Wall clock time and date at job start Sun Mar 29 2020 21:42:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 H 1.08999 * 109.47182 * 2 1
4 4 C 1.53006 * 109.47089 * 119.99729 * 2 1 3
5 5 C 1.53001 * 109.46993 * 185.00107 * 4 2 1
6 6 C 1.50697 * 109.47034 * 180.02562 * 5 4 2
7 7 H 1.08000 * 120.00130 * 359.97438 * 6 5 4
8 8 C 1.37878 * 120.00362 * 179.97438 * 6 5 4
9 9 N 1.31512 * 120.00535 * 179.97438 * 8 6 5
10 10 Si 1.86803 * 119.99604 * 359.97438 * 8 6 5
11 11 H 1.48507 * 109.47019 * 89.99965 * 10 8 6
12 12 H 1.48497 * 109.47216 * 209.99624 * 10 8 6
13 13 H 1.48500 * 109.47318 * 329.99921 * 10 8 6
14 14 N 1.46900 * 109.47205 * 239.99127 * 2 1 3
15 15 C 1.46892 * 111.00324 * 306.05139 * 14 2 1
16 16 C 1.46903 * 110.99412 * 70.00435 * 14 2 1
17 17 C 1.53003 * 109.47061 * 170.00126 * 16 14 2
18 18 C 1.53001 * 117.51964 * 116.28123 * 17 16 14
19 19 C 1.52999 * 60.00190 * 107.47982 * 18 17 16
20 20 H 1.09000 * 109.46860 * 60.00211 * 1 2 3
21 21 H 1.08996 * 109.46804 * 180.02562 * 1 2 3
22 22 H 1.09007 * 109.46982 * 300.00348 * 1 2 3
23 23 H 1.09005 * 109.47083 * 304.99674 * 4 2 1
24 24 H 1.08996 * 109.47477 * 64.99751 * 4 2 1
25 25 H 1.09005 * 109.46852 * 299.99709 * 5 4 2
26 26 H 1.08996 * 109.47299 * 59.99535 * 5 4 2
27 27 H 0.96998 * 120.00119 * 180.02562 * 9 8 6
28 28 H 1.09000 * 109.47291 * 183.95092 * 15 14 2
29 29 H 1.08996 * 109.47225 * 303.95004 * 15 14 2
30 30 H 1.08998 * 109.47457 * 63.94701 * 15 14 2
31 31 H 1.08999 * 109.47623 * 49.99628 * 16 14 2
32 32 H 1.09005 * 109.46959 * 289.99642 * 16 14 2
33 33 H 1.09002 * 115.54973 * 330.57907 * 17 16 14
34 34 H 1.09001 * 117.49733 * 214.97413 * 18 17 16
35 35 H 1.08995 * 117.49577 * 359.97438 * 18 17 16
36 36 H 1.09004 * 117.50150 * 252.51496 * 19 18 17
37 37 H 1.09004 * 117.49681 * 107.48417 * 19 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0400 -0.7212 1.2493
5 6 3.5649 -0.6132 1.3138
6 6 4.0672 -1.3241 2.5439
7 1 3.3688 -1.8045 3.2131
8 6 5.4186 -1.3612 2.8152
9 7 5.8570 -1.9812 3.8890
10 14 6.6267 -0.5310 1.6574
11 1 6.8325 0.8768 2.0830
12 1 7.9235 -1.2536 1.6937
13 1 6.0846 -0.5560 0.2751
14 7 2.0197 -0.6927 -1.1993
15 6 1.4343 -2.0356 -1.3076
16 6 1.7530 0.0970 -2.4090
17 6 2.4885 -0.5260 -3.5972
18 6 1.6391 -1.0775 -4.7441
19 6 2.4306 0.2182 -4.9329
20 1 -0.3633 0.5138 -0.8900
21 1 -0.3633 -1.0276 0.0005
22 1 -0.3633 0.5139 0.8900
23 1 1.6054 -0.2616 2.1371
24 1 1.7517 -1.7714 1.2058
25 1 3.9995 -1.0728 0.4260
26 1 3.8532 0.4370 1.3573
27 1 6.8076 -2.0070 4.0799
28 1 1.8664 -2.5523 -2.1646
29 1 1.6466 -2.5988 -0.3989
30 1 0.3556 -1.9522 -1.4397
31 1 2.1025 1.1187 -2.2604
32 1 0.6814 0.1051 -2.6087
33 1 3.4107 -1.0540 -3.3548
34 1 2.0026 -1.9685 -5.2561
35 1 0.5561 -0.9970 -4.6520
36 1 1.8683 1.1514 -4.9651
37 1 3.3149 0.1796 -5.5691
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001172494627.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:42:02
Heat of formation + Delta-G solvation = 15.715033 kcal
Electronic energy + Delta-G solvation = -14414.928901 eV
Core-core repulsion = 12192.723342 eV
Total energy + Delta-G solvation = -2222.205560 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 211.163 amu
Computer time = 0.23 seconds
Orbital eigenvalues (eV)
-38.80337 -36.69084 -33.30234 -31.57485 -29.40717 -27.50413 -25.51103 -24.18607
-22.41559 -20.88397 -20.10779 -19.06084 -16.53601 -16.27408 -15.43739 -14.68913
-14.24943 -14.01812 -13.62398 -13.19039 -12.78584 -12.49662 -12.25509 -11.79124
-11.70373 -11.54467 -11.43032 -11.37194 -10.95330 -10.84314 -10.48776 -10.18122
-9.89139 -9.73111 -9.61273 -9.40270 -8.97902 -8.40925 -7.86110 -5.92516
-3.88628 3.41022 3.47891 3.57214 3.76038 4.18358 4.58242 4.79215
4.90752 5.04279 5.28930 5.33930 5.43463 5.47455 5.55118 5.57925
5.65165 5.72219 5.78558 5.83796 5.93585 6.03830 6.09070 6.23196
6.25630 6.33380 6.37752 6.56442 6.74996 7.11611 7.44587 7.48008
7.56664 7.75948 7.96398 8.67601 9.13486 9.71869 11.21293
Molecular weight = 211.16amu
Principal moments of inertia in cm(-1)
A = 0.030903 B = 0.008009 C = 0.006892
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 905.854051 B = 3495.176262 C = 4061.558474
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.184 4.184
2 C 0.077 3.923
3 H 0.076 0.924
4 C -0.094 4.094
5 C -0.007 4.007
6 C -0.517 4.517
7 H 0.067 0.933
8 C 0.064 3.936
9 N -0.910 5.910
10 Si 0.878 3.122
11 H -0.280 1.280
12 H -0.291 1.291
13 H -0.260 1.260
14 N -0.524 5.524
15 C 0.023 3.977
16 C 0.085 3.915
17 C -0.141 4.141
18 C -0.185 4.185
19 C -0.181 4.181
20 H 0.045 0.955
21 H 0.057 0.943
22 H 0.059 0.941
23 H 0.054 0.946
24 H 0.055 0.945
25 H 0.031 0.969
26 H 0.004 0.996
27 H 0.261 0.739
28 H 0.062 0.938
29 H 0.076 0.924
30 H 0.021 0.979
31 H 0.073 0.927
32 H 0.030 0.970
33 H 0.113 0.887
34 H 0.091 0.909
35 H 0.089 0.911
36 H 0.090 0.910
37 H 0.092 0.908
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.714 3.849 -15.339 18.559
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.243 4.243
2 C -0.031 4.031
3 H 0.094 0.906
4 C -0.132 4.132
5 C -0.044 4.044
6 C -0.555 4.555
7 H 0.086 0.914
8 C -0.136 4.136
9 N -0.550 5.550
10 Si 0.706 3.294
11 H -0.206 1.206
12 H -0.217 1.217
13 H -0.184 1.184
14 N -0.247 5.247
15 C -0.125 4.125
16 C -0.043 4.043
17 C -0.159 4.159
18 C -0.222 4.222
19 C -0.219 4.219
20 H 0.064 0.936
21 H 0.076 0.924
22 H 0.078 0.922
23 H 0.073 0.927
24 H 0.073 0.927
25 H 0.049 0.951
26 H 0.023 0.977
27 H 0.070 0.930
28 H 0.081 0.919
29 H 0.094 0.906
30 H 0.039 0.961
31 H 0.092 0.908
32 H 0.048 0.952
33 H 0.131 0.869
34 H 0.109 0.891
35 H 0.107 0.893
36 H 0.109 0.891
37 H 0.111 0.889
Dipole moment (debyes) X Y Z Total
from point charges -9.041 3.749 -15.193 18.073
hybrid contribution -0.147 0.486 -0.578 0.770
sum -9.189 4.235 -15.771 18.737
Atomic orbital electron populations
1.22487 0.98616 1.01869 1.01308 1.21925 0.91439 0.98456 0.91270
0.90601 1.21543 0.99127 0.99052 0.93438 1.19479 0.91356 0.96030
0.97543 1.21258 0.92799 1.33944 1.07477 0.91441 1.25022 0.98456
0.95091 0.95055 1.69930 1.14413 1.44119 1.26510 0.86781 0.80367
0.79467 0.82781 1.20610 1.21741 1.18419 1.62106 1.58560 1.02669
1.01390 1.22423 0.96215 0.91039 1.02863 1.21663 0.96480 0.97067
0.89073 1.22353 1.01596 1.03181 0.88805 1.23021 0.98146 0.97475
1.03562 1.22924 1.02663 0.95973 1.00314 0.93601 0.92380 0.92197
0.92735 0.92665 0.95115 0.97743 0.92985 0.91891 0.90566 0.96090
0.90834 0.95163 0.86859 0.89089 0.89268 0.89108 0.88932
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -2.50 8.44 37.16 0.31 -2.19 16
2 C 0.08 1.27 2.31 -67.71 -0.16 1.11 16
3 H 0.08 1.26 7.93 -51.93 -0.41 0.85 16
4 C -0.09 -1.89 4.55 -26.73 -0.12 -2.01 16
5 C -0.01 -0.16 3.93 -27.88 -0.11 -0.27 16
6 C -0.52 -15.19 9.66 -34.44 -0.33 -15.53 16
7 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16
8 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16
9 N -0.91 -28.92 13.96 55.43 0.77 -28.14 16
10 Si 0.88 22.64 27.47 -169.99 -4.67 17.97 16
11 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16
12 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16
13 H -0.26 -6.51 6.54 56.52 0.37 -6.14 16
14 N -0.52 -8.39 4.17 -234.89 -0.98 -9.37 16
15 C 0.02 0.33 8.49 60.06 0.51 0.84 16
16 C 0.09 1.14 4.81 -3.82 -0.02 1.12 16
17 C -0.14 -1.74 4.80 -90.61 -0.43 -2.17 16
18 C -0.19 -1.91 10.18 -26.73 -0.27 -2.18 16
19 C -0.18 -1.86 10.25 -26.73 -0.27 -2.13 16
20 H 0.04 0.56 6.91 -51.93 -0.36 0.20 16
21 H 0.06 0.78 6.42 -51.93 -0.33 0.45 16
22 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16
23 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16
24 H 0.05 1.12 6.26 -51.93 -0.33 0.79 16
25 H 0.03 0.78 6.81 -51.93 -0.35 0.43 16
26 H 0.00 0.11 7.57 -51.93 -0.39 -0.29 16
27 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16
28 H 0.06 0.87 7.28 -51.93 -0.38 0.49 16
29 H 0.08 1.24 6.21 -51.93 -0.32 0.91 16
30 H 0.02 0.28 6.46 -51.93 -0.34 -0.06 16
31 H 0.07 0.98 7.93 -51.93 -0.41 0.57 16
32 H 0.03 0.38 6.79 -51.93 -0.35 0.03 16
33 H 0.11 1.58 8.14 -51.93 -0.42 1.16 16
34 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16
35 H 0.09 0.88 8.03 -51.93 -0.42 0.46 16
36 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16
37 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16
LS Contribution 288.99 15.07 4.36 4.36
Total: -1.00 -31.11 288.99 -8.03 -39.13
By element:
Atomic # 1 Polarization: 4.15 SS G_CDS: -6.52 Total: -2.36 kcal
Atomic # 6 Polarization: -20.59 SS G_CDS: -0.99 Total: -21.58 kcal
Atomic # 7 Polarization: -37.31 SS G_CDS: -0.20 Total: -37.52 kcal
Atomic # 14 Polarization: 22.64 SS G_CDS: -4.67 Total: 17.97 kcal
Total LS contribution 4.36 Total: 4.36 kcal
Total: -31.11 -8.03 -39.13 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001172494627.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 54.848 kcal
(2) G-P(sol) polarization free energy of solvation -31.106 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.743 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.028 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.133 kcal
(6) G-S(sol) free energy of system = (1) + (5) 15.715 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.23 seconds