Wall clock time and date at job start Sun Mar 29 2020 21:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46897 * 109.47115 * 2 1 4 4 C 1.46906 * 111.00026 * 163.80965 * 3 2 1 5 5 H 1.09007 * 109.46916 * 309.47352 * 4 3 2 6 6 C 1.52998 * 109.47092 * 69.46855 * 4 3 2 7 7 C 1.52994 * 109.47269 * 189.47348 * 4 3 2 8 8 C 1.53002 * 109.47084 * 64.99663 * 7 4 3 9 9 C 1.50708 * 109.46981 * 179.97438 * 8 7 4 10 10 H 1.07997 * 120.00095 * 0.02562 * 9 8 7 11 11 C 1.37874 * 119.99554 * 179.72494 * 9 8 7 12 12 N 1.31514 * 120.00639 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99608 * 180.02562 * 11 9 8 14 14 H 1.48505 * 109.47337 * 0.02562 * 13 11 9 15 15 H 1.48505 * 109.47202 * 119.99714 * 13 11 9 16 16 H 1.48495 * 109.47334 * 240.00114 * 13 11 9 17 17 C 1.46899 * 111.00023 * 287.75889 * 3 2 1 18 18 C 1.53001 * 117.49792 * 139.20417 * 17 3 2 19 19 C 1.52998 * 60.00004 * 252.51379 * 18 17 3 20 20 H 1.09003 * 109.47336 * 187.53538 * 1 2 3 21 21 H 1.08998 * 109.47196 * 307.53746 * 1 2 3 22 22 H 1.09003 * 109.46858 * 67.53485 * 1 2 3 23 23 H 1.09004 * 109.47112 * 239.99733 * 2 1 3 24 24 H 1.09003 * 109.47241 * 119.99961 * 2 1 3 25 25 H 1.09003 * 109.46774 * 63.83837 * 6 4 3 26 26 H 1.09003 * 109.47035 * 183.83220 * 6 4 3 27 27 H 1.08992 * 109.47570 * 303.83253 * 6 4 3 28 28 H 1.09000 * 109.47296 * 304.99452 * 7 4 3 29 29 H 1.08996 * 109.47507 * 184.99626 * 7 4 3 30 30 H 1.09001 * 109.46742 * 60.00345 * 8 7 4 31 31 H 1.08994 * 109.47324 * 299.99977 * 8 7 4 32 32 H 0.96996 * 119.99940 * 179.97438 * 12 11 9 33 33 H 1.08994 * 115.55300 * 284.91109 * 17 3 2 34 34 H 1.09002 * 117.49769 * 0.02562 * 18 17 3 35 35 H 1.09004 * 117.49866 * 145.02188 * 18 17 3 36 36 H 1.09004 * 117.49633 * 252.51203 * 19 18 17 37 37 H 1.09000 * 117.50080 * 107.48954 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4369 1.4423 0.3824 5 1 3.5875 0.8802 1.3041 6 6 4.2907 0.8333 -0.7316 7 6 3.8476 2.8998 0.6010 8 6 3.0824 3.4715 1.7962 9 6 3.4874 4.9070 2.0119 10 1 4.2173 5.3658 1.3613 11 6 2.9216 5.6365 3.0359 12 7 2.0288 5.0795 3.8248 13 14 3.4231 7.4160 3.3028 14 1 4.4361 7.8024 2.2879 15 1 2.2310 8.2915 3.1699 16 1 4.0006 7.5690 4.6623 17 6 1.8007 2.0207 -1.3061 18 6 1.3249 3.4749 -1.3130 19 6 0.3593 2.3521 -1.6977 20 1 -0.3634 -1.0188 0.1348 21 1 -0.3633 0.6261 0.8149 22 1 -0.3633 0.3927 -0.9497 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 4.1928 1.4356 -1.6348 26 1 5.3350 0.8137 -0.4195 27 1 3.9529 -0.1830 -0.9340 28 1 3.6145 3.4807 -0.2913 29 1 4.9185 2.9500 0.7976 30 1 3.3156 2.8906 2.6885 31 1 2.0115 3.4214 1.5996 32 1 1.6311 5.5927 4.5455 33 1 2.4791 1.7091 -2.1003 34 1 1.1747 3.9599 -0.3485 35 1 1.6903 4.1202 -2.1119 36 1 0.0895 2.2588 -2.7496 37 1 -0.4265 2.0984 -0.9862 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172494673.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:22 Heat of formation + Delta-G solvation = -0.820962 kcal Electronic energy + Delta-G solvation = -14803.634267 eV Core-core repulsion = 12580.711653 eV Total energy + Delta-G solvation = -2222.922614 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.21302 -36.33685 -35.22698 -33.79193 -31.32851 -29.12566 -27.03270 -23.71568 -23.58275 -23.12616 -22.08762 -20.02615 -18.36476 -17.08549 -16.61836 -16.44732 -15.90373 -14.87842 -14.61665 -14.47559 -14.15304 -13.87493 -13.62007 -13.20332 -13.09065 -12.88948 -12.70050 -12.50506 -12.28972 -12.08024 -11.79624 -11.69164 -11.48250 -11.22729 -10.94256 -10.84468 -10.74820 -10.47569 -8.97909 -8.12582 -6.22511 1.39151 1.39434 1.52471 2.43725 2.96721 3.02059 3.19713 3.98653 4.15430 4.16939 4.22631 4.27328 4.36376 4.50588 4.63860 4.71280 4.73764 4.82481 4.85693 4.91976 5.03182 5.04799 5.13552 5.19989 5.27509 5.35529 5.42626 5.45937 5.52289 5.62703 5.93181 6.06069 6.35390 6.39072 6.45621 6.97437 7.45317 8.98827 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.034315 B = 0.008267 C = 0.007953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.768874 B = 3386.015422 C = 3519.786355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.055 3.945 3 N -0.521 5.521 4 C 0.088 3.912 5 H 0.062 0.938 6 C -0.171 4.171 7 C -0.090 4.090 8 C 0.044 3.956 9 C -0.536 4.536 10 H 0.053 0.947 11 C -0.001 4.001 12 N -0.932 5.932 13 Si 0.958 3.042 14 H -0.263 1.263 15 H -0.279 1.279 16 H -0.279 1.279 17 C 0.009 3.991 18 C -0.178 4.178 19 C -0.160 4.160 20 H 0.071 0.929 21 H 0.038 0.962 22 H 0.071 0.929 23 H 0.047 0.953 24 H 0.063 0.937 25 H 0.060 0.940 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.054 0.946 29 H 0.045 0.955 30 H -0.028 1.028 31 H 0.005 0.995 32 H 0.260 0.740 33 H 0.098 0.902 34 H 0.067 0.933 35 H 0.100 0.900 36 H 0.117 0.883 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.754 -9.172 -11.800 14.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.072 4.072 3 N -0.246 5.246 4 C -0.020 4.020 5 H 0.081 0.919 6 C -0.230 4.230 7 C -0.127 4.127 8 C 0.007 3.993 9 C -0.574 4.574 10 H 0.071 0.929 11 C -0.198 4.198 12 N -0.573 5.573 13 Si 0.783 3.217 14 H -0.187 1.187 15 H -0.205 1.205 16 H -0.205 1.205 17 C -0.100 4.100 18 C -0.216 4.216 19 C -0.197 4.197 20 H 0.090 0.910 21 H 0.057 0.943 22 H 0.090 0.910 23 H 0.065 0.935 24 H 0.081 0.919 25 H 0.079 0.921 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.072 0.928 29 H 0.064 0.936 30 H -0.009 1.009 31 H 0.023 0.977 32 H 0.069 0.931 33 H 0.116 0.884 34 H 0.085 0.915 35 H 0.118 0.882 36 H 0.135 0.865 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.127 -8.890 -11.301 14.422 hybrid contribution 0.602 0.637 0.250 0.911 sum -0.524 -8.253 -11.051 13.803 Atomic orbital electron populations 1.21987 0.94687 1.01750 1.02276 1.22033 0.96530 0.88119 1.00507 1.61875 1.17916 1.17572 1.27224 1.21673 0.86555 0.96473 0.97347 0.91928 1.22346 1.00617 1.00746 0.99248 1.21488 0.98122 0.94314 0.98822 1.18781 0.95454 0.93167 0.91886 1.21794 1.23206 0.98745 1.13694 0.92862 1.25921 0.95145 1.02813 0.95918 1.70131 1.29638 1.38330 1.19222 0.85506 0.78266 0.79794 0.78118 1.18706 1.20513 1.20475 1.22350 0.98211 0.97840 0.91569 1.22948 1.04817 0.91717 1.02110 1.23259 0.92272 1.01763 1.02402 0.91018 0.94278 0.91047 0.93521 0.91855 0.92101 0.91727 0.91676 0.92777 0.93649 1.00925 0.97677 0.93118 0.88433 0.91476 0.88175 0.86471 0.88580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.74 8.88 71.98 0.64 -3.10 16 2 C 0.06 1.51 5.10 86.30 0.44 1.95 16 3 N -0.52 -17.61 4.01 -845.90 -3.39 -21.01 16 4 C 0.09 3.07 2.30 44.91 0.10 3.17 16 5 H 0.06 2.32 7.87 -2.38 -0.02 2.30 16 6 C -0.17 -4.54 8.52 71.98 0.61 -3.93 16 7 C -0.09 -3.85 4.43 30.59 0.14 -3.71 16 8 C 0.04 2.44 4.86 29.85 0.15 2.58 16 9 C -0.54 -31.75 9.11 25.60 0.23 -31.51 16 10 H 0.05 3.05 7.74 -2.91 -0.02 3.03 16 11 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 12 N -0.93 -58.94 13.29 21.45 0.28 -58.66 16 13 Si 0.96 45.90 29.54 68.60 2.03 47.93 16 14 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 15 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 16 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 17 C 0.01 0.26 3.75 44.92 0.17 0.43 16 18 C -0.18 -5.96 9.05 30.59 0.28 -5.68 16 19 C -0.16 -4.26 8.59 30.59 0.26 -4.00 16 20 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 21 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 22 H 0.07 1.63 5.25 -2.39 -0.01 1.62 16 23 H 0.05 1.10 7.20 -2.38 -0.02 1.08 16 24 H 0.06 1.76 7.81 -2.39 -0.02 1.74 16 25 H 0.06 1.56 6.38 -2.39 -0.02 1.55 16 26 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.06 1.50 6.89 -2.39 -0.02 1.48 16 28 H 0.05 2.29 6.21 -2.39 -0.01 2.28 16 29 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 30 H -0.03 -1.69 8.14 -2.39 -0.02 -1.70 16 31 H 0.00 0.29 6.95 -2.39 -0.02 0.28 16 32 H 0.26 15.43 8.31 -92.71 -0.77 14.65 16 33 H 0.10 2.60 6.19 -2.39 -0.01 2.58 16 34 H 0.07 2.91 7.34 -2.39 -0.02 2.90 16 35 H 0.10 2.97 8.14 -2.39 -0.02 2.95 16 36 H 0.12 2.38 8.14 -2.38 -0.02 2.36 16 37 H 0.10 2.72 6.02 -2.39 -0.01 2.70 16 Total: -1.00 -66.62 285.36 3.41 -63.20 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: 1.01 Total: 11.91 kcal Atomic # 6 Polarization: -46.86 SS G_CDS: 3.48 Total: -43.38 kcal Atomic # 7 Polarization: -76.55 SS G_CDS: -3.11 Total: -79.66 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Total: -66.62 3.41 -63.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172494673.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.382 kcal (2) G-P(sol) polarization free energy of solvation -66.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds