Wall clock time and date at job start Sun Mar 29 2020 21:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47182 * 2 1 4 4 C 1.53006 * 109.47089 * 119.99729 * 2 1 3 5 5 C 1.53001 * 109.46993 * 185.00107 * 4 2 1 6 6 C 1.50697 * 109.47034 * 180.02562 * 5 4 2 7 7 H 1.08000 * 120.00130 * 359.97438 * 6 5 4 8 8 C 1.37878 * 120.00362 * 179.97438 * 6 5 4 9 9 N 1.31512 * 120.00535 * 179.97438 * 8 6 5 10 10 Si 1.86803 * 119.99604 * 359.97438 * 8 6 5 11 11 H 1.48507 * 109.47019 * 89.99965 * 10 8 6 12 12 H 1.48497 * 109.47216 * 209.99624 * 10 8 6 13 13 H 1.48500 * 109.47318 * 329.99921 * 10 8 6 14 14 N 1.46900 * 109.47205 * 239.99127 * 2 1 3 15 15 C 1.46892 * 111.00324 * 306.05139 * 14 2 1 16 16 C 1.46903 * 110.99412 * 70.00435 * 14 2 1 17 17 C 1.53003 * 109.47061 * 170.00126 * 16 14 2 18 18 C 1.53001 * 117.51964 * 116.28123 * 17 16 14 19 19 C 1.52999 * 60.00190 * 107.47982 * 18 17 16 20 20 H 1.09000 * 109.46860 * 60.00211 * 1 2 3 21 21 H 1.08996 * 109.46804 * 180.02562 * 1 2 3 22 22 H 1.09007 * 109.46982 * 300.00348 * 1 2 3 23 23 H 1.09005 * 109.47083 * 304.99674 * 4 2 1 24 24 H 1.08996 * 109.47477 * 64.99751 * 4 2 1 25 25 H 1.09005 * 109.46852 * 299.99709 * 5 4 2 26 26 H 1.08996 * 109.47299 * 59.99535 * 5 4 2 27 27 H 0.96998 * 120.00119 * 180.02562 * 9 8 6 28 28 H 1.09000 * 109.47291 * 183.95092 * 15 14 2 29 29 H 1.08996 * 109.47225 * 303.95004 * 15 14 2 30 30 H 1.08998 * 109.47457 * 63.94701 * 15 14 2 31 31 H 1.08999 * 109.47623 * 49.99628 * 16 14 2 32 32 H 1.09005 * 109.46959 * 289.99642 * 16 14 2 33 33 H 1.09002 * 115.54973 * 330.57907 * 17 16 14 34 34 H 1.09001 * 117.49733 * 214.97413 * 18 17 16 35 35 H 1.08995 * 117.49577 * 359.97438 * 18 17 16 36 36 H 1.09004 * 117.50150 * 252.51496 * 19 18 17 37 37 H 1.09004 * 117.49681 * 107.48417 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5649 -0.6132 1.3138 6 6 4.0672 -1.3241 2.5439 7 1 3.3688 -1.8045 3.2131 8 6 5.4186 -1.3612 2.8152 9 7 5.8570 -1.9812 3.8890 10 14 6.6267 -0.5310 1.6574 11 1 6.8325 0.8768 2.0830 12 1 7.9235 -1.2536 1.6937 13 1 6.0846 -0.5560 0.2751 14 7 2.0197 -0.6927 -1.1993 15 6 1.4343 -2.0356 -1.3076 16 6 1.7530 0.0970 -2.4090 17 6 2.4885 -0.5260 -3.5972 18 6 1.6391 -1.0775 -4.7441 19 6 2.4306 0.2182 -4.9329 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 1.6054 -0.2616 2.1371 24 1 1.7517 -1.7714 1.2058 25 1 3.9995 -1.0728 0.4260 26 1 3.8532 0.4370 1.3573 27 1 6.8076 -2.0070 4.0799 28 1 1.8664 -2.5523 -2.1646 29 1 1.6466 -2.5988 -0.3989 30 1 0.3556 -1.9522 -1.4397 31 1 2.1025 1.1187 -2.2604 32 1 0.6814 0.1051 -2.6087 33 1 3.4107 -1.0540 -3.3548 34 1 2.0026 -1.9685 -5.2561 35 1 0.5561 -0.9970 -4.6520 36 1 1.8683 1.1514 -4.9651 37 1 3.3149 0.1796 -5.5691 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172494627.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:02 Heat of formation + Delta-G solvation = -3.284074 kcal Electronic energy + Delta-G solvation = -14415.752764 eV Core-core repulsion = 12192.723342 eV Total energy + Delta-G solvation = -2223.029423 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.94561 -37.71870 -35.31654 -33.36741 -30.96155 -28.59668 -27.19388 -25.51510 -23.18842 -22.70003 -21.18324 -20.45153 -18.77492 -17.40965 -16.49943 -16.31883 -15.76822 -15.29764 -14.72011 -14.62051 -14.45978 -14.15483 -13.70992 -13.30555 -13.00947 -12.86308 -12.67435 -12.49088 -12.32044 -12.10029 -11.97335 -11.67181 -11.40322 -11.34409 -11.23640 -10.95045 -10.75850 -10.71616 -9.03160 -8.26184 -6.28160 1.36239 1.38871 1.53967 2.39887 2.88324 3.10012 3.11855 3.89004 4.00467 4.08117 4.17198 4.23112 4.36977 4.48601 4.49930 4.63845 4.72083 4.79677 4.82055 4.87913 4.91835 4.97773 5.06103 5.06158 5.13527 5.26115 5.29127 5.36283 5.40553 5.60602 5.70921 5.77072 6.29057 6.34744 6.36439 6.80437 7.36377 8.90912 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.030903 B = 0.008009 C = 0.006892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.854051 B = 3495.176262 C = 4061.558474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.084 3.916 3 H 0.076 0.924 4 C -0.088 4.088 5 C 0.002 3.998 6 C -0.529 4.529 7 H 0.028 0.972 8 C 0.002 3.998 9 N -0.955 5.955 10 Si 0.950 3.050 11 H -0.268 1.268 12 H -0.285 1.285 13 H -0.248 1.248 14 N -0.548 5.548 15 C 0.028 3.972 16 C 0.090 3.910 17 C -0.162 4.162 18 C -0.175 4.175 19 C -0.170 4.170 20 H 0.065 0.935 21 H 0.058 0.942 22 H 0.064 0.936 23 H 0.050 0.950 24 H 0.047 0.953 25 H 0.025 0.975 26 H 0.007 0.993 27 H 0.264 0.736 28 H 0.069 0.931 29 H 0.052 0.948 30 H 0.038 0.962 31 H 0.071 0.929 32 H 0.044 0.956 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.102 0.898 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.354 5.141 -17.809 21.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.025 4.025 3 H 0.094 0.906 4 C -0.126 4.126 5 C -0.035 4.035 6 C -0.567 4.567 7 H 0.047 0.953 8 C -0.193 4.193 9 N -0.597 5.597 10 Si 0.774 3.226 11 H -0.193 1.193 12 H -0.211 1.211 13 H -0.171 1.171 14 N -0.272 5.272 15 C -0.120 4.120 16 C -0.037 4.037 17 C -0.181 4.181 18 C -0.212 4.212 19 C -0.208 4.208 20 H 0.084 0.916 21 H 0.077 0.923 22 H 0.083 0.917 23 H 0.069 0.931 24 H 0.066 0.934 25 H 0.043 0.957 26 H 0.025 0.975 27 H 0.073 0.927 28 H 0.088 0.912 29 H 0.071 0.929 30 H 0.057 0.943 31 H 0.090 0.910 32 H 0.062 0.938 33 H 0.110 0.890 34 H 0.115 0.885 35 H 0.116 0.884 36 H 0.120 0.880 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -9.702 5.044 -17.673 20.782 hybrid contribution 0.022 0.023 0.247 0.249 sum -9.680 5.068 -17.426 20.568 Atomic orbital electron populations 1.22368 0.96084 1.02315 1.02558 1.21727 0.93389 0.97617 0.89727 0.90580 1.21422 0.96102 0.99355 0.95753 1.19354 0.94398 0.95063 0.94706 1.21637 0.92558 1.33900 1.08578 0.95324 1.25995 1.00677 0.95845 0.96829 1.70078 1.15131 1.45840 1.28638 0.85648 0.77580 0.78652 0.80721 1.19312 1.21123 1.17139 1.62041 1.59516 1.03398 1.02223 1.22347 0.97326 0.90412 1.01930 1.21651 0.97392 0.96540 0.88120 1.22224 1.01436 1.04917 0.89494 1.23081 0.98451 0.97834 1.01791 1.23011 1.02954 0.96419 0.98381 0.91623 0.92321 0.91668 0.93131 0.93396 0.95661 0.97501 0.92680 0.91234 0.92878 0.94314 0.91016 0.93761 0.89014 0.88532 0.88374 0.87999 0.88281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.29 8.44 71.98 0.61 -3.69 16 2 C 0.08 2.62 2.31 44.92 0.10 2.72 16 3 H 0.08 2.38 7.93 -2.39 -0.02 2.36 16 4 C -0.09 -3.56 4.55 30.60 0.14 -3.42 16 5 C 0.00 0.11 3.93 29.85 0.12 0.23 16 6 C -0.53 -31.90 9.66 25.60 0.25 -31.65 16 7 H 0.03 1.88 7.99 -2.91 -0.02 1.86 16 8 C 0.00 0.15 5.47 84.66 0.46 0.61 16 9 N -0.96 -62.11 13.96 21.45 0.30 -61.81 16 10 Si 0.95 46.78 27.47 68.60 1.88 48.67 16 11 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 12 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 13 H -0.25 -11.62 6.54 99.48 0.65 -10.97 16 14 N -0.55 -16.67 4.17 -897.04 -3.74 -20.40 16 15 C 0.03 0.78 8.49 127.69 1.08 1.86 16 16 C 0.09 2.19 4.81 86.30 0.42 2.61 16 17 C -0.16 -3.66 4.80 -10.79 -0.05 -3.71 16 18 C -0.17 -3.10 10.18 30.59 0.31 -2.79 16 19 C -0.17 -3.00 10.25 30.60 0.31 -2.68 16 20 H 0.06 1.38 6.91 -2.39 -0.02 1.36 16 21 H 0.06 1.44 6.42 -2.39 -0.02 1.42 16 22 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 23 H 0.05 2.03 8.14 -2.38 -0.02 2.01 16 24 H 0.05 1.97 6.26 -2.39 -0.01 1.96 16 25 H 0.03 1.27 6.81 -2.38 -0.02 1.25 16 26 H 0.01 0.33 7.57 -2.39 -0.02 0.31 16 27 H 0.26 16.02 8.31 -92.71 -0.77 15.25 16 28 H 0.07 1.83 7.28 -2.39 -0.02 1.81 16 29 H 0.05 1.72 6.21 -2.39 -0.01 1.70 16 30 H 0.04 0.94 6.46 -2.39 -0.02 0.92 16 31 H 0.07 1.74 7.93 -2.39 -0.02 1.72 16 32 H 0.04 0.95 6.79 -2.38 -0.02 0.93 16 33 H 0.09 2.47 8.14 -2.39 -0.02 2.46 16 34 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.10 1.58 8.03 -2.39 -0.02 1.56 16 36 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.10 1.61 8.14 -2.38 -0.02 1.59 16 Total: -1.00 -67.35 288.99 3.15 -64.20 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: 0.95 Total: 9.26 kcal Atomic # 6 Polarization: -43.66 SS G_CDS: 3.75 Total: -39.91 kcal Atomic # 7 Polarization: -78.78 SS G_CDS: -3.44 Total: -82.21 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 1.88 Total: 48.67 kcal Total: -67.35 3.15 -64.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172494627.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.913 kcal (2) G-P(sol) polarization free energy of solvation -67.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds