Wall clock time and date at job start Sun Mar 29 2020 21:30:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53009 * 109.46913 * 2 1 4 4 N 1.46897 * 109.46774 * 182.00987 * 3 2 1 5 5 C 1.46899 * 111.00457 * 299.66090 * 4 3 2 6 6 C 1.50704 * 109.46793 * 293.60993 * 5 4 3 7 7 H 1.07991 * 120.00320 * 357.47002 * 6 5 4 8 8 C 1.37880 * 119.99588 * 177.46402 * 6 5 4 9 9 N 1.31514 * 120.00021 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99577 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.46874 * 90.00488 * 10 8 6 12 12 H 1.48503 * 109.46548 * 210.00282 * 10 8 6 13 13 H 1.48496 * 109.47068 * 329.99944 * 10 8 6 14 14 C 1.46907 * 111.00069 * 63.61991 * 4 3 2 15 15 C 1.53001 * 109.47368 * 66.04183 * 14 4 3 16 16 C 1.53780 * 113.61375 * 274.13743 * 15 14 4 17 17 C 1.53947 * 87.01785 * 220.05020 * 16 15 14 18 18 C 1.53776 * 113.61240 * 176.53071 * 15 14 4 19 19 H 1.08992 * 109.46927 * 59.99907 * 1 2 3 20 20 H 1.09005 * 109.46823 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46788 * 300.00055 * 1 2 3 22 22 H 1.08998 * 109.47476 * 239.99734 * 2 1 3 23 23 H 1.08997 * 109.47466 * 119.99367 * 2 1 3 24 24 H 1.08996 * 109.47019 * 62.01337 * 3 2 1 25 25 H 1.08996 * 109.46598 * 302.00829 * 3 2 1 26 26 H 1.08999 * 109.46906 * 53.61027 * 5 4 3 27 27 H 1.08993 * 109.46872 * 173.61114 * 5 4 3 28 28 H 0.97004 * 119.99711 * 179.97438 * 9 8 6 29 29 H 1.09003 * 109.47002 * 186.04067 * 14 4 3 30 30 H 1.08998 * 109.46777 * 306.03811 * 14 4 3 31 31 H 1.08994 * 112.84722 * 45.33245 * 15 14 4 32 32 H 1.08999 * 113.61342 * 334.56969 * 16 15 14 33 33 H 1.09002 * 113.61353 * 105.46768 * 16 15 14 34 34 H 1.09000 * 113.53507 * 270.80721 * 17 16 15 35 35 H 1.09006 * 113.66734 * 139.93867 * 17 16 15 36 36 H 1.09001 * 113.61701 * 254.52683 * 18 15 14 37 37 H 1.08994 * 113.61662 * 25.35015 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5082 1.4428 -0.0486 5 6 4.0737 0.7504 1.1170 6 6 3.7635 1.5343 2.3662 7 1 3.2380 2.4752 2.2968 8 6 4.1505 1.0500 3.5978 9 7 4.7907 -0.0956 3.6823 10 14 3.7653 2.0213 5.1463 11 1 2.4418 1.6048 5.6754 12 1 4.8114 1.7600 6.1674 13 1 3.7367 3.4712 4.8268 14 6 3.9936 0.8480 -1.3010 15 6 3.5903 1.7379 -2.4784 16 6 2.1790 1.4468 -3.0155 17 6 2.7627 1.6435 -4.4264 18 6 4.1250 1.2462 -3.8337 19 1 -0.3633 0.5138 -0.8899 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 1.8934 -0.5139 -0.8899 23 1 1.8934 -0.5137 0.8900 24 1 1.7064 1.9459 0.9075 25 1 1.6475 1.9666 -0.8714 26 1 3.6372 -0.2453 1.1951 27 1 5.1540 0.6655 1.0003 28 1 5.0633 -0.4361 4.5488 29 1 5.0797 0.7624 -1.2656 30 1 3.5551 -0.1420 -1.4269 31 1 3.7772 2.7956 -2.2929 32 1 1.8393 0.4294 -2.8215 33 1 1.4421 2.2004 -2.7378 34 1 2.7221 2.6757 -4.7742 35 1 2.3819 0.9332 -5.1604 36 1 4.9567 1.8381 -4.2158 37 1 4.3195 0.1742 -3.8634 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202740230.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:57 Heat of formation + Delta-G solvation = -10.014830 kcal Electronic energy + Delta-G solvation = -14709.234471 eV Core-core repulsion = 12485.913181 eV Total energy + Delta-G solvation = -2223.321290 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.38400 -37.98279 -34.82028 -33.48008 -30.09896 -28.19382 -26.56973 -26.09049 -23.87780 -23.45243 -20.74240 -20.13592 -18.37659 -16.99762 -16.89236 -16.07915 -15.73591 -15.59477 -15.09693 -14.47385 -14.19614 -13.72733 -13.27073 -13.24828 -13.05610 -12.75007 -12.67743 -12.44848 -12.35860 -12.27220 -12.11715 -11.96057 -11.48349 -11.39027 -11.15457 -10.94893 -10.70943 -10.58205 -8.83488 -8.18976 -6.28576 1.39289 1.40830 1.52474 2.40296 3.13132 3.38659 3.79716 3.88830 3.98034 4.06447 4.15291 4.22992 4.51486 4.56077 4.68206 4.74184 4.83268 4.86157 4.93342 4.96327 5.05734 5.07439 5.14244 5.16948 5.18697 5.22815 5.34189 5.45589 5.46846 5.54694 5.68239 5.72997 6.10473 6.43233 6.74059 6.88980 7.40902 8.91772 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.038594 B = 0.007941 C = 0.007220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.319293 B = 3524.978776 C = 3877.336943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.154 4.154 3 C 0.068 3.932 4 N -0.545 5.545 5 C 0.204 3.796 6 C -0.518 4.518 7 H 0.059 0.941 8 C 0.001 3.999 9 N -0.936 5.936 10 Si 0.966 3.034 11 H -0.272 1.272 12 H -0.282 1.282 13 H -0.265 1.265 14 C 0.062 3.938 15 C -0.106 4.106 16 C -0.135 4.135 17 C -0.129 4.129 18 C -0.133 4.133 19 H 0.071 0.929 20 H 0.057 0.943 21 H 0.048 0.952 22 H 0.060 0.940 23 H 0.030 0.970 24 H 0.050 0.950 25 H 0.089 0.911 26 H -0.024 1.024 27 H -0.009 1.009 28 H 0.263 0.737 29 H 0.048 0.952 30 H 0.026 0.974 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.689 2.194 -13.323 15.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.193 4.193 3 C -0.060 4.060 4 N -0.268 5.268 5 C 0.078 3.922 6 C -0.557 4.557 7 H 0.077 0.923 8 C -0.197 4.197 9 N -0.577 5.577 10 Si 0.791 3.209 11 H -0.198 1.198 12 H -0.207 1.207 13 H -0.190 1.190 14 C -0.066 4.066 15 C -0.125 4.125 16 C -0.173 4.173 17 C -0.166 4.166 18 C -0.171 4.171 19 H 0.090 0.910 20 H 0.076 0.924 21 H 0.067 0.933 22 H 0.079 0.921 23 H 0.049 0.951 24 H 0.068 0.932 25 H 0.107 0.893 26 H -0.007 1.007 27 H 0.009 0.991 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.045 0.955 31 H 0.103 0.897 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.106 0.894 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.432 2.580 -13.184 14.895 hybrid contribution 0.095 -0.817 1.294 1.533 sum -6.338 1.763 -11.891 13.589 Atomic orbital electron populations 1.21611 0.93778 1.01824 1.02153 1.22047 0.97797 0.99206 1.00293 1.22130 0.87136 0.95245 1.01510 1.62254 1.08012 1.54608 1.01899 1.19397 0.92649 0.91832 0.88331 1.21456 1.36314 1.06345 0.91551 0.92256 1.25896 0.95063 0.96107 1.02636 1.70093 1.40822 1.21130 1.25643 0.85424 0.77961 0.79103 0.78404 1.19783 1.20719 1.18979 1.22124 0.98645 0.95712 0.90112 1.22538 0.97719 0.99499 0.92696 1.23077 0.95907 1.01594 0.96696 1.22792 0.95604 1.02237 0.95983 1.22907 0.97998 1.01236 0.94991 0.90962 0.92428 0.93310 0.92148 0.95136 0.93155 0.89280 1.00655 0.99063 0.92802 0.93342 0.95545 0.89661 0.90638 0.91226 0.89377 0.90464 0.90970 0.90374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.86 9.91 71.98 0.71 -3.15 16 2 C -0.15 -5.64 5.25 30.60 0.16 -5.48 16 3 C 0.07 2.64 4.67 86.31 0.40 3.04 16 4 N -0.55 -24.31 4.70 -900.78 -4.23 -28.54 16 5 C 0.20 11.26 4.49 85.56 0.38 11.64 16 6 C -0.52 -30.27 8.46 25.60 0.22 -30.05 16 7 H 0.06 3.42 7.22 -2.92 -0.02 3.40 16 8 C 0.00 0.03 5.46 84.66 0.46 0.49 16 9 N -0.94 -57.71 13.29 21.45 0.28 -57.43 16 10 Si 0.97 45.34 29.54 68.60 2.03 47.37 16 11 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 12 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 13 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 14 C 0.06 2.31 4.69 86.30 0.40 2.71 16 15 C -0.11 -3.02 3.49 -10.27 -0.04 -3.06 16 16 C -0.14 -3.21 5.83 31.18 0.18 -3.03 16 17 C -0.13 -2.47 8.09 31.18 0.25 -2.22 16 18 C -0.13 -3.01 7.65 31.12 0.24 -2.78 16 19 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 20 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 21 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 22 H 0.06 2.07 5.33 -2.39 -0.01 2.06 16 23 H 0.03 1.37 6.38 -2.39 -0.02 1.35 16 24 H 0.05 2.19 6.92 -2.39 -0.02 2.17 16 25 H 0.09 2.92 5.00 -2.39 -0.01 2.91 16 26 H -0.02 -1.43 6.04 -2.39 -0.01 -1.44 16 27 H -0.01 -0.53 7.92 -2.39 -0.02 -0.55 16 28 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 29 H 0.05 1.90 7.93 -2.39 -0.02 1.88 16 30 H 0.03 0.98 5.81 -2.39 -0.01 0.96 16 31 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 32 H 0.08 1.84 6.96 -2.39 -0.02 1.82 16 33 H 0.07 1.59 7.21 -2.39 -0.02 1.57 16 34 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 36 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.08 1.75 8.10 -2.39 -0.02 1.73 16 Total: -1.00 -64.33 282.98 2.48 -61.85 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: 1.02 Total: 8.62 kcal Atomic # 6 Polarization: -35.25 SS G_CDS: 3.38 Total: -31.87 kcal Atomic # 7 Polarization: -82.02 SS G_CDS: -3.95 Total: -85.96 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -64.33 2.48 -61.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202740230.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.835 kcal (2) G-P(sol) polarization free energy of solvation -64.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds