Wall clock time and date at job start Sun Mar 29 2020 21:50:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53008 * 1
3 3 H 1.08999 * 109.46614 * 2 1
4 4 O 1.42899 * 109.47438 * 120.00276 * 2 1 3
5 5 C 1.42903 * 113.99629 * 270.00038 * 4 2 1
6 6 C 1.50701 * 109.46878 * 179.97438 * 5 4 2
7 7 H 1.07998 * 120.00129 * 0.02562 * 6 5 4
8 8 C 1.37880 * 119.99861 * 179.97438 * 6 5 4
9 9 N 1.31510 * 119.99913 * 0.02562 * 8 6 5
10 10 Si 1.86797 * 119.99734 * 180.02562 * 8 6 5
11 11 H 1.48506 * 109.47294 * 60.00559 * 10 8 6
12 12 H 1.48503 * 109.46954 * 180.02562 * 10 8 6
13 13 H 1.48503 * 109.47431 * 300.00157 * 10 8 6
14 14 C 1.50704 * 109.46819 * 240.00548 * 2 1 3
15 15 C 1.33384 * 125.20534 * 99.99829 * 14 2 1
16 16 C 1.38424 * 114.92133 * 179.97438 * 15 14 2
17 17 C 1.33390 * 114.91976 * 359.97438 * 16 15 14
18 18 S 1.75886 * 109.59446 * 359.75563 * 17 16 15
19 19 H 1.08994 * 109.47301 * 59.99785 * 1 2 3
20 20 H 1.08999 * 109.46614 * 179.97438 * 1 2 3
21 21 H 1.09000 * 109.46387 * 299.99499 * 1 2 3
22 22 H 1.09002 * 109.47382 * 59.99956 * 5 4 2
23 23 H 1.09001 * 109.46938 * 299.99942 * 5 4 2
24 24 H 0.97002 * 119.99768 * 179.97438 * 9 8 6
25 25 H 1.07994 * 122.53753 * 359.97438 * 15 14 2
26 26 H 1.07997 * 122.54052 * 180.02562 * 16 15 14
27 27 H 1.07999 * 125.20685 * 180.02562 * 17 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 8 2.0065 -0.6737 1.1667
5 6 2.2002 0.1829 2.2940
6 6 2.7005 -0.6284 3.4613
7 1 2.8554 -1.6917 3.3530
8 6 2.9614 -0.0131 4.6672
9 7 2.7732 1.2818 4.7990
10 14 3.5821 -1.0187 6.1138
11 1 4.8712 -1.6617 5.7530
12 1 3.7834 -0.1286 7.2854
13 1 2.5849 -2.0653 6.4535
14 6 2.0324 -0.7103 -1.2306
15 6 2.4670 -0.1117 -2.3404
16 6 2.8810 -0.9715 -3.3431
17 6 2.7830 -2.2685 -3.0472
18 16 2.1432 -2.4555 -1.4196
19 1 -0.3633 0.5138 -0.8899
20 1 -0.3632 -1.0277 -0.0005
21 1 -0.3632 0.5138 0.8901
22 1 1.2539 0.6547 2.5588
23 1 2.9321 0.9513 2.0449
24 1 2.9564 1.7147 5.6475
25 1 2.4939 0.9625 -2.4486
26 1 3.2558 -0.6191 -4.2926
27 1 3.0588 -3.0797 -3.7047
RHF calculation, no. of doubly occupied orbitals= 36
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001205604701.mol2 27
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:50:19
Heat of formation + Delta-G solvation = -23.096042 kcal
Electronic energy + Delta-G solvation = -11623.916826 eV
Core-core repulsion = 9473.396311 eV
Total energy + Delta-G solvation = -2150.520514 eV
No. of doubly occupied orbitals = 36
Molecular weight
(most abundant/longest-lived isotopes) = 212.061 amu
Computer time = 0.14 seconds
Orbital eigenvalues (eV)
-38.06793 -36.62309 -32.93725 -31.45066 -28.14235 -27.13656 -24.09846 -22.49141
-21.35572 -19.01534 -17.20604 -16.20894 -15.56270 -15.08120 -14.40678 -14.22788
-13.66506 -12.78132 -12.51813 -12.42261 -12.01281 -11.93352 -11.51285 -11.43156
-10.85250 -10.83369 -10.64838 -10.25764 -10.02775 -9.16399 -8.94052 -8.41296
-8.20254 -8.16222 -6.12422 -4.14249 1.26621 1.94874 2.37708 2.96281
3.32058 3.34588 3.38648 4.32472 4.70805 5.21353 5.24099 5.32644
5.59737 5.69600 5.72018 5.77322 6.05904 6.27081 6.32478 6.49485
6.59517 6.69741 7.06379 7.39606 7.77454 8.11858 8.50994 8.97784
9.50428 10.99002
Molecular weight = 212.06amu
Principal moments of inertia in cm(-1)
A = 0.049555 B = 0.007095 C = 0.006677
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 564.889834 B = 3945.657518 C = 4192.783370
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.165 4.165
2 C 0.149 3.851
3 H 0.070 0.930
4 O -0.384 6.384
5 C 0.196 3.804
6 C -0.516 4.516
7 H 0.066 0.934
8 C 0.058 3.942
9 N -0.899 5.899
10 Si 0.908 3.092
11 H -0.274 1.274
12 H -0.286 1.286
13 H -0.274 1.274
14 C -0.151 4.151
15 C -0.154 4.154
16 C -0.134 4.134
17 C -0.240 4.240
18 S 0.140 5.860
19 H 0.057 0.943
20 H 0.060 0.940
21 H 0.066 0.934
22 H 0.008 0.992
23 H 0.007 0.993
24 H 0.265 0.735
25 H 0.136 0.864
26 H 0.134 0.866
27 H 0.158 0.842
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.075 -3.365 -13.369 13.941
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.223 4.223
2 C 0.088 3.912
3 H 0.088 0.912
4 O -0.304 6.304
5 C 0.122 3.878
6 C -0.554 4.554
7 H 0.085 0.915
8 C -0.144 4.144
9 N -0.538 5.538
10 Si 0.735 3.265
11 H -0.200 1.200
12 H -0.211 1.211
13 H -0.200 1.200
14 C -0.269 4.269
15 C -0.184 4.184
16 C -0.165 4.165
17 C -0.376 4.376
18 S 0.404 5.596
19 H 0.076 0.924
20 H 0.079 0.921
21 H 0.085 0.915
22 H 0.026 0.974
23 H 0.024 0.976
24 H 0.074 0.926
25 H 0.154 0.846
26 H 0.152 0.848
27 H 0.176 0.824
Dipole moment (debyes) X Y Z Total
from point charges -2.355 -4.668 -12.305 13.370
hybrid contribution 0.681 1.150 -0.147 1.344
sum -1.674 -3.519 -12.452 13.048
Atomic orbital electron populations
1.22261 0.95534 1.02588 1.01913 1.20222 0.93024 0.94474 0.83487
0.91223 1.87938 1.85882 1.36805 1.19814 1.20279 0.95265 0.90093
0.82185 1.21003 1.44278 0.95601 0.94499 0.91546 1.24934 0.95561
0.95116 0.98767 1.69949 1.48801 1.09073 1.25941 0.86392 0.79477
0.79678 0.80922 1.19974 1.21143 1.19984 1.24717 1.05920 0.96771
0.99515 1.20018 1.03950 1.01064 0.93386 1.20041 1.03557 0.92381
1.00496 1.25704 1.10532 1.00509 1.00857 1.84474 1.61612 1.04736
1.08789 0.92371 0.92090 0.91483 0.97416 0.97557 0.92565 0.84600
0.84849 0.82415
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.75 9.51 37.16 0.35 -2.40 15
2 C 0.15 2.85 3.16 -27.88 -0.09 2.77 15
3 H 0.07 1.31 7.77 -51.93 -0.40 0.91 15
4 O -0.38 -9.30 9.77 -35.23 -0.34 -9.65 15
5 C 0.20 5.35 5.50 36.01 0.20 5.54 15
6 C -0.52 -15.19 9.43 -34.44 -0.32 -15.52 15
7 H 0.07 1.95 7.81 -52.49 -0.41 1.54 15
8 C 0.06 1.66 5.46 -17.82 -0.10 1.56 15
9 N -0.90 -26.80 13.29 55.43 0.74 -26.07 15
10 Si 0.91 21.89 29.54 -169.99 -5.02 16.87 15
11 H -0.27 -6.51 7.11 56.52 0.40 -6.10 15
12 H -0.29 -6.73 7.11 56.52 0.40 -6.33 15
13 H -0.27 -6.49 7.11 56.52 0.40 -6.09 15
14 C -0.15 -2.60 5.48 -36.00 -0.20 -2.80 15
15 C -0.15 -2.29 10.04 -41.21 -0.41 -2.70 15
16 C -0.13 -1.75 10.18 -41.21 -0.42 -2.17 15
17 C -0.24 -3.16 11.23 29.04 0.33 -2.83 15
18 S 0.14 2.23 23.12 -107.50 -2.49 -0.25 15
19 H 0.06 0.81 8.14 -51.93 -0.42 0.39 15
20 H 0.06 1.01 8.14 -51.93 -0.42 0.58 15
21 H 0.07 1.16 7.87 -51.93 -0.41 0.75 15
22 H 0.01 0.22 7.87 -51.93 -0.41 -0.19 15
23 H 0.01 0.19 8.08 -51.93 -0.42 -0.23 15
24 H 0.26 7.41 8.31 -40.82 -0.34 7.07 15
25 H 0.14 1.76 8.06 -52.49 -0.42 1.33 15
26 H 0.13 1.37 8.06 -52.49 -0.42 0.95 15
27 H 0.16 1.62 8.06 -52.49 -0.42 1.20 15
LS Contribution 255.19 15.07 3.85 3.85
Total: -1.00 -30.79 255.19 -7.23 -38.02
By element:
Atomic # 1 Polarization: -0.93 SS G_CDS: -3.30 Total: -4.22 kcal
Atomic # 6 Polarization: -17.88 SS G_CDS: -0.66 Total: -18.55 kcal
Atomic # 7 Polarization: -26.80 SS G_CDS: 0.74 Total: -26.07 kcal
Atomic # 8 Polarization: -9.30 SS G_CDS: -0.34 Total: -9.65 kcal
Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal
Atomic # 16 Polarization: 2.23 SS G_CDS: -2.49 Total: -0.25 kcal
Total LS contribution 3.85 Total: 3.85 kcal
Total: -30.79 -7.23 -38.02 kcal
The number of atoms in the molecule is 27
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001205604701.mol2 27
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 14.928 kcal
(2) G-P(sol) polarization free energy of solvation -30.794 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.865 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.231 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.024 kcal
(6) G-S(sol) free energy of system = (1) + (5) -23.096 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.14 seconds