Wall clock time and date at job start Sun Mar 29 2020 21:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47182 * 2 1 4 4 C 1.53006 * 109.47089 * 119.99729 * 2 1 3 5 5 C 1.53001 * 109.46993 * 185.00107 * 4 2 1 6 6 C 1.50697 * 109.47034 * 180.02562 * 5 4 2 7 7 H 1.08000 * 120.00130 * 359.97438 * 6 5 4 8 8 C 1.37878 * 120.00362 * 179.97438 * 6 5 4 9 9 N 1.31512 * 120.00535 * 179.97438 * 8 6 5 10 10 Si 1.86803 * 119.99604 * 359.97438 * 8 6 5 11 11 H 1.48507 * 109.47019 * 89.99965 * 10 8 6 12 12 H 1.48497 * 109.47216 * 209.99624 * 10 8 6 13 13 H 1.48500 * 109.47318 * 329.99921 * 10 8 6 14 14 N 1.46900 * 109.47205 * 239.99127 * 2 1 3 15 15 C 1.46892 * 111.00324 * 306.05139 * 14 2 1 16 16 C 1.46903 * 110.99412 * 70.00435 * 14 2 1 17 17 C 1.53003 * 109.47061 * 170.00126 * 16 14 2 18 18 C 1.53001 * 117.51964 * 116.28123 * 17 16 14 19 19 C 1.52999 * 60.00190 * 107.47982 * 18 17 16 20 20 H 1.09000 * 109.46860 * 60.00211 * 1 2 3 21 21 H 1.08996 * 109.46804 * 180.02562 * 1 2 3 22 22 H 1.09007 * 109.46982 * 300.00348 * 1 2 3 23 23 H 1.09005 * 109.47083 * 304.99674 * 4 2 1 24 24 H 1.08996 * 109.47477 * 64.99751 * 4 2 1 25 25 H 1.09005 * 109.46852 * 299.99709 * 5 4 2 26 26 H 1.08996 * 109.47299 * 59.99535 * 5 4 2 27 27 H 0.96998 * 120.00119 * 180.02562 * 9 8 6 28 28 H 1.09000 * 109.47291 * 183.95092 * 15 14 2 29 29 H 1.08996 * 109.47225 * 303.95004 * 15 14 2 30 30 H 1.08998 * 109.47457 * 63.94701 * 15 14 2 31 31 H 1.08999 * 109.47623 * 49.99628 * 16 14 2 32 32 H 1.09005 * 109.46959 * 289.99642 * 16 14 2 33 33 H 1.09002 * 115.54973 * 330.57907 * 17 16 14 34 34 H 1.09001 * 117.49733 * 214.97413 * 18 17 16 35 35 H 1.08995 * 117.49577 * 359.97438 * 18 17 16 36 36 H 1.09004 * 117.50150 * 252.51496 * 19 18 17 37 37 H 1.09004 * 117.49681 * 107.48417 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5649 -0.6132 1.3138 6 6 4.0672 -1.3241 2.5439 7 1 3.3688 -1.8045 3.2131 8 6 5.4186 -1.3612 2.8152 9 7 5.8570 -1.9812 3.8890 10 14 6.6267 -0.5310 1.6574 11 1 6.8325 0.8768 2.0830 12 1 7.9235 -1.2536 1.6937 13 1 6.0846 -0.5560 0.2751 14 7 2.0197 -0.6927 -1.1993 15 6 1.4343 -2.0356 -1.3076 16 6 1.7530 0.0970 -2.4090 17 6 2.4885 -0.5260 -3.5972 18 6 1.6391 -1.0775 -4.7441 19 6 2.4306 0.2182 -4.9329 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 1.6054 -0.2616 2.1371 24 1 1.7517 -1.7714 1.2058 25 1 3.9995 -1.0728 0.4260 26 1 3.8532 0.4370 1.3573 27 1 6.8076 -2.0070 4.0799 28 1 1.8664 -2.5523 -2.1646 29 1 1.6466 -2.5988 -0.3989 30 1 0.3556 -1.9522 -1.4397 31 1 2.1025 1.1187 -2.2604 32 1 0.6814 0.1051 -2.6087 33 1 3.4107 -1.0540 -3.3548 34 1 2.0026 -1.9685 -5.2561 35 1 0.5561 -0.9970 -4.6520 36 1 1.8683 1.1514 -4.9651 37 1 3.3149 0.1796 -5.5691 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172494627.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:02 Heat of formation + Delta-G solvation = 15.715033 kcal Electronic energy + Delta-G solvation = -14414.928901 eV Core-core repulsion = 12192.723342 eV Total energy + Delta-G solvation = -2222.205560 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.80337 -36.69084 -33.30234 -31.57485 -29.40717 -27.50413 -25.51103 -24.18607 -22.41559 -20.88397 -20.10779 -19.06084 -16.53601 -16.27408 -15.43739 -14.68913 -14.24943 -14.01812 -13.62398 -13.19039 -12.78584 -12.49662 -12.25509 -11.79124 -11.70373 -11.54467 -11.43032 -11.37194 -10.95330 -10.84314 -10.48776 -10.18122 -9.89139 -9.73111 -9.61273 -9.40270 -8.97902 -8.40925 -7.86110 -5.92516 -3.88628 3.41022 3.47891 3.57214 3.76038 4.18358 4.58242 4.79215 4.90752 5.04279 5.28930 5.33930 5.43463 5.47455 5.55118 5.57925 5.65165 5.72219 5.78558 5.83796 5.93585 6.03830 6.09070 6.23196 6.25630 6.33380 6.37752 6.56442 6.74996 7.11611 7.44587 7.48008 7.56664 7.75948 7.96398 8.67601 9.13486 9.71869 11.21293 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.030903 B = 0.008009 C = 0.006892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.854051 B = 3495.176262 C = 4061.558474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.077 3.923 3 H 0.076 0.924 4 C -0.094 4.094 5 C -0.007 4.007 6 C -0.517 4.517 7 H 0.067 0.933 8 C 0.064 3.936 9 N -0.910 5.910 10 Si 0.878 3.122 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.260 1.260 14 N -0.524 5.524 15 C 0.023 3.977 16 C 0.085 3.915 17 C -0.141 4.141 18 C -0.185 4.185 19 C -0.181 4.181 20 H 0.045 0.955 21 H 0.057 0.943 22 H 0.059 0.941 23 H 0.054 0.946 24 H 0.055 0.945 25 H 0.031 0.969 26 H 0.004 0.996 27 H 0.261 0.739 28 H 0.062 0.938 29 H 0.076 0.924 30 H 0.021 0.979 31 H 0.073 0.927 32 H 0.030 0.970 33 H 0.113 0.887 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.714 3.849 -15.339 18.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.031 4.031 3 H 0.094 0.906 4 C -0.132 4.132 5 C -0.044 4.044 6 C -0.555 4.555 7 H 0.086 0.914 8 C -0.136 4.136 9 N -0.550 5.550 10 Si 0.706 3.294 11 H -0.206 1.206 12 H -0.217 1.217 13 H -0.184 1.184 14 N -0.247 5.247 15 C -0.125 4.125 16 C -0.043 4.043 17 C -0.159 4.159 18 C -0.222 4.222 19 C -0.219 4.219 20 H 0.064 0.936 21 H 0.076 0.924 22 H 0.078 0.922 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.049 0.951 26 H 0.023 0.977 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.094 0.906 30 H 0.039 0.961 31 H 0.092 0.908 32 H 0.048 0.952 33 H 0.131 0.869 34 H 0.109 0.891 35 H 0.107 0.893 36 H 0.109 0.891 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -9.041 3.749 -15.193 18.073 hybrid contribution -0.147 0.486 -0.578 0.770 sum -9.189 4.235 -15.771 18.737 Atomic orbital electron populations 1.22487 0.98616 1.01869 1.01308 1.21925 0.91439 0.98456 0.91270 0.90601 1.21543 0.99127 0.99052 0.93438 1.19479 0.91356 0.96030 0.97543 1.21258 0.92799 1.33944 1.07477 0.91441 1.25022 0.98456 0.95091 0.95055 1.69930 1.14413 1.44119 1.26510 0.86781 0.80367 0.79467 0.82781 1.20610 1.21741 1.18419 1.62106 1.58560 1.02669 1.01390 1.22423 0.96215 0.91039 1.02863 1.21663 0.96480 0.97067 0.89073 1.22353 1.01596 1.03181 0.88805 1.23021 0.98146 0.97475 1.03562 1.22924 1.02663 0.95973 1.00314 0.93601 0.92380 0.92197 0.92735 0.92665 0.95115 0.97743 0.92985 0.91891 0.90566 0.96090 0.90834 0.95163 0.86859 0.89089 0.89268 0.89108 0.88932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.50 8.44 37.16 0.31 -2.19 16 2 C 0.08 1.27 2.31 -67.71 -0.16 1.11 16 3 H 0.08 1.26 7.93 -51.93 -0.41 0.85 16 4 C -0.09 -1.89 4.55 -26.73 -0.12 -2.01 16 5 C -0.01 -0.16 3.93 -27.88 -0.11 -0.27 16 6 C -0.52 -15.19 9.66 -34.44 -0.33 -15.53 16 7 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 8 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 9 N -0.91 -28.92 13.96 55.43 0.77 -28.14 16 10 Si 0.88 22.64 27.47 -169.99 -4.67 17.97 16 11 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 12 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 13 H -0.26 -6.51 6.54 56.52 0.37 -6.14 16 14 N -0.52 -8.39 4.17 -234.89 -0.98 -9.37 16 15 C 0.02 0.33 8.49 60.06 0.51 0.84 16 16 C 0.09 1.14 4.81 -3.82 -0.02 1.12 16 17 C -0.14 -1.74 4.80 -90.61 -0.43 -2.17 16 18 C -0.19 -1.91 10.18 -26.73 -0.27 -2.18 16 19 C -0.18 -1.86 10.25 -26.73 -0.27 -2.13 16 20 H 0.04 0.56 6.91 -51.93 -0.36 0.20 16 21 H 0.06 0.78 6.42 -51.93 -0.33 0.45 16 22 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 24 H 0.05 1.12 6.26 -51.93 -0.33 0.79 16 25 H 0.03 0.78 6.81 -51.93 -0.35 0.43 16 26 H 0.00 0.11 7.57 -51.93 -0.39 -0.29 16 27 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 28 H 0.06 0.87 7.28 -51.93 -0.38 0.49 16 29 H 0.08 1.24 6.21 -51.93 -0.32 0.91 16 30 H 0.02 0.28 6.46 -51.93 -0.34 -0.06 16 31 H 0.07 0.98 7.93 -51.93 -0.41 0.57 16 32 H 0.03 0.38 6.79 -51.93 -0.35 0.03 16 33 H 0.11 1.58 8.14 -51.93 -0.42 1.16 16 34 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.09 0.88 8.03 -51.93 -0.42 0.46 16 36 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 288.99 15.07 4.36 4.36 Total: -1.00 -31.11 288.99 -8.03 -39.13 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: -6.52 Total: -2.36 kcal Atomic # 6 Polarization: -20.59 SS G_CDS: -0.99 Total: -21.58 kcal Atomic # 7 Polarization: -37.31 SS G_CDS: -0.20 Total: -37.52 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -4.67 Total: 17.97 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -31.11 -8.03 -39.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172494627.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.848 kcal (2) G-P(sol) polarization free energy of solvation -31.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds