01114 1.21987 0.91566 0.98412 0.92189 0.90842 1.21728 0.99251 0.99739 0.93152 1.19454 0.91213 0.95955 0.97546 1.21264 0.92368 1.35737 1.05894 0.91484 1.25014 0.98476 0.94981 0.95147 1.69933 1.14160 1.44258 1.26686 0.86796 0.80525 0.78957 0.83215 1.20672 1.21774 1.18414 1.65646 1.50739 1.03742 1.01231 1.23104 0.99845 0.96377 0.90736 1.22254 1.01589 0.95123 0.97147 1.22366 1.01135 0.97423 0.94975 1.22773 0.96314 0.92032 0.94495 0.92517 1.21978 1.03519 0.95350 0.99210 0.92098 0.92300 0.93373 0.91605 0.93103 0.98026 0.94941 0.93032 0.94202 0.90572 0.91298 0.92043 0.91042 0.92055 0.91729 0.93381 0.90640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.51 7.92 37.16 0.29 -2.21 16 2 C 0.07 1.12 2.35 -67.71 -0.16 0.96 16 3 H 0.07 1.25 8.05 -51.93 -0.42 0.83 16 4 C -0.10 -2.06 4.34 -26.73 -0.12 -2.17 16 5 C 0.00 -0.11 3.88 -27.88 -0.11 -0.21 16 6 C -0.51 -15.11 9.66 -34.44 -0.33 -15.44 16 7 H 0.07 2.11 7.99 -52.49 -0.42 1.69 16 8 C 0.06 1.92 5.47 -17.82 -0.10 1.83 16 9 N -0.91 -28.95 13.96 55.43 0.77 -28.18 16 10 Si 0.88 22.73 27.47 -169.99 -4.67 18.07 16 11 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 13 H -0.26 -6.56 6.54 56.52 0.37 -6.19 16 14 N -0.49 -8.02 4.33 -214.23 -0.93 -8.95 16 15 C 0.03 0.37 6.31 -2.18 -0.01 0.36 16 16 C -0.12 -1.45 7.00 -25.35 -0.18 -1.63 16 17 C -0.12 -1.50 6.51 -25.35 -0.16 -1.66 16 18 C 0.05 0.76 2.50 -66.06 -0.17 0.59 16 19 H 0.06 0.78 5.29 -51.93 -0.27 0.51 16 20 C -0.14 -2.28 8.33 37.16 0.31 -1.97 16 21 H 0.06 0.83 6.48 -51.93 -0.34 0.49 16 22 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.05 0.60 6.45 -51.93 -0.33 0.26 16 24 H 0.07 1.33 4.59 -51.93 -0.24 1.09 16 25 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.00 0.04 7.57 -51.93 -0.39 -0.36 16 27 H 0.03 0.83 6.38 -51.93 -0.33 0.50 16 28 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 29 H 0.04 0.50 6.34 -51.93 -0.33 0.17 16 30 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.91 7.86 -51.93 -0.41 0.50 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.06 1.08 5.65 -51.93 -0.29 0.79 16 36 H 0.05 0.65 8.07 -51.93 -0.42 0.23 16 37 H 0.07 1.41 7.82 -51.93 -0.41 1.00 16 LS Contribution 276.48 15.07 4.17 4.17 Total: -1.00 -31.29 276.48 -7.69 -38.99 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: -6.30 Total: -2.53 kcal Atomic # 6 Polarization: -20.83 SS G_CDS: -0.73 Total: -21.57 kcal Atomic # 7 Polarization: -36.97 SS G_CDS: -0.15 Total: -37.13 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -4.67 Total: 18.07 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -31.29 -7.69 -38.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172491662.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.956 kcal (2) G-P(sol) polarization free energy of solvation -31.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds