Wall clock time and date at job start Sun Mar 29 2020 21:29:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47329 * 2 1 4 4 N 1.46896 * 109.47200 * 180.02562 * 3 2 1 5 5 C 1.46903 * 111.00418 * 179.97438 * 4 3 2 6 6 C 1.52998 * 109.47667 * 205.00504 * 5 4 3 7 7 C 1.52997 * 109.47232 * 180.02562 * 6 5 4 8 8 C 1.52992 * 109.47296 * 59.99748 * 7 6 5 9 9 C 1.50700 * 109.47257 * 59.99902 * 8 7 6 10 10 H 1.07999 * 119.99988 * 359.97438 * 9 8 7 11 11 C 1.37885 * 120.00047 * 180.02562 * 9 8 7 12 12 N 1.31518 * 119.99792 * 359.72305 * 11 9 8 13 13 Si 1.86795 * 120.00009 * 180.02562 * 11 9 8 14 14 H 1.48508 * 109.47021 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47081 * 119.99727 * 13 11 9 16 16 H 1.48501 * 109.47213 * 240.00099 * 13 11 9 17 17 C 1.53003 * 109.47195 * 299.99941 * 8 7 6 18 18 C 1.52994 * 109.46903 * 84.99606 * 5 4 3 19 19 H 1.08996 * 109.46841 * 59.99842 * 1 2 3 20 20 H 1.09000 * 109.47048 * 180.02562 * 1 2 3 21 21 H 1.09003 * 109.46678 * 299.99668 * 1 2 3 22 22 H 1.09009 * 109.46911 * 239.99930 * 2 1 3 23 23 H 1.09002 * 109.47057 * 120.00530 * 2 1 3 24 24 H 1.08995 * 109.46990 * 60.00195 * 3 2 1 25 25 H 1.09002 * 109.47484 * 300.00269 * 3 2 1 26 26 H 1.00896 * 111.00418 * 303.95553 * 4 3 2 27 27 H 1.09005 * 109.46638 * 325.00521 * 5 4 3 28 28 H 1.08998 * 109.46987 * 59.99359 * 6 5 4 29 29 H 1.09005 * 109.46648 * 300.00005 * 6 5 4 30 30 H 1.08996 * 109.46678 * 299.99615 * 7 6 5 31 31 H 1.09004 * 109.46869 * 179.97438 * 7 6 5 32 32 H 1.08997 * 109.47279 * 180.02562 * 8 7 6 33 33 H 0.97000 * 119.99468 * 179.97438 * 12 11 9 34 34 H 1.08998 * 109.47453 * 180.02562 * 17 8 7 35 35 H 1.08996 * 109.47248 * 300.00419 * 17 8 7 36 36 H 1.08999 * 109.47824 * 300.01002 * 18 5 4 37 37 H 1.09005 * 109.46726 * 60.00969 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5090 1.4424 -0.0006 5 6 4.0356 2.8138 -0.0013 6 6 5.4386 2.8213 -0.6116 7 6 5.9872 4.2495 -0.6116 8 6 6.0533 4.7705 0.8254 9 6 6.9600 3.8841 1.6398 10 1 7.4407 3.0340 1.1787 11 6 7.1752 4.1579 2.9740 12 7 6.5934 5.1958 3.5344 13 14 8.2996 3.0597 3.9833 14 1 8.8315 1.9720 3.1234 15 1 9.4271 3.8642 4.5187 16 1 7.5337 2.4693 5.1103 17 6 4.6503 4.7631 1.4357 18 6 4.1015 3.3354 1.4355 19 1 -0.3633 0.5138 -0.8899 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8901 22 1 1.8933 -0.5139 -0.8901 23 1 1.8933 -0.5139 0.8900 24 1 1.6768 1.9562 0.8900 25 1 1.6767 1.9564 -0.8900 26 1 3.8710 0.9162 0.7804 27 1 3.3796 3.4546 -0.5906 28 1 5.3915 2.4496 -1.6351 29 1 6.0945 2.1805 -0.0222 30 1 5.3313 4.8905 -1.2006 31 1 6.9869 4.2547 -1.0460 32 1 6.4437 5.7881 0.8253 33 1 6.7444 5.3881 4.4730 34 1 4.6973 5.1347 2.4593 35 1 3.9945 5.4041 0.8466 36 1 3.1021 3.3301 1.8704 37 1 4.7576 2.6946 2.0249 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173324864.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:22 Heat of formation + Delta-G solvation = -35.795261 kcal Electronic energy + Delta-G solvation = -14686.673665 eV Core-core repulsion = 12462.234452 eV Total energy + Delta-G solvation = -2224.439214 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.24949 -35.62621 -32.97270 -31.52722 -29.47185 -28.13015 -25.14683 -23.95243 -21.52136 -21.13379 -20.45615 -18.65286 -15.95045 -15.29325 -14.91219 -14.64503 -14.41952 -13.49456 -13.30861 -12.93784 -12.66393 -12.18461 -12.14568 -11.64239 -11.33472 -11.27607 -10.98077 -10.87506 -10.69778 -10.64842 -10.49293 -10.27360 -10.02122 -9.61695 -9.11108 -8.93628 -8.63610 -8.26999 -7.76160 -5.93282 -3.97107 3.30531 3.39355 3.43106 4.47146 4.56020 5.05074 5.16248 5.37122 5.42842 5.60694 5.68564 5.78412 5.84557 5.92925 6.02186 6.12796 6.26958 6.29320 6.38721 6.51716 6.55885 6.59330 6.81690 6.84037 6.93475 7.17321 7.24588 7.38536 7.55099 7.67245 7.79052 7.87585 7.99600 8.20112 8.54005 9.06026 9.65828 11.12705 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.034422 B = 0.008091 C = 0.007470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.240445 B = 3459.702173 C = 3747.367152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C 0.058 3.942 4 N -0.691 5.691 5 C 0.093 3.907 6 C -0.092 4.092 7 C -0.107 4.107 8 C 0.042 3.958 9 C -0.497 4.497 10 H 0.056 0.944 11 C 0.059 3.941 12 N -0.892 5.892 13 Si 0.883 3.117 14 H -0.273 1.273 15 H -0.286 1.286 16 H -0.286 1.286 17 C -0.104 4.104 18 C -0.126 4.126 19 H 0.053 0.947 20 H 0.052 0.948 21 H 0.052 0.948 22 H 0.067 0.933 23 H 0.058 0.942 24 H 0.026 0.974 25 H 0.065 0.935 26 H 0.338 0.662 27 H 0.059 0.941 28 H 0.041 0.959 29 H 0.068 0.932 30 H 0.031 0.969 31 H 0.046 0.954 32 H 0.023 0.977 33 H 0.257 0.743 34 H 0.089 0.911 35 H 0.012 0.988 36 H 0.027 0.973 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.326 -6.578 -5.263 11.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.071 4.071 4 N -0.321 5.321 5 C -0.016 4.016 6 C -0.130 4.130 7 C -0.146 4.146 8 C 0.024 3.976 9 C -0.535 4.535 10 H 0.074 0.926 11 C -0.141 4.141 12 N -0.532 5.532 13 Si 0.712 3.288 14 H -0.198 1.198 15 H -0.212 1.212 16 H -0.213 1.213 17 C -0.143 4.143 18 C -0.164 4.164 19 H 0.072 0.928 20 H 0.071 0.929 21 H 0.071 0.929 22 H 0.086 0.914 23 H 0.077 0.923 24 H 0.045 0.955 25 H 0.083 0.917 26 H 0.156 0.844 27 H 0.078 0.922 28 H 0.060 0.940 29 H 0.087 0.913 30 H 0.050 0.950 31 H 0.065 0.935 32 H 0.041 0.959 33 H 0.067 0.933 34 H 0.107 0.893 35 H 0.031 0.969 36 H 0.045 0.955 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.289 -6.567 -5.790 12.056 hybrid contribution 0.367 -0.253 1.668 1.727 sum -7.923 -6.819 -4.121 11.237 Atomic orbital electron populations 1.21730 0.96008 1.01342 1.01704 1.21513 0.95175 0.97055 1.02311 1.21962 0.88970 0.96100 1.00109 1.60706 1.06194 1.15368 1.49789 1.21581 0.96258 0.87214 0.96567 1.21341 0.95066 0.97935 0.98616 1.21561 0.98412 0.95111 0.99478 1.18702 0.92912 0.96363 0.89643 1.21211 1.26380 1.11631 0.94313 0.92585 1.24954 0.95965 0.95224 0.97988 1.69890 1.43821 1.27422 1.12089 0.86672 0.80907 0.80893 0.80370 1.19804 1.21179 1.21266 1.21445 0.96568 0.93006 1.03278 1.22001 0.98261 1.00367 0.95816 0.92795 0.92869 0.92916 0.91392 0.92315 0.95537 0.91681 0.84442 0.92248 0.94038 0.91326 0.94982 0.93491 0.95871 0.93303 0.89279 0.96925 0.95463 0.91020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.91 37.16 0.37 -1.11 16 2 C -0.12 -1.43 6.19 -26.73 -0.17 -1.60 16 3 C 0.06 0.82 5.48 -3.83 -0.02 0.80 16 4 N -0.69 -11.27 6.25 -106.73 -0.67 -11.94 16 5 C 0.09 1.73 2.47 -67.71 -0.17 1.56 16 6 C -0.09 -1.80 5.30 -26.73 -0.14 -1.94 16 7 C -0.11 -2.27 5.41 -26.74 -0.14 -2.42 16 8 C 0.04 1.04 2.58 -91.77 -0.24 0.81 16 9 C -0.50 -13.26 6.61 -34.44 -0.23 -13.48 16 10 H 0.06 1.50 6.71 -52.49 -0.35 1.14 16 11 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 12 N -0.89 -25.39 11.33 55.43 0.63 -24.76 16 13 Si 0.88 21.21 29.54 -169.99 -5.02 16.19 16 14 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 15 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 16 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 17 C -0.10 -2.47 5.23 -26.75 -0.14 -2.61 16 18 C -0.13 -2.63 4.95 -26.76 -0.13 -2.77 16 19 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 20 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 21 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 22 H 0.07 0.80 8.14 -51.92 -0.42 0.38 16 23 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.03 0.39 7.44 -51.93 -0.39 0.00 16 25 H 0.06 0.91 8.05 -51.93 -0.42 0.49 16 26 H 0.34 5.49 8.47 -39.29 -0.33 5.16 16 27 H 0.06 1.11 7.80 -51.93 -0.40 0.70 16 28 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.07 1.46 6.62 -51.93 -0.34 1.11 16 30 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 34 H 0.09 2.37 6.08 -51.93 -0.32 2.05 16 35 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.03 0.54 7.45 -51.93 -0.39 0.15 16 37 H 0.07 1.65 7.20 -51.93 -0.37 1.28 16 LS Contribution 283.44 15.07 4.27 4.27 Total: -1.00 -27.18 283.44 -8.57 -35.74 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -6.68 Total: 1.74 kcal Atomic # 6 Polarization: -20.14 SS G_CDS: -1.10 Total: -21.25 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: -0.04 Total: -36.70 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -27.18 -8.57 -35.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173324864.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.051 kcal (2) G-P(sol) polarization free energy of solvation -27.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds