Wall clock time and date at job start Sun Mar 29 2020 21:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47087 * 2 1 4 4 C 1.53003 * 109.47474 * 239.99899 * 2 1 3 5 5 C 1.52994 * 109.47081 * 174.32463 * 4 2 1 6 6 C 1.50705 * 109.46986 * 184.67134 * 5 4 2 7 7 H 1.08004 * 119.99889 * 359.97438 * 6 5 4 8 8 C 1.37871 * 119.99950 * 179.97438 * 6 5 4 9 9 N 1.31508 * 120.00360 * 359.97438 * 8 6 5 10 10 Si 1.86808 * 119.99764 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.46954 * 60.00128 * 10 8 6 12 12 H 1.48503 * 109.46656 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.46999 * 299.99626 * 10 8 6 14 14 N 1.46905 * 109.47029 * 119.99608 * 2 1 3 15 15 C 1.47479 * 110.99965 * 203.99493 * 14 2 1 16 16 C 1.53519 * 87.93092 * 138.70519 * 15 14 2 17 17 C 1.52999 * 114.16890 * 220.33139 * 16 15 14 18 18 C 1.52999 * 114.33920 * 87.63662 * 16 15 14 19 19 C 1.47480 * 111.00245 * 299.97102 * 14 2 1 20 20 H 1.09005 * 109.46764 * 180.02562 * 1 2 3 21 21 H 1.08992 * 109.47200 * 299.99867 * 1 2 3 22 22 H 1.08994 * 109.46921 * 60.00391 * 1 2 3 23 23 H 1.08994 * 109.46824 * 294.32440 * 4 2 1 24 24 H 1.08995 * 109.46851 * 54.32097 * 4 2 1 25 25 H 1.09004 * 109.47571 * 304.66814 * 5 4 2 26 26 H 1.09002 * 109.47706 * 64.67038 * 5 4 2 27 27 H 0.97005 * 120.00458 * 180.02562 * 9 8 6 28 28 H 1.08993 * 113.48050 * 253.47290 * 15 14 2 29 29 H 1.09002 * 113.47868 * 23.94102 * 15 14 2 30 30 H 1.09005 * 109.46679 * 153.84242 * 17 16 15 31 31 H 1.09003 * 109.47241 * 273.83745 * 17 16 15 32 32 H 1.08989 * 109.47458 * 33.84196 * 17 16 15 33 33 H 1.08994 * 109.47266 * 326.07731 * 18 16 15 34 34 H 1.09001 * 109.47113 * 86.07884 * 18 16 15 35 35 H 1.09001 * 109.47240 * 206.07685 * 18 16 15 36 36 H 1.09004 * 113.47398 * 336.06381 * 19 14 2 37 37 H 1.08994 * 113.47361 * 106.52819 * 19 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5634 -0.5989 -1.3225 6 6 4.0550 -1.2090 -2.6098 7 1 3.3513 -1.6412 -3.3059 8 6 5.4030 -1.2154 -2.8990 9 7 6.2598 -0.6886 -2.0518 10 14 6.0124 -1.9723 -4.4944 11 1 5.4020 -1.2596 -5.6453 12 1 7.4909 -1.8523 -4.5662 13 1 5.6289 -3.4062 -4.5402 14 7 2.0197 -0.6924 1.1995 15 6 3.3817 -0.2470 1.5479 16 6 2.9453 -0.2469 3.0197 17 6 3.4779 0.9359 3.8310 18 6 3.1170 -1.5919 3.7285 19 6 1.5474 -0.0232 2.4260 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5137 -0.8900 23 1 1.7621 -1.7740 -1.1998 24 1 1.5961 -0.2695 -2.1363 25 1 3.8455 0.4535 -1.2883 26 1 4.0111 -1.1227 -0.4779 27 1 7.2083 -0.6928 -2.2554 28 1 4.1510 -0.9858 1.3232 29 1 3.6250 0.7449 1.1670 30 1 2.8047 1.1374 4.6643 31 1 4.4696 0.6961 4.2148 32 1 3.5389 1.8167 3.1920 33 1 2.9366 -2.4011 3.0209 34 1 4.1317 -1.6700 4.1188 35 1 2.4050 -1.6628 4.5507 36 1 1.3010 1.0284 2.2794 37 1 0.7621 -0.5724 2.9453 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172492034.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:42 Heat of formation + Delta-G solvation = -8.491333 kcal Electronic energy + Delta-G solvation = -14667.871936 eV Core-core repulsion = 12444.616709 eV Total energy + Delta-G solvation = -2223.255226 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.62002 -36.74486 -34.89303 -32.31103 -30.92985 -28.25071 -27.50759 -26.21950 -25.30085 -22.99978 -21.02456 -19.19117 -18.40880 -17.09544 -16.56872 -16.22661 -15.83710 -15.00800 -14.48956 -14.44585 -14.13285 -13.92408 -13.48975 -13.27906 -13.17027 -12.86515 -12.82634 -12.75065 -12.47842 -12.24259 -12.13044 -11.96175 -11.58924 -11.44711 -11.11807 -10.97758 -10.75726 -10.48824 -9.68884 -8.19064 -6.29745 1.36984 1.40401 1.48200 2.40026 3.12900 3.15100 3.38792 3.84532 4.05174 4.09801 4.20202 4.36109 4.47133 4.53412 4.66803 4.76025 4.82208 4.85208 4.89412 4.94172 4.99216 5.03346 5.08718 5.17795 5.19038 5.23664 5.29965 5.34641 5.51116 5.56639 5.60529 5.79281 5.89068 6.27275 6.29988 6.86840 7.38301 8.91851 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.034437 B = 0.007991 C = 0.006935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.885457 B = 3503.174825 C = 4036.493009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.048 3.952 3 H 0.031 0.969 4 C -0.091 4.091 5 C 0.029 3.971 6 C -0.548 4.548 7 H 0.054 0.946 8 C 0.001 3.999 9 N -0.929 5.929 10 Si 0.962 3.038 11 H -0.267 1.267 12 H -0.281 1.281 13 H -0.269 1.269 14 N -0.474 5.474 15 C 0.014 3.986 16 C -0.091 4.091 17 C -0.130 4.130 18 C -0.115 4.115 19 C 0.013 3.987 20 H 0.059 0.941 21 H 0.069 0.931 22 H 0.065 0.935 23 H 0.047 0.953 24 H 0.050 0.950 25 H -0.022 1.022 26 H 0.009 0.991 27 H 0.263 0.737 28 H 0.052 0.948 29 H 0.049 0.951 30 H 0.079 0.921 31 H 0.060 0.940 32 H 0.048 0.952 33 H 0.045 0.955 34 H 0.058 0.942 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.016 2.309 11.003 14.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.061 4.061 3 H 0.049 0.951 4 C -0.129 4.129 5 C -0.007 4.007 6 C -0.586 4.586 7 H 0.072 0.928 8 C -0.196 4.196 9 N -0.569 5.569 10 Si 0.786 3.214 11 H -0.192 1.192 12 H -0.206 1.206 13 H -0.194 1.194 14 N -0.197 5.197 15 C -0.115 4.115 16 C -0.091 4.091 17 C -0.188 4.188 18 C -0.172 4.172 19 C -0.116 4.116 20 H 0.078 0.922 21 H 0.088 0.912 22 H 0.084 0.916 23 H 0.066 0.934 24 H 0.069 0.931 25 H -0.003 1.003 26 H 0.027 0.973 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.098 0.902 31 H 0.079 0.921 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.077 0.923 35 H 0.096 0.904 36 H 0.089 0.911 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -9.015 1.637 10.852 14.203 hybrid contribution 0.987 0.604 -1.162 1.640 sum -8.028 2.241 9.690 12.781 Atomic orbital electron populations 1.21764 0.92402 1.02505 1.02416 1.22256 0.96850 0.94941 0.92026 0.95068 1.21460 0.96679 0.99213 0.95505 1.19074 0.92000 0.94021 0.95656 1.21730 0.92762 1.38417 1.05700 0.92812 1.25940 0.97189 0.95922 1.00591 1.70086 1.02562 1.46453 1.37848 0.85554 0.77116 0.79174 0.79518 1.19243 1.20587 1.19354 1.68892 1.04176 1.45263 1.01383 1.23869 0.93315 0.98476 0.95872 1.22110 0.95980 0.97840 0.93210 1.21682 1.01539 0.95705 0.99841 1.21421 1.02043 0.93987 0.99730 1.23897 0.97471 0.98566 0.91617 0.92176 0.91235 0.91592 0.93427 0.93103 1.00326 0.97286 0.92870 0.92974 0.93263 0.90174 0.92091 0.93332 0.93568 0.92257 0.90353 0.91058 0.88635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.71 9.09 71.98 0.65 -3.06 16 2 C 0.05 1.75 1.98 44.92 0.09 1.84 16 3 H 0.03 1.19 7.52 -2.39 -0.02 1.17 16 4 C -0.09 -4.05 4.83 30.59 0.15 -3.90 16 5 C 0.03 1.63 4.03 29.85 0.12 1.75 16 6 C -0.55 -32.81 9.11 25.60 0.23 -32.57 16 7 H 0.05 3.11 7.74 -2.91 -0.02 3.09 16 8 C 0.00 0.08 5.46 84.65 0.46 0.54 16 9 N -0.93 -57.95 13.29 21.44 0.28 -57.67 16 10 Si 0.96 45.75 29.54 68.60 2.03 47.78 16 11 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 12 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 13 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 14 N -0.47 -16.74 5.93 -902.21 -5.35 -22.09 16 15 C 0.01 0.52 4.71 83.58 0.39 0.92 16 16 C -0.09 -2.47 1.52 -51.83 -0.08 -2.55 16 17 C -0.13 -2.90 9.29 71.98 0.67 -2.23 16 18 C -0.11 -2.85 9.22 71.98 0.66 -2.19 16 19 C 0.01 0.34 5.61 83.58 0.47 0.81 16 20 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 21 H 0.07 1.62 7.03 -2.39 -0.02 1.60 16 22 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 23 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 24 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 25 H -0.02 -1.30 8.14 -2.38 -0.02 -1.32 16 26 H 0.01 0.52 5.47 -2.39 -0.01 0.51 16 27 H 0.26 15.39 8.31 -92.70 -0.77 14.62 16 28 H 0.05 2.33 6.83 -2.39 -0.02 2.31 16 29 H 0.05 1.99 7.33 -2.39 -0.02 1.97 16 30 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 31 H 0.06 1.32 8.13 -2.39 -0.02 1.30 16 32 H 0.05 1.14 7.90 -2.39 -0.02 1.12 16 33 H 0.05 1.35 7.93 -2.39 -0.02 1.33 16 34 H 0.06 1.40 8.13 -2.39 -0.02 1.38 16 35 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.07 1.76 7.62 -2.38 -0.02 1.74 16 37 H 0.10 2.19 8.11 -2.39 -0.02 2.17 16 Total: -1.00 -66.20 289.98 1.78 -64.42 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: 1.00 Total: 8.20 kcal Atomic # 6 Polarization: -44.47 SS G_CDS: 3.82 Total: -40.64 kcal Atomic # 7 Polarization: -74.69 SS G_CDS: -5.07 Total: -79.76 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -66.20 1.78 -64.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172492034.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.925 kcal (2) G-P(sol) polarization free energy of solvation -66.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds