Wall clock time and date at job start Sun Mar 29 2020 21:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46897 * 109.47115 * 2 1 4 4 C 1.46906 * 111.00026 * 163.80965 * 3 2 1 5 5 H 1.09007 * 109.46916 * 309.47352 * 4 3 2 6 6 C 1.52998 * 109.47092 * 69.46855 * 4 3 2 7 7 C 1.52994 * 109.47269 * 189.47348 * 4 3 2 8 8 C 1.53002 * 109.47084 * 64.99663 * 7 4 3 9 9 C 1.50708 * 109.46981 * 179.97438 * 8 7 4 10 10 H 1.07997 * 120.00095 * 0.02562 * 9 8 7 11 11 C 1.37874 * 119.99554 * 179.72494 * 9 8 7 12 12 N 1.31514 * 120.00639 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99608 * 180.02562 * 11 9 8 14 14 H 1.48505 * 109.47337 * 0.02562 * 13 11 9 15 15 H 1.48505 * 109.47202 * 119.99714 * 13 11 9 16 16 H 1.48495 * 109.47334 * 240.00114 * 13 11 9 17 17 C 1.46899 * 111.00023 * 287.75889 * 3 2 1 18 18 C 1.53001 * 117.49792 * 139.20417 * 17 3 2 19 19 C 1.52998 * 60.00004 * 252.51379 * 18 17 3 20 20 H 1.09003 * 109.47336 * 187.53538 * 1 2 3 21 21 H 1.08998 * 109.47196 * 307.53746 * 1 2 3 22 22 H 1.09003 * 109.46858 * 67.53485 * 1 2 3 23 23 H 1.09004 * 109.47112 * 239.99733 * 2 1 3 24 24 H 1.09003 * 109.47241 * 119.99961 * 2 1 3 25 25 H 1.09003 * 109.46774 * 63.83837 * 6 4 3 26 26 H 1.09003 * 109.47035 * 183.83220 * 6 4 3 27 27 H 1.08992 * 109.47570 * 303.83253 * 6 4 3 28 28 H 1.09000 * 109.47296 * 304.99452 * 7 4 3 29 29 H 1.08996 * 109.47507 * 184.99626 * 7 4 3 30 30 H 1.09001 * 109.46742 * 60.00345 * 8 7 4 31 31 H 1.08994 * 109.47324 * 299.99977 * 8 7 4 32 32 H 0.96996 * 119.99940 * 179.97438 * 12 11 9 33 33 H 1.08994 * 115.55300 * 284.91109 * 17 3 2 34 34 H 1.09002 * 117.49769 * 0.02562 * 18 17 3 35 35 H 1.09004 * 117.49866 * 145.02188 * 18 17 3 36 36 H 1.09004 * 117.49633 * 252.51203 * 19 18 17 37 37 H 1.09000 * 117.50080 * 107.48954 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4369 1.4423 0.3824 5 1 3.5875 0.8802 1.3041 6 6 4.2907 0.8333 -0.7316 7 6 3.8476 2.8998 0.6010 8 6 3.0824 3.4715 1.7962 9 6 3.4874 4.9070 2.0119 10 1 4.2173 5.3658 1.3613 11 6 2.9216 5.6365 3.0359 12 7 2.0288 5.0795 3.8248 13 14 3.4231 7.4160 3.3028 14 1 4.4361 7.8024 2.2879 15 1 2.2310 8.2915 3.1699 16 1 4.0006 7.5690 4.6623 17 6 1.8007 2.0207 -1.3061 18 6 1.3249 3.4749 -1.3130 19 6 0.3593 2.3521 -1.6977 20 1 -0.3634 -1.0188 0.1348 21 1 -0.3633 0.6261 0.8149 22 1 -0.3633 0.3927 -0.9497 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 4.1928 1.4356 -1.6348 26 1 5.3350 0.8137 -0.4195 27 1 3.9529 -0.1830 -0.9340 28 1 3.6145 3.4807 -0.2913 29 1 4.9185 2.9500 0.7976 30 1 3.3156 2.8906 2.6885 31 1 2.0115 3.4214 1.5996 32 1 1.6311 5.5927 4.5455 33 1 2.4791 1.7091 -2.1003 34 1 1.1747 3.9599 -0.3485 35 1 1.6903 4.1202 -2.1119 36 1 0.0895 2.2588 -2.7496 37 1 -0.4265 2.0984 -0.9862 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172494673.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:22 Heat of formation + Delta-G solvation = 17.075834 kcal Electronic energy + Delta-G solvation = -14802.858204 eV Core-core repulsion = 12580.711653 eV Total energy + Delta-G solvation = -2222.146551 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.90835 -34.87488 -33.41165 -32.15591 -29.55346 -27.88394 -25.07253 -22.50813 -21.96694 -21.83005 -20.42281 -18.64129 -16.15366 -15.74361 -15.28481 -14.68083 -14.38249 -13.53162 -13.21195 -12.81588 -12.72192 -12.40302 -12.07544 -11.84002 -11.48270 -11.29598 -11.04138 -10.90160 -10.76043 -10.64030 -10.39849 -10.07762 -9.79712 -9.59348 -9.46532 -9.12298 -8.82844 -8.20728 -7.71369 -5.85924 -3.86847 3.37428 3.44902 3.48878 4.21747 4.24613 4.56168 5.26379 5.32326 5.39906 5.42697 5.49420 5.54861 5.57666 5.71135 5.77122 5.87000 5.92445 5.99140 6.11114 6.19096 6.30274 6.37373 6.43850 6.51536 6.55641 6.74655 6.84233 7.00248 7.37310 7.64073 7.70608 7.89238 8.12142 8.26773 8.61124 9.22595 9.75726 11.24990 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.034315 B = 0.008267 C = 0.007953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.768874 B = 3386.015422 C = 3519.786355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.056 3.944 3 N -0.493 5.493 4 C 0.084 3.916 5 H 0.075 0.925 6 C -0.183 4.183 7 C -0.102 4.102 8 C 0.031 3.969 9 C -0.515 4.515 10 H 0.050 0.950 11 C 0.056 3.944 12 N -0.894 5.894 13 Si 0.884 3.116 14 H -0.274 1.274 15 H -0.285 1.285 16 H -0.286 1.286 17 C 0.009 3.991 18 C -0.156 4.156 19 C -0.185 4.185 20 H 0.048 0.952 21 H 0.065 0.935 22 H 0.062 0.938 23 H 0.026 0.974 24 H 0.067 0.933 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.045 0.955 28 H 0.053 0.947 29 H 0.044 0.956 30 H 0.006 0.994 31 H 0.032 0.968 32 H 0.257 0.743 33 H 0.080 0.920 34 H 0.115 0.885 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.211 -8.774 -9.970 13.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.072 4.072 3 N -0.217 5.217 4 C -0.024 4.024 5 H 0.093 0.907 6 C -0.242 4.242 7 C -0.140 4.140 8 C -0.006 4.006 9 C -0.554 4.554 10 H 0.069 0.931 11 C -0.144 4.144 12 N -0.534 5.534 13 Si 0.713 3.287 14 H -0.199 1.199 15 H -0.212 1.212 16 H -0.212 1.212 17 C -0.100 4.100 18 C -0.194 4.194 19 C -0.222 4.222 20 H 0.067 0.933 21 H 0.084 0.916 22 H 0.081 0.919 23 H 0.044 0.956 24 H 0.086 0.914 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.063 0.937 30 H 0.025 0.975 31 H 0.050 0.950 32 H 0.067 0.933 33 H 0.097 0.903 34 H 0.133 0.867 35 H 0.104 0.896 36 H 0.102 0.898 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.589 -8.482 -9.461 12.805 hybrid contribution 0.787 0.527 -0.356 1.011 sum -0.802 -7.955 -9.817 12.661 Atomic orbital electron populations 1.22030 0.95513 1.00812 1.02878 1.21973 0.95890 0.89576 0.99781 1.61975 1.18262 1.15553 1.25867 1.21871 0.85095 0.99163 0.96238 0.90651 1.22495 1.00986 0.99999 1.00714 1.21688 0.99038 0.91811 1.01414 1.18997 0.96427 0.94087 0.91079 1.21380 1.23102 0.97427 1.13463 0.93125 1.24990 0.95303 0.97841 0.96284 1.69990 1.28506 1.36302 1.18607 0.86661 0.78321 0.85860 0.77873 1.19910 1.21176 1.21210 1.22250 0.96768 0.99221 0.91769 1.23106 1.01746 0.90680 1.03845 1.23201 0.93367 1.04840 1.00804 0.93331 0.91622 0.91945 0.95574 0.91432 0.92639 0.92460 0.93606 0.92870 0.93696 0.97537 0.94976 0.93346 0.90264 0.86654 0.89636 0.89782 0.87837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 8.88 37.16 0.33 -1.71 16 2 C 0.06 0.80 5.10 -3.83 -0.02 0.78 16 3 N -0.49 -8.42 4.01 -218.72 -0.88 -9.30 16 4 C 0.08 1.49 2.30 -67.71 -0.16 1.33 16 5 H 0.08 1.38 7.87 -51.93 -0.41 0.97 16 6 C -0.18 -2.67 8.52 37.16 0.32 -2.35 16 7 C -0.10 -2.15 4.43 -26.73 -0.12 -2.27 16 8 C 0.03 0.82 4.86 -27.88 -0.14 0.68 16 9 C -0.52 -14.86 9.11 -34.44 -0.31 -15.17 16 10 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 11 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 12 N -0.89 -27.45 13.29 55.43 0.74 -26.72 16 13 Si 0.88 22.13 29.54 -169.99 -5.02 17.11 16 14 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 15 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 16 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 17 C 0.01 0.14 3.75 -67.71 -0.25 -0.12 16 18 C -0.16 -2.61 9.05 -26.73 -0.24 -2.85 16 19 C -0.18 -2.63 8.59 -26.73 -0.23 -2.86 16 20 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 21 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 22 H 0.06 0.78 5.25 -51.93 -0.27 0.51 16 23 H 0.03 0.35 7.20 -51.93 -0.37 -0.02 16 24 H 0.07 0.97 7.81 -51.93 -0.41 0.56 16 25 H 0.05 0.80 6.38 -51.93 -0.33 0.47 16 26 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.04 0.61 6.89 -51.93 -0.36 0.25 16 28 H 0.05 1.12 6.21 -51.93 -0.32 0.80 16 29 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.03 0.90 6.95 -51.93 -0.36 0.54 16 32 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 33 H 0.08 1.19 6.19 -51.93 -0.32 0.87 16 34 H 0.12 2.36 7.34 -51.93 -0.38 1.98 16 35 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.10 1.52 6.02 -51.93 -0.31 1.20 16 LS Contribution 285.36 15.07 4.30 4.30 Total: -1.00 -30.10 285.36 -8.13 -38.23 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -6.35 Total: -0.64 kcal Atomic # 6 Polarization: -22.06 SS G_CDS: -0.92 Total: -22.98 kcal Atomic # 7 Polarization: -35.87 SS G_CDS: -0.14 Total: -36.01 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -30.10 -8.13 -38.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172494673.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.304 kcal (2) G-P(sol) polarization free energy of solvation -30.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds