Wall clock time and date at job start Sun Mar 29 2020 21:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47087 * 2 1 4 4 C 1.53003 * 109.47474 * 239.99899 * 2 1 3 5 5 C 1.52994 * 109.47081 * 174.32463 * 4 2 1 6 6 C 1.50705 * 109.46986 * 184.67134 * 5 4 2 7 7 H 1.08004 * 119.99889 * 359.97438 * 6 5 4 8 8 C 1.37871 * 119.99950 * 179.97438 * 6 5 4 9 9 N 1.31508 * 120.00360 * 359.97438 * 8 6 5 10 10 Si 1.86808 * 119.99764 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.46954 * 60.00128 * 10 8 6 12 12 H 1.48503 * 109.46656 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.46999 * 299.99626 * 10 8 6 14 14 N 1.46905 * 109.47029 * 119.99608 * 2 1 3 15 15 C 1.47479 * 110.99965 * 203.99493 * 14 2 1 16 16 C 1.53519 * 87.93092 * 138.70519 * 15 14 2 17 17 C 1.52999 * 114.16890 * 220.33139 * 16 15 14 18 18 C 1.52999 * 114.33920 * 87.63662 * 16 15 14 19 19 C 1.47480 * 111.00245 * 299.97102 * 14 2 1 20 20 H 1.09005 * 109.46764 * 180.02562 * 1 2 3 21 21 H 1.08992 * 109.47200 * 299.99867 * 1 2 3 22 22 H 1.08994 * 109.46921 * 60.00391 * 1 2 3 23 23 H 1.08994 * 109.46824 * 294.32440 * 4 2 1 24 24 H 1.08995 * 109.46851 * 54.32097 * 4 2 1 25 25 H 1.09004 * 109.47571 * 304.66814 * 5 4 2 26 26 H 1.09002 * 109.47706 * 64.67038 * 5 4 2 27 27 H 0.97005 * 120.00458 * 180.02562 * 9 8 6 28 28 H 1.08993 * 113.48050 * 253.47290 * 15 14 2 29 29 H 1.09002 * 113.47868 * 23.94102 * 15 14 2 30 30 H 1.09005 * 109.46679 * 153.84242 * 17 16 15 31 31 H 1.09003 * 109.47241 * 273.83745 * 17 16 15 32 32 H 1.08989 * 109.47458 * 33.84196 * 17 16 15 33 33 H 1.08994 * 109.47266 * 326.07731 * 18 16 15 34 34 H 1.09001 * 109.47113 * 86.07884 * 18 16 15 35 35 H 1.09001 * 109.47240 * 206.07685 * 18 16 15 36 36 H 1.09004 * 113.47398 * 336.06381 * 19 14 2 37 37 H 1.08994 * 113.47361 * 106.52819 * 19 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5634 -0.5989 -1.3225 6 6 4.0550 -1.2090 -2.6098 7 1 3.3513 -1.6412 -3.3059 8 6 5.4030 -1.2154 -2.8990 9 7 6.2598 -0.6886 -2.0518 10 14 6.0124 -1.9723 -4.4944 11 1 5.4020 -1.2596 -5.6453 12 1 7.4909 -1.8523 -4.5662 13 1 5.6289 -3.4062 -4.5402 14 7 2.0197 -0.6924 1.1995 15 6 3.3817 -0.2470 1.5479 16 6 2.9453 -0.2469 3.0197 17 6 3.4779 0.9359 3.8310 18 6 3.1170 -1.5919 3.7285 19 6 1.5474 -0.0232 2.4260 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5137 -0.8900 23 1 1.7621 -1.7740 -1.1998 24 1 1.5961 -0.2695 -2.1363 25 1 3.8455 0.4535 -1.2883 26 1 4.0111 -1.1227 -0.4779 27 1 7.2083 -0.6928 -2.2554 28 1 4.1510 -0.9858 1.3232 29 1 3.6250 0.7449 1.1670 30 1 2.8047 1.1374 4.6643 31 1 4.4696 0.6961 4.2148 32 1 3.5389 1.8167 3.1920 33 1 2.9366 -2.4011 3.0209 34 1 4.1317 -1.6700 4.1188 35 1 2.4050 -1.6628 4.5507 36 1 1.3010 1.0284 2.2794 37 1 0.7621 -0.5724 2.9453 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172492034.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:42 Heat of formation + Delta-G solvation = 10.867849 kcal Electronic energy + Delta-G solvation = -14667.032458 eV Core-core repulsion = 12444.616709 eV Total energy + Delta-G solvation = -2222.415749 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.30237 -35.14885 -32.86446 -30.72013 -29.35342 -27.22621 -25.81922 -24.68071 -23.84404 -21.08827 -19.49698 -17.93251 -16.20073 -15.64674 -14.92412 -14.58688 -14.42348 -13.71554 -13.00833 -12.86926 -12.60313 -12.27618 -12.18336 -12.08062 -11.69076 -11.53397 -11.23057 -11.00962 -10.89772 -10.79020 -10.55903 -10.41249 -9.92883 -9.83574 -9.52690 -9.10970 -8.87596 -8.32910 -8.21780 -5.93389 -3.94372 3.36886 3.40757 3.43784 4.45475 4.51199 4.60030 5.04283 5.35240 5.40317 5.42021 5.49167 5.55077 5.72366 5.76878 5.85434 5.89857 5.96189 6.08308 6.11617 6.18325 6.26450 6.32074 6.38261 6.44699 6.52696 6.64559 6.72755 6.85905 7.01236 7.28123 7.62783 7.76427 7.98128 8.08736 8.52359 9.12369 9.68576 11.17736 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.034437 B = 0.007991 C = 0.006935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.885457 B = 3503.174825 C = 4036.493009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.045 3.955 3 H 0.041 0.959 4 C -0.100 4.100 5 C 0.019 3.981 6 C -0.518 4.518 7 H 0.052 0.948 8 C 0.057 3.943 9 N -0.896 5.896 10 Si 0.889 3.111 11 H -0.278 1.278 12 H -0.288 1.288 13 H -0.277 1.277 14 N -0.458 5.458 15 C 0.021 3.979 16 C -0.104 4.104 17 C -0.134 4.134 18 C -0.117 4.117 19 C 0.005 3.995 20 H 0.059 0.941 21 H 0.045 0.955 22 H 0.055 0.945 23 H 0.054 0.946 24 H 0.048 0.952 25 H 0.007 0.993 26 H 0.029 0.971 27 H 0.259 0.741 28 H 0.092 0.908 29 H 0.068 0.932 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.067 0.933 34 H 0.053 0.947 35 H 0.050 0.950 36 H 0.060 0.940 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.706 2.347 10.376 13.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.064 4.064 3 H 0.059 0.941 4 C -0.138 4.138 5 C -0.018 4.018 6 C -0.557 4.557 7 H 0.070 0.930 8 C -0.144 4.144 9 N -0.536 5.536 10 Si 0.717 3.283 11 H -0.204 1.204 12 H -0.213 1.213 13 H -0.203 1.203 14 N -0.181 5.181 15 C -0.108 4.108 16 C -0.104 4.104 17 C -0.191 4.191 18 C -0.174 4.174 19 C -0.125 4.125 20 H 0.078 0.922 21 H 0.064 0.936 22 H 0.074 0.926 23 H 0.073 0.927 24 H 0.067 0.933 25 H 0.025 0.975 26 H 0.047 0.953 27 H 0.069 0.931 28 H 0.110 0.890 29 H 0.086 0.914 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.688 1.675 10.219 12.897 hybrid contribution 0.544 0.593 -0.982 1.270 sum -7.144 2.268 9.237 11.895 Atomic orbital electron populations 1.21843 0.95566 1.01938 1.00706 1.22360 0.94448 0.96220 0.93372 0.94098 1.21618 0.99971 0.99077 0.93102 1.19248 0.88798 0.96517 0.97251 1.21271 0.92028 1.37793 1.04569 0.92996 1.24994 0.97038 0.95630 0.96729 1.69946 1.02188 1.45607 1.35831 0.86706 0.77520 0.79857 0.84191 1.20375 1.21344 1.20291 1.68942 1.04377 1.44487 1.00251 1.23979 0.93780 1.00869 0.92134 1.22100 0.96595 0.96261 0.95489 1.21699 1.00766 0.97118 0.99543 1.21430 1.00853 0.95520 0.99623 1.23855 0.96989 0.97959 0.93659 0.92231 0.93619 0.92577 0.92713 0.93329 0.97465 0.95263 0.93113 0.88965 0.91400 0.92838 0.92405 0.92717 0.91372 0.92759 0.93078 0.92157 0.90682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.09 37.16 0.34 -1.81 16 2 C 0.04 0.81 1.98 -67.71 -0.13 0.68 16 3 H 0.04 0.77 7.52 -51.93 -0.39 0.38 16 4 C -0.10 -2.18 4.83 -26.73 -0.13 -2.31 16 5 C 0.02 0.49 4.03 -27.88 -0.11 0.38 16 6 C -0.52 -15.10 9.11 -34.44 -0.31 -15.41 16 7 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 8 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 9 N -0.90 -27.17 13.29 55.43 0.74 -26.44 16 10 Si 0.89 22.13 29.54 -169.99 -5.02 17.11 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 13 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 14 N -0.46 -8.08 5.93 -236.52 -1.40 -9.48 16 15 C 0.02 0.38 4.71 -7.54 -0.04 0.34 16 16 C -0.10 -1.47 1.52 -153.97 -0.23 -1.70 16 17 C -0.13 -1.62 9.29 37.16 0.35 -1.27 16 18 C -0.12 -1.54 9.22 37.16 0.34 -1.19 16 19 C 0.00 0.07 5.61 -7.54 -0.04 0.02 16 20 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 21 H 0.04 0.61 7.03 -51.93 -0.37 0.24 16 22 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 24 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 25 H 0.01 0.20 8.14 -51.93 -0.42 -0.23 16 26 H 0.03 0.80 5.47 -51.93 -0.28 0.52 16 27 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 28 H 0.09 1.90 6.83 -51.93 -0.35 1.54 16 29 H 0.07 1.28 7.33 -51.93 -0.38 0.90 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 32 H 0.05 0.67 7.90 -51.94 -0.41 0.26 16 33 H 0.07 1.00 7.93 -51.93 -0.41 0.59 16 34 H 0.05 0.67 8.13 -51.93 -0.42 0.25 16 35 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.83 7.62 -51.93 -0.40 0.43 16 37 H 0.07 1.00 8.11 -51.93 -0.42 0.58 16 LS Contribution 289.98 15.07 4.37 4.37 Total: -1.00 -29.99 289.98 -8.15 -38.14 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: -6.76 Total: -2.99 kcal Atomic # 6 Polarization: -20.63 SS G_CDS: -0.07 Total: -20.71 kcal Atomic # 7 Polarization: -35.25 SS G_CDS: -0.67 Total: -35.92 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -29.99 -8.15 -38.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172492034.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.004 kcal (2) G-P(sol) polarization free energy of solvation -29.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds