Wall clock time and date at job start Sun Mar 29 2020 21:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.47420 * 2 1 4 4 C 1.53001 * 109.46992 * 120.00023 * 2 1 3 5 5 C 1.53005 * 109.47284 * 180.71655 * 4 2 1 6 6 C 1.50700 * 109.47261 * 179.35562 * 5 4 2 7 7 H 1.08002 * 119.99851 * 0.02562 * 6 5 4 8 8 C 1.37874 * 120.00154 * 179.97438 * 6 5 4 9 9 N 1.31509 * 120.00188 * 179.97438 * 8 6 5 10 10 Si 1.86804 * 119.99976 * 0.02562 * 8 6 5 11 11 H 1.48504 * 109.47131 * 89.99516 * 10 8 6 12 12 H 1.48491 * 109.47341 * 210.00003 * 10 8 6 13 13 H 1.48504 * 109.46979 * 329.99948 * 10 8 6 14 14 N 1.46900 * 109.47393 * 239.99909 * 2 1 3 15 15 C 1.48559 * 110.99909 * 72.70418 * 14 2 1 16 16 C 1.54382 * 104.59240 * 200.96318 * 15 14 2 17 17 C 1.54253 * 105.06442 * 23.85093 * 16 15 14 18 18 C 1.48565 * 110.99767 * 317.28761 * 14 2 1 19 19 H 1.08998 * 110.41542 * 40.13633 * 18 14 2 20 20 C 1.53005 * 110.41048 * 277.81402 * 18 14 2 21 21 H 1.09002 * 109.46878 * 187.94941 * 1 2 3 22 22 H 1.08997 * 109.47127 * 307.94926 * 1 2 3 23 23 H 1.09001 * 109.46814 * 67.95471 * 1 2 3 24 24 H 1.09002 * 109.47441 * 60.71553 * 4 2 1 25 25 H 1.09002 * 109.47464 * 300.71399 * 4 2 1 26 26 H 1.08995 * 109.46873 * 59.35464 * 5 4 2 27 27 H 1.09000 * 109.46682 * 299.35751 * 5 4 2 28 28 H 0.97007 * 119.99981 * 180.02562 * 9 8 6 29 29 H 1.09005 * 110.41020 * 319.73807 * 15 14 2 30 30 H 1.09000 * 110.40933 * 82.18393 * 15 14 2 31 31 H 1.09004 * 110.31844 * 264.95429 * 16 15 14 32 32 H 1.08998 * 110.40776 * 142.79664 * 16 15 14 33 33 H 1.08996 * 110.32614 * 241.10885 * 17 16 15 34 34 H 1.09000 * 110.32350 * 118.89374 * 17 16 15 35 35 H 1.09001 * 109.46628 * 80.50530 * 20 18 14 36 36 H 1.08998 * 109.47410 * 200.49989 * 20 18 14 37 37 H 1.09000 * 109.47442 * 320.50711 * 20 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5699 -0.7057 1.2584 6 6 4.0720 -1.4023 2.4968 7 1 3.3701 -1.8152 3.2062 8 6 5.4274 -1.5134 2.7237 9 7 5.8656 -2.1208 3.8047 10 14 6.6415 -0.7998 1.4963 11 1 6.9471 0.6065 1.8628 12 1 7.8925 -1.5994 1.5155 13 1 6.0497 -0.8391 0.1348 14 7 2.0197 -0.6925 -1.1994 15 6 1.8085 0.1346 -2.4152 16 6 1.8463 -0.8742 -3.5833 17 6 1.4701 -2.2311 -2.9535 18 6 1.2364 -1.9281 -1.4579 19 1 0.1779 -1.7547 -1.2640 20 6 1.7545 -3.0791 -0.5930 21 1 -0.3633 -1.0178 0.1421 22 1 -0.3633 0.6320 0.8103 23 1 -0.3633 0.3857 -0.9526 24 1 1.6872 -1.7526 1.2429 25 1 1.6662 -0.2149 2.1392 26 1 3.9227 0.3256 1.2532 27 1 3.9437 -1.2220 0.3742 28 1 6.8192 -2.1986 3.9645 29 1 0.8391 0.6314 -2.3733 30 1 2.6082 0.8677 -2.5199 31 1 2.8477 -0.9201 -4.0114 32 1 1.1207 -0.5975 -4.3481 33 1 2.2867 -2.9431 -3.0724 34 1 0.5587 -2.6196 -3.4079 35 1 1.3443 -2.9907 0.4130 36 1 1.4455 -4.0290 -1.0292 37 1 2.8427 -3.0374 -0.5466 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172491662.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:20 Heat of formation + Delta-G solvation = -24.983075 kcal Electronic energy + Delta-G solvation = -14967.595107 eV Core-core repulsion = 12743.624745 eV Total energy + Delta-G solvation = -2223.970362 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.66164 -36.28483 -34.64424 -32.50060 -31.87876 -29.62039 -27.22338 -26.35890 -23.38463 -22.02114 -21.72959 -19.92830 -18.79455 -17.45963 -16.34199 -16.13924 -15.70650 -15.08692 -14.72373 -14.54110 -14.31279 -13.88586 -13.54281 -13.34546 -13.06675 -12.95748 -12.68176 -12.45032 -12.22296 -11.99292 -11.96300 -11.70362 -11.63997 -11.36680 -11.19866 -11.03566 -10.90216 -10.68479 -9.12499 -8.26151 -6.27352 1.34747 1.37343 1.52624 2.39275 3.10214 3.15779 3.75930 3.82467 4.10019 4.13875 4.29534 4.38052 4.41715 4.59288 4.61517 4.70243 4.76770 4.87222 4.90385 4.93131 5.00363 5.07629 5.09008 5.17613 5.22431 5.28846 5.39224 5.41105 5.49650 5.72312 5.73774 5.81626 6.20440 6.32884 6.36357 6.81030 7.36909 8.90956 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.034004 B = 0.009261 C = 0.008699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.240138 B = 3022.714991 C = 3217.811491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.073 3.927 3 H 0.071 0.929 4 C -0.097 4.097 5 C 0.007 3.993 6 C -0.525 4.525 7 H 0.028 0.972 8 C 0.003 3.997 9 N -0.955 5.955 10 Si 0.949 3.051 11 H -0.269 1.269 12 H -0.285 1.285 13 H -0.249 1.249 14 N -0.520 5.520 15 C 0.026 3.974 16 C -0.118 4.118 17 C -0.118 4.118 18 C 0.051 3.949 19 H 0.071 0.929 20 C -0.140 4.140 21 H 0.060 0.940 22 H 0.064 0.936 23 H 0.068 0.932 24 H 0.062 0.938 25 H 0.043 0.957 26 H 0.000 1.000 27 H 0.027 0.973 28 H 0.264 0.736 29 H 0.056 0.944 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.087 0.913 33 H 0.062 0.938 34 H 0.085 0.915 35 H 0.048 0.952 36 H 0.070 0.930 37 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.352 3.463 -16.256 20.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.036 4.036 3 H 0.089 0.911 4 C -0.135 4.135 5 C -0.030 4.030 6 C -0.563 4.563 7 H 0.047 0.953 8 C -0.193 4.193 9 N -0.597 5.597 10 Si 0.772 3.228 11 H -0.195 1.195 12 H -0.211 1.211 13 H -0.173 1.173 14 N -0.245 5.245 15 C -0.101 4.101 16 C -0.156 4.156 17 C -0.156 4.156 18 C -0.057 4.057 19 H 0.089 0.911 20 C -0.197 4.197 21 H 0.079 0.921 22 H 0.083 0.917 23 H 0.087 0.913 24 H 0.081 0.919 25 H 0.062 0.938 26 H 0.018 0.982 27 H 0.045 0.955 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.106 0.894 33 H 0.081 0.919 34 H 0.104 0.896 35 H 0.066 0.934 36 H 0.088 0.912 37 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -10.634 3.310 -16.071 19.553 hybrid contribution 0.144 0.287 0.328 0.459 sum -10.490 3.597 -15.743 19.257 Atomic orbital electron populations 1.22355 0.95906 1.02373 1.02541 1.21776 0.93623 0.97440 0.90721 0.91111 1.21622 0.96198 1.00294 0.95354 1.19303 0.94299 0.94718 0.94729 1.21627 0.92096 1.35697 1.06871 0.95342 1.25964 1.00693 0.95436 0.97186 1.70079 1.14863 1.45893 1.28843 0.85673 0.77806 0.78498 0.80774 1.19465 1.21054 1.17294 1.65555 1.51932 1.04938 1.02074 1.23165 1.00499 0.96465 0.89984 1.22256 1.02279 0.94097 0.96980 1.22364 1.02061 0.97756 0.93428 1.22817 0.96615 0.90644 0.95620 0.91139 1.21922 1.01049 0.97642 0.99106 0.92066 0.91670 0.91296 0.91941 0.93835 0.98195 0.95487 0.92730 0.92619 0.91072 0.91666 0.89400 0.91899 0.89597 0.93364 0.91161 0.94095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.29 7.92 71.98 0.57 -3.72 16 2 C 0.07 2.34 2.35 44.92 0.11 2.44 16 3 H 0.07 2.28 8.05 -2.39 -0.02 2.26 16 4 C -0.10 -3.97 4.34 30.60 0.13 -3.84 16 5 C 0.01 0.35 3.88 29.85 0.12 0.46 16 6 C -0.52 -31.81 9.66 25.60 0.25 -31.57 16 7 H 0.03 1.88 7.99 -2.91 -0.02 1.86 16 8 C 0.00 0.19 5.47 84.65 0.46 0.65 16 9 N -0.96 -62.31 13.96 21.45 0.30 -62.02 16 10 Si 0.95 47.26 27.47 68.60 1.88 49.15 16 11 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 12 H -0.28 -13.80 7.11 99.48 0.71 -13.09 16 13 H -0.25 -11.90 6.54 99.48 0.65 -11.25 16 14 N -0.52 -16.08 4.33 -831.70 -3.60 -19.69 16 15 C 0.03 0.64 6.31 86.45 0.55 1.18 16 16 C -0.12 -2.38 7.00 31.49 0.22 -2.16 16 17 C -0.12 -2.56 6.51 31.49 0.20 -2.35 16 18 C 0.05 1.37 2.50 45.06 0.11 1.48 16 19 H 0.07 1.72 5.29 -2.39 -0.01 1.71 16 20 C -0.14 -4.39 8.33 71.98 0.60 -3.79 16 21 H 0.06 1.51 6.48 -2.39 -0.02 1.50 16 22 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 23 H 0.07 1.44 6.45 -2.39 -0.02 1.42 16 24 H 0.06 2.58 4.59 -2.39 -0.01 2.57 16 25 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.00 -0.02 7.57 -2.39 -0.02 -0.03 16 27 H 0.03 1.38 6.38 -2.39 -0.02 1.36 16 28 H 0.26 16.07 8.31 -92.70 -0.77 15.29 16 29 H 0.06 1.16 6.34 -2.38 -0.02 1.15 16 30 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 32 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.06 1.47 7.86 -2.39 -0.02 1.45 16 34 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.05 1.63 5.65 -2.39 -0.01 1.62 16 36 H 0.07 1.82 8.07 -2.39 -0.02 1.80 16 37 H 0.04 1.54 7.82 -2.39 -0.02 1.52 16 Total: -1.00 -68.54 276.48 2.86 -65.68 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: 0.96 Total: 8.08 kcal Atomic # 6 Polarization: -44.52 SS G_CDS: 3.32 Total: -41.20 kcal Atomic # 7 Polarization: -78.40 SS G_CDS: -3.30 Total: -81.70 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 1.88 Total: 49.15 kcal Total: -68.54 2.86 -65.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172491662.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.695 kcal (2) G-P(sol) polarization free energy of solvation -68.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds