Wall clock time and date at job start Sun Mar 29 2020 21:30:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53009 * 109.46913 * 2 1 4 4 N 1.46897 * 109.46774 * 182.00987 * 3 2 1 5 5 C 1.46899 * 111.00457 * 299.66090 * 4 3 2 6 6 C 1.50704 * 109.46793 * 293.60993 * 5 4 3 7 7 H 1.07991 * 120.00320 * 357.47002 * 6 5 4 8 8 C 1.37880 * 119.99588 * 177.46402 * 6 5 4 9 9 N 1.31514 * 120.00021 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99577 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.46874 * 90.00488 * 10 8 6 12 12 H 1.48503 * 109.46548 * 210.00282 * 10 8 6 13 13 H 1.48496 * 109.47068 * 329.99944 * 10 8 6 14 14 C 1.46907 * 111.00069 * 63.61991 * 4 3 2 15 15 C 1.53001 * 109.47368 * 66.04183 * 14 4 3 16 16 C 1.53780 * 113.61375 * 274.13743 * 15 14 4 17 17 C 1.53947 * 87.01785 * 220.05020 * 16 15 14 18 18 C 1.53776 * 113.61240 * 176.53071 * 15 14 4 19 19 H 1.08992 * 109.46927 * 59.99907 * 1 2 3 20 20 H 1.09005 * 109.46823 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46788 * 300.00055 * 1 2 3 22 22 H 1.08998 * 109.47476 * 239.99734 * 2 1 3 23 23 H 1.08997 * 109.47466 * 119.99367 * 2 1 3 24 24 H 1.08996 * 109.47019 * 62.01337 * 3 2 1 25 25 H 1.08996 * 109.46598 * 302.00829 * 3 2 1 26 26 H 1.08999 * 109.46906 * 53.61027 * 5 4 3 27 27 H 1.08993 * 109.46872 * 173.61114 * 5 4 3 28 28 H 0.97004 * 119.99711 * 179.97438 * 9 8 6 29 29 H 1.09003 * 109.47002 * 186.04067 * 14 4 3 30 30 H 1.08998 * 109.46777 * 306.03811 * 14 4 3 31 31 H 1.08994 * 112.84722 * 45.33245 * 15 14 4 32 32 H 1.08999 * 113.61342 * 334.56969 * 16 15 14 33 33 H 1.09002 * 113.61353 * 105.46768 * 16 15 14 34 34 H 1.09000 * 113.53507 * 270.80721 * 17 16 15 35 35 H 1.09006 * 113.66734 * 139.93867 * 17 16 15 36 36 H 1.09001 * 113.61701 * 254.52683 * 18 15 14 37 37 H 1.08994 * 113.61662 * 25.35015 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5082 1.4428 -0.0486 5 6 4.0737 0.7504 1.1170 6 6 3.7635 1.5343 2.3662 7 1 3.2380 2.4752 2.2968 8 6 4.1505 1.0500 3.5978 9 7 4.7907 -0.0956 3.6823 10 14 3.7653 2.0213 5.1463 11 1 2.4418 1.6048 5.6754 12 1 4.8114 1.7600 6.1674 13 1 3.7367 3.4712 4.8268 14 6 3.9936 0.8480 -1.3010 15 6 3.5903 1.7379 -2.4784 16 6 2.1790 1.4468 -3.0155 17 6 2.7627 1.6435 -4.4264 18 6 4.1250 1.2462 -3.8337 19 1 -0.3633 0.5138 -0.8899 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 1.8934 -0.5139 -0.8899 23 1 1.8934 -0.5137 0.8900 24 1 1.7064 1.9459 0.9075 25 1 1.6475 1.9666 -0.8714 26 1 3.6372 -0.2453 1.1951 27 1 5.1540 0.6655 1.0003 28 1 5.0633 -0.4361 4.5488 29 1 5.0797 0.7624 -1.2656 30 1 3.5551 -0.1420 -1.4269 31 1 3.7772 2.7956 -2.2929 32 1 1.8393 0.4294 -2.8215 33 1 1.4421 2.2004 -2.7378 34 1 2.7221 2.6757 -4.7742 35 1 2.3819 0.9332 -5.1604 36 1 4.9567 1.8381 -4.2158 37 1 4.3195 0.1742 -3.8634 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202740230.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:57 Heat of formation + Delta-G solvation = 7.497240 kcal Electronic energy + Delta-G solvation = -14708.475091 eV Core-core repulsion = 12485.913181 eV Total energy + Delta-G solvation = -2222.561910 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.09307 -36.47944 -32.75284 -31.88230 -28.36000 -26.57394 -25.30536 -24.59773 -22.12294 -22.04101 -19.23999 -18.89824 -16.23339 -15.63987 -15.09367 -14.39604 -14.32644 -14.22637 -13.47610 -13.00249 -12.40438 -12.26285 -12.22878 -11.79298 -11.42671 -11.09651 -11.08791 -10.94414 -10.74681 -10.67481 -10.45629 -10.30972 -10.16026 -9.85119 -9.73662 -9.40961 -9.04853 -8.38184 -7.04164 -5.97748 -3.98197 3.34105 3.40256 3.44893 4.46252 4.80872 4.88134 4.98145 5.08452 5.31665 5.38248 5.57058 5.62056 5.75741 5.87595 5.92658 5.94941 6.02128 6.02840 6.10561 6.18817 6.27892 6.35946 6.43033 6.49265 6.55646 6.58727 6.79013 6.89854 7.04951 7.41373 7.50401 7.87916 8.19112 8.31614 8.65562 9.10167 9.65653 11.13035 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.038594 B = 0.007941 C = 0.007220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.319293 B = 3524.978776 C = 3877.336943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.163 4.163 3 C 0.064 3.936 4 N -0.535 5.535 5 C 0.188 3.812 6 C -0.502 4.502 7 H 0.062 0.938 8 C 0.054 3.946 9 N -0.900 5.900 10 Si 0.895 3.105 11 H -0.282 1.282 12 H -0.287 1.287 13 H -0.273 1.273 14 C 0.060 3.940 15 C -0.100 4.100 16 C -0.136 4.136 17 C -0.144 4.144 18 C -0.138 4.138 19 H 0.045 0.955 20 H 0.043 0.957 21 H 0.053 0.947 22 H 0.051 0.949 23 H 0.073 0.927 24 H 0.074 0.926 25 H 0.059 0.941 26 H 0.000 1.000 27 H 0.024 0.976 28 H 0.260 0.740 29 H 0.063 0.937 30 H 0.027 0.973 31 H 0.093 0.907 32 H 0.077 0.923 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.252 1.275 -12.096 13.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.202 4.202 3 C -0.065 4.065 4 N -0.258 5.258 5 C 0.063 3.937 6 C -0.541 4.541 7 H 0.080 0.920 8 C -0.147 4.147 9 N -0.540 5.540 10 Si 0.723 3.277 11 H -0.208 1.208 12 H -0.213 1.213 13 H -0.198 1.198 14 C -0.068 4.068 15 C -0.118 4.118 16 C -0.173 4.173 17 C -0.181 4.181 18 C -0.176 4.176 19 H 0.065 0.935 20 H 0.062 0.938 21 H 0.072 0.928 22 H 0.070 0.930 23 H 0.092 0.908 24 H 0.093 0.907 25 H 0.077 0.923 26 H 0.017 0.983 27 H 0.042 0.958 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.045 0.955 31 H 0.111 0.889 32 H 0.096 0.904 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.983 1.655 -11.934 13.038 hybrid contribution -0.386 -0.509 0.957 1.150 sum -5.369 1.146 -10.977 12.273 Atomic orbital electron populations 1.21657 0.96694 1.00553 1.01121 1.22176 0.95281 1.00691 1.02042 1.22125 0.88638 0.94300 1.01416 1.62334 1.06436 1.54934 1.02074 1.19771 0.94657 0.92691 0.86603 1.21171 1.36256 1.06274 0.90366 0.92005 1.24980 0.95464 0.95127 0.99101 1.69963 1.39921 1.19518 1.24635 0.86544 0.77839 0.80462 0.82858 1.20814 1.21327 1.19815 1.22057 0.99585 0.94844 0.90337 1.22537 0.95398 1.00761 0.93144 1.23084 0.97186 1.01621 0.95426 1.22851 0.97365 1.01028 0.96894 1.22909 0.96708 1.01011 0.96967 0.93549 0.93752 0.92835 0.93031 0.90794 0.90740 0.92298 0.98270 0.95830 0.93050 0.91803 0.95532 0.88866 0.90432 0.91699 0.90623 0.92139 0.91896 0.90519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.91 37.16 0.37 -1.78 16 2 C -0.16 -2.98 5.25 -26.72 -0.14 -3.12 16 3 C 0.06 1.24 4.67 -3.82 -0.02 1.22 16 4 N -0.54 -11.63 4.70 -236.07 -1.11 -12.74 16 5 C 0.19 4.93 4.49 -4.97 -0.02 4.91 16 6 C -0.50 -14.23 8.46 -34.44 -0.29 -14.52 16 7 H 0.06 1.75 7.22 -52.49 -0.38 1.37 16 8 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 9 N -0.90 -27.02 13.29 55.43 0.74 -26.29 16 10 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 13 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 14 C 0.06 1.11 4.69 -3.82 -0.02 1.09 16 15 C -0.10 -1.49 3.49 -89.81 -0.31 -1.80 16 16 C -0.14 -1.80 5.83 -25.83 -0.15 -1.95 16 17 C -0.14 -1.64 8.09 -25.83 -0.21 -1.85 16 18 C -0.14 -1.72 7.65 -25.92 -0.20 -1.92 16 19 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 20 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 21 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 22 H 0.05 0.90 5.33 -51.93 -0.28 0.62 16 23 H 0.07 1.60 6.38 -51.93 -0.33 1.27 16 24 H 0.07 1.60 6.92 -51.93 -0.36 1.24 16 25 H 0.06 1.01 5.00 -51.93 -0.26 0.76 16 26 H 0.00 -0.01 6.04 -51.93 -0.31 -0.32 16 27 H 0.02 0.67 7.92 -51.93 -0.41 0.26 16 28 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 29 H 0.06 1.21 7.93 -51.93 -0.41 0.80 16 30 H 0.03 0.49 5.81 -51.93 -0.30 0.19 16 31 H 0.09 1.48 8.14 -51.93 -0.42 1.05 16 32 H 0.08 1.06 6.96 -51.93 -0.36 0.70 16 33 H 0.06 0.85 7.21 -51.93 -0.37 0.48 16 34 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.08 0.94 8.10 -51.93 -0.42 0.52 16 LS Contribution 282.98 15.07 4.26 4.26 Total: -1.00 -29.16 282.98 -8.52 -37.68 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: -6.30 Total: -1.52 kcal Atomic # 6 Polarization: -17.18 SS G_CDS: -1.09 Total: -18.27 kcal Atomic # 7 Polarization: -38.66 SS G_CDS: -0.37 Total: -39.03 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -29.16 -8.52 -37.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202740230.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.175 kcal (2) G-P(sol) polarization free energy of solvation -29.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds