Wall clock time and date at job start Sun Mar 29 2020 21:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.46614 * 2 1 4 4 O 1.42899 * 109.47438 * 120.00276 * 2 1 3 5 5 C 1.42903 * 113.99629 * 270.00038 * 4 2 1 6 6 C 1.50701 * 109.46878 * 179.97438 * 5 4 2 7 7 H 1.07998 * 120.00129 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99861 * 179.97438 * 6 5 4 9 9 N 1.31510 * 119.99913 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 119.99734 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.47294 * 60.00559 * 10 8 6 12 12 H 1.48503 * 109.46954 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.47431 * 300.00157 * 10 8 6 14 14 C 1.50704 * 109.46819 * 240.00548 * 2 1 3 15 15 C 1.33384 * 125.20534 * 99.99829 * 14 2 1 16 16 C 1.38424 * 114.92133 * 179.97438 * 15 14 2 17 17 C 1.33390 * 114.91976 * 359.97438 * 16 15 14 18 18 S 1.75886 * 109.59446 * 359.75563 * 17 16 15 19 19 H 1.08994 * 109.47301 * 59.99785 * 1 2 3 20 20 H 1.08999 * 109.46614 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.46387 * 299.99499 * 1 2 3 22 22 H 1.09002 * 109.47382 * 59.99956 * 5 4 2 23 23 H 1.09001 * 109.46938 * 299.99942 * 5 4 2 24 24 H 0.97002 * 119.99768 * 179.97438 * 9 8 6 25 25 H 1.07994 * 122.53753 * 359.97438 * 15 14 2 26 26 H 1.07997 * 122.54052 * 180.02562 * 16 15 14 27 27 H 1.07999 * 125.20685 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0065 -0.6737 1.1667 5 6 2.2002 0.1829 2.2940 6 6 2.7005 -0.6284 3.4613 7 1 2.8554 -1.6917 3.3530 8 6 2.9614 -0.0131 4.6672 9 7 2.7732 1.2818 4.7990 10 14 3.5821 -1.0187 6.1138 11 1 4.8712 -1.6617 5.7530 12 1 3.7834 -0.1286 7.2854 13 1 2.5849 -2.0653 6.4535 14 6 2.0324 -0.7103 -1.2306 15 6 2.4670 -0.1117 -2.3404 16 6 2.8810 -0.9715 -3.3431 17 6 2.7830 -2.2685 -3.0472 18 16 2.1432 -2.4555 -1.4196 19 1 -0.3633 0.5138 -0.8899 20 1 -0.3632 -1.0277 -0.0005 21 1 -0.3632 0.5138 0.8901 22 1 1.2539 0.6547 2.5588 23 1 2.9321 0.9513 2.0449 24 1 2.9564 1.7147 5.6475 25 1 2.4939 0.9625 -2.4486 26 1 3.2558 -0.6191 -4.2926 27 1 3.0588 -3.0797 -3.7047 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205604701.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:19 Heat of formation + Delta-G solvation = -23.096042 kcal Electronic energy + Delta-G solvation = -11623.916826 eV Core-core repulsion = 9473.396311 eV Total energy + Delta-G solvation = -2150.520514 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 212.061 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.06793 -36.62309 -32.93725 -31.45066 -28.14235 -27.13656 -24.09846 -22.49141 -21.35572 -19.01534 -17.20604 -16.20894 -15.56270 -15.08120 -14.40678 -14.22788 -13.66506 -12.78132 -12.51813 -12.42261 -12.01281 -11.93352 -11.51285 -11.43156 -10.85250 -10.83369 -10.64838 -10.25764 -10.02775 -9.16399 -8.94052 -8.41296 -8.20254 -8.16222 -6.12422 -4.14249 1.26621 1.94874 2.37708 2.96281 3.32058 3.34588 3.38648 4.32472 4.70805 5.21353 5.24099 5.32644 5.59737 5.69600 5.72018 5.77322 6.05904 6.27081 6.32478 6.49485 6.59517 6.69741 7.06379 7.39606 7.77454 8.11858 8.50994 8.97784 9.50428 10.99002 Molecular weight = 212.06amu Principal moments of inertia in cm(-1) A = 0.049555 B = 0.007095 C = 0.006677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.889834 B = 3945.657518 C = 4192.783370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.149 3.851 3 H 0.070 0.930 4 O -0.384 6.384 5 C 0.196 3.804 6 C -0.516 4.516 7 H 0.066 0.934 8 C 0.058 3.942 9 N -0.899 5.899 10 Si 0.908 3.092 11 H -0.274 1.274 12 H -0.286 1.286 13 H -0.274 1.274 14 C -0.151 4.151 15 C -0.154 4.154 16 C -0.134 4.134 17 C -0.240 4.240 18 S 0.140 5.860 19 H 0.057 0.943 20 H 0.060 0.940 21 H 0.066 0.934 22 H 0.008 0.992 23 H 0.007 0.993 24 H 0.265 0.735 25 H 0.136 0.864 26 H 0.134 0.866 27 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.075 -3.365 -13.369 13.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.088 3.912 3 H 0.088 0.912 4 O -0.304 6.304 5 C 0.122 3.878 6 C -0.554 4.554 7 H 0.085 0.915 8 C -0.144 4.144 9 N -0.538 5.538 10 Si 0.735 3.265 11 H -0.200 1.200 12 H -0.211 1.211 13 H -0.200 1.200 14 C -0.269 4.269 15 C -0.184 4.184 16 C -0.165 4.165 17 C -0.376 4.376 18 S 0.404 5.596 19 H 0.076 0.924 20 H 0.079 0.921 21 H 0.085 0.915 22 H 0.026 0.974 23 H 0.024 0.976 24 H 0.074 0.926 25 H 0.154 0.846 26 H 0.152 0.848 27 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -2.355 -4.668 -12.305 13.370 hybrid contribution 0.681 1.150 -0.147 1.344 sum -1.674 -3.519 -12.452 13.048 Atomic orbital electron populations 1.22261 0.95534 1.02588 1.01913 1.20222 0.93024 0.94474 0.83487 0.91223 1.87938 1.85882 1.36805 1.19814 1.20279 0.95265 0.90093 0.82185 1.21003 1.44278 0.95601 0.94499 0.91546 1.24934 0.95561 0.95116 0.98767 1.69949 1.48801 1.09073 1.25941 0.86392 0.79477 0.79678 0.80922 1.19974 1.21143 1.19984 1.24717 1.05920 0.96771 0.99515 1.20018 1.03950 1.01064 0.93386 1.20041 1.03557 0.92381 1.00496 1.25704 1.10532 1.00509 1.00857 1.84474 1.61612 1.04736 1.08789 0.92371 0.92090 0.91483 0.97416 0.97557 0.92565 0.84600 0.84849 0.82415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.75 9.51 37.16 0.35 -2.40 15 2 C 0.15 2.85 3.16 -27.88 -0.09 2.77 15 3 H 0.07 1.31 7.77 -51.93 -0.40 0.91 15 4 O -0.38 -9.30 9.77 -35.23 -0.34 -9.65 15 5 C 0.20 5.35 5.50 36.01 0.20 5.54 15 6 C -0.52 -15.19 9.43 -34.44 -0.32 -15.52 15 7 H 0.07 1.95 7.81 -52.49 -0.41 1.54 15 8 C 0.06 1.66 5.46 -17.82 -0.10 1.56 15 9 N -0.90 -26.80 13.29 55.43 0.74 -26.07 15 10 Si 0.91 21.89 29.54 -169.99 -5.02 16.87 15 11 H -0.27 -6.51 7.11 56.52 0.40 -6.10 15 12 H -0.29 -6.73 7.11 56.52 0.40 -6.33 15 13 H -0.27 -6.49 7.11 56.52 0.40 -6.09 15 14 C -0.15 -2.60 5.48 -36.00 -0.20 -2.80 15 15 C -0.15 -2.29 10.04 -41.21 -0.41 -2.70 15 16 C -0.13 -1.75 10.18 -41.21 -0.42 -2.17 15 17 C -0.24 -3.16 11.23 29.04 0.33 -2.83 15 18 S 0.14 2.23 23.12 -107.50 -2.49 -0.25 15 19 H 0.06 0.81 8.14 -51.93 -0.42 0.39 15 20 H 0.06 1.01 8.14 -51.93 -0.42 0.58 15 21 H 0.07 1.16 7.87 -51.93 -0.41 0.75 15 22 H 0.01 0.22 7.87 -51.93 -0.41 -0.19 15 23 H 0.01 0.19 8.08 -51.93 -0.42 -0.23 15 24 H 0.26 7.41 8.31 -40.82 -0.34 7.07 15 25 H 0.14 1.76 8.06 -52.49 -0.42 1.33 15 26 H 0.13 1.37 8.06 -52.49 -0.42 0.95 15 27 H 0.16 1.62 8.06 -52.49 -0.42 1.20 15 LS Contribution 255.19 15.07 3.85 3.85 Total: -1.00 -30.79 255.19 -7.23 -38.02 By element: Atomic # 1 Polarization: -0.93 SS G_CDS: -3.30 Total: -4.22 kcal Atomic # 6 Polarization: -17.88 SS G_CDS: -0.66 Total: -18.55 kcal Atomic # 7 Polarization: -26.80 SS G_CDS: 0.74 Total: -26.07 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: -0.34 Total: -9.65 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Atomic # 16 Polarization: 2.23 SS G_CDS: -2.49 Total: -0.25 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -30.79 -7.23 -38.02 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205604701.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.928 kcal (2) G-P(sol) polarization free energy of solvation -30.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds