Wall clock time and date at job start Sun Mar 29 2020 21:29:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47329 * 2 1 4 4 N 1.46896 * 109.47200 * 180.02562 * 3 2 1 5 5 C 1.46903 * 111.00418 * 179.97438 * 4 3 2 6 6 C 1.52998 * 109.47667 * 205.00504 * 5 4 3 7 7 C 1.52997 * 109.47232 * 180.02562 * 6 5 4 8 8 C 1.52992 * 109.47296 * 59.99748 * 7 6 5 9 9 C 1.50700 * 109.47257 * 59.99902 * 8 7 6 10 10 H 1.07999 * 119.99988 * 359.97438 * 9 8 7 11 11 C 1.37885 * 120.00047 * 180.02562 * 9 8 7 12 12 N 1.31518 * 119.99792 * 359.72305 * 11 9 8 13 13 Si 1.86795 * 120.00009 * 180.02562 * 11 9 8 14 14 H 1.48508 * 109.47021 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47081 * 119.99727 * 13 11 9 16 16 H 1.48501 * 109.47213 * 240.00099 * 13 11 9 17 17 C 1.53003 * 109.47195 * 299.99941 * 8 7 6 18 18 C 1.52994 * 109.46903 * 84.99606 * 5 4 3 19 19 H 1.08996 * 109.46841 * 59.99842 * 1 2 3 20 20 H 1.09000 * 109.47048 * 180.02562 * 1 2 3 21 21 H 1.09003 * 109.46678 * 299.99668 * 1 2 3 22 22 H 1.09009 * 109.46911 * 239.99930 * 2 1 3 23 23 H 1.09002 * 109.47057 * 120.00530 * 2 1 3 24 24 H 1.08995 * 109.46990 * 60.00195 * 3 2 1 25 25 H 1.09002 * 109.47484 * 300.00269 * 3 2 1 26 26 H 1.00896 * 111.00418 * 303.95553 * 4 3 2 27 27 H 1.09005 * 109.46638 * 325.00521 * 5 4 3 28 28 H 1.08998 * 109.46987 * 59.99359 * 6 5 4 29 29 H 1.09005 * 109.46648 * 300.00005 * 6 5 4 30 30 H 1.08996 * 109.46678 * 299.99615 * 7 6 5 31 31 H 1.09004 * 109.46869 * 179.97438 * 7 6 5 32 32 H 1.08997 * 109.47279 * 180.02562 * 8 7 6 33 33 H 0.97000 * 119.99468 * 179.97438 * 12 11 9 34 34 H 1.08998 * 109.47453 * 180.02562 * 17 8 7 35 35 H 1.08996 * 109.47248 * 300.00419 * 17 8 7 36 36 H 1.08999 * 109.47824 * 300.01002 * 18 5 4 37 37 H 1.09005 * 109.46726 * 60.00969 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5090 1.4424 -0.0006 5 6 4.0356 2.8138 -0.0013 6 6 5.4386 2.8213 -0.6116 7 6 5.9872 4.2495 -0.6116 8 6 6.0533 4.7705 0.8254 9 6 6.9600 3.8841 1.6398 10 1 7.4407 3.0340 1.1787 11 6 7.1752 4.1579 2.9740 12 7 6.5934 5.1958 3.5344 13 14 8.2996 3.0597 3.9833 14 1 8.8315 1.9720 3.1234 15 1 9.4271 3.8642 4.5187 16 1 7.5337 2.4693 5.1103 17 6 4.6503 4.7631 1.4357 18 6 4.1015 3.3354 1.4355 19 1 -0.3633 0.5138 -0.8899 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8901 22 1 1.8933 -0.5139 -0.8901 23 1 1.8933 -0.5139 0.8900 24 1 1.6768 1.9562 0.8900 25 1 1.6767 1.9564 -0.8900 26 1 3.8710 0.9162 0.7804 27 1 3.3796 3.4546 -0.5906 28 1 5.3915 2.4496 -1.6351 29 1 6.0945 2.1805 -0.0222 30 1 5.3313 4.8905 -1.2006 31 1 6.9869 4.2547 -1.0460 32 1 6.4437 5.7881 0.8253 33 1 6.7444 5.3881 4.4730 34 1 4.6973 5.1347 2.4593 35 1 3.9945 5.4041 0.8466 36 1 3.1021 3.3301 1.8704 37 1 4.7576 2.6946 2.0249 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173324864.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:21 Heat of formation + Delta-G solvation = -51.178989 kcal Electronic energy + Delta-G solvation = -14687.340754 eV Core-core repulsion = 12462.234452 eV Total energy + Delta-G solvation = -2225.106302 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.87392 -36.98739 -34.58927 -33.11822 -31.22791 -29.68779 -26.91311 -25.35403 -23.17023 -22.30546 -22.01734 -20.47595 -17.84391 -16.84255 -16.40529 -16.20893 -15.79549 -15.05387 -14.91393 -14.53240 -14.11208 -13.60978 -13.37825 -13.18936 -12.96110 -12.86267 -12.62861 -12.45234 -12.32542 -12.17057 -11.82258 -11.73904 -11.64097 -11.43313 -10.90291 -10.72212 -10.58127 -10.31990 -9.17754 -8.02962 -6.12822 1.38732 1.42278 1.52150 2.45671 3.25107 3.29941 4.01466 4.13806 4.17515 4.29350 4.45601 4.54263 4.66506 4.72081 4.77984 4.79660 4.87977 4.91087 4.98581 5.01063 5.14079 5.20743 5.26159 5.35206 5.40971 5.47818 5.56444 5.61784 5.65628 5.73973 5.96342 6.22238 6.26347 6.46399 6.55224 6.97612 7.53014 9.02060 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.034422 B = 0.008091 C = 0.007470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.240445 B = 3459.702173 C = 3747.367152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.117 4.117 3 C 0.057 3.943 4 N -0.688 5.688 5 C 0.103 3.897 6 C -0.085 4.085 7 C -0.102 4.102 8 C 0.036 3.964 9 C -0.501 4.501 10 H 0.054 0.946 11 C 0.011 3.989 12 N -0.921 5.921 13 Si 0.942 3.058 14 H -0.266 1.266 15 H -0.285 1.285 16 H -0.284 1.284 17 C -0.101 4.101 18 C -0.114 4.114 19 H 0.058 0.942 20 H 0.066 0.934 21 H 0.051 0.949 22 H 0.068 0.932 23 H 0.058 0.942 24 H 0.020 0.980 25 H 0.069 0.931 26 H 0.338 0.662 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.050 0.950 30 H 0.049 0.951 31 H 0.046 0.954 32 H -0.012 1.012 33 H 0.256 0.744 34 H 0.055 0.945 35 H 0.025 0.975 36 H 0.037 0.963 37 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.136 -8.072 -6.168 13.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.155 4.155 3 C -0.072 4.072 4 N -0.317 5.317 5 C -0.006 4.006 6 C -0.123 4.123 7 C -0.140 4.140 8 C 0.018 3.982 9 C -0.540 4.540 10 H 0.072 0.928 11 C -0.186 4.186 12 N -0.562 5.562 13 Si 0.769 3.231 14 H -0.190 1.190 15 H -0.211 1.211 16 H -0.210 1.210 17 C -0.140 4.140 18 C -0.153 4.153 19 H 0.077 0.923 20 H 0.085 0.915 21 H 0.070 0.930 22 H 0.087 0.913 23 H 0.076 0.924 24 H 0.038 0.962 25 H 0.088 0.912 26 H 0.156 0.844 27 H 0.086 0.914 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.006 0.994 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.043 0.957 36 H 0.056 0.944 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -9.103 -8.074 -6.706 13.893 hybrid contribution 0.606 0.251 1.933 2.041 sum -8.497 -7.823 -4.773 12.497 Atomic orbital electron populations 1.21709 0.94506 1.02342 1.01931 1.21468 0.96416 0.95282 1.02344 1.22065 0.87369 0.97799 0.99988 1.60705 1.07712 1.13574 1.49735 1.21394 0.96049 0.88627 0.94558 1.21259 0.95137 0.96316 0.99583 1.21473 0.99143 0.96418 0.97008 1.18710 0.93114 0.94275 0.92111 1.21441 1.26362 1.11531 0.94643 0.92817 1.25646 0.97365 0.96433 0.99173 1.70033 1.45084 1.28884 1.12217 0.85741 0.79081 0.79371 0.78924 1.19041 1.21143 1.21039 1.21316 0.96409 0.94974 1.01275 1.21862 0.97887 0.98047 0.97529 0.92280 0.91527 0.93006 0.91291 0.92357 0.96160 0.91231 0.84402 0.91443 0.91921 0.93141 0.93258 0.93481 0.99415 0.93466 0.92674 0.95662 0.94435 0.93464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 9.91 71.98 0.71 -1.80 16 2 C -0.12 -2.45 6.19 30.59 0.19 -2.26 16 3 C 0.06 1.46 5.48 86.30 0.47 1.94 16 4 N -0.69 -20.93 6.25 -491.59 -3.07 -24.00 16 5 C 0.10 3.65 2.47 44.91 0.11 3.76 16 6 C -0.08 -3.18 5.30 30.59 0.16 -3.02 16 7 C -0.10 -4.21 5.41 30.59 0.17 -4.05 16 8 C 0.04 1.82 2.58 -11.54 -0.03 1.79 16 9 C -0.50 -27.00 6.61 25.60 0.17 -26.83 16 10 H 0.05 2.87 6.71 -2.91 -0.02 2.85 16 11 C 0.01 0.62 5.30 84.66 0.45 1.07 16 12 N -0.92 -53.60 11.33 21.45 0.24 -53.35 16 13 Si 0.94 43.80 29.54 68.60 2.03 45.83 16 14 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 15 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 16 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 17 C -0.10 -4.81 5.23 30.58 0.16 -4.65 16 18 C -0.11 -4.72 4.95 30.58 0.15 -4.57 16 19 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 20 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 21 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 22 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 23 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 24 H 0.02 0.55 7.44 -2.39 -0.02 0.53 16 25 H 0.07 1.74 8.05 -2.39 -0.02 1.72 16 26 H 0.34 10.41 8.47 -89.70 -0.76 9.65 16 27 H 0.07 2.32 7.80 -2.38 -0.02 2.30 16 28 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.05 2.07 6.62 -2.38 -0.02 2.06 16 30 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 32 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 33 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 34 H 0.05 3.00 6.08 -2.39 -0.01 2.99 16 35 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.04 1.45 7.45 -2.39 -0.02 1.43 16 37 H 0.05 2.17 7.20 -2.38 -0.02 2.16 16 Total: -1.00 -57.64 283.44 2.17 -55.47 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: 0.26 Total: 14.66 kcal Atomic # 6 Polarization: -41.31 SS G_CDS: 2.71 Total: -38.60 kcal Atomic # 7 Polarization: -74.53 SS G_CDS: -2.83 Total: -77.35 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -57.64 2.17 -55.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173324864.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.288 kcal (2) G-P(sol) polarization free energy of solvation -57.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds