Wall clock time and date at job start Sun Mar 29 2020 21:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.46614 * 2 1 4 4 O 1.42899 * 109.47438 * 120.00276 * 2 1 3 5 5 C 1.42903 * 113.99629 * 270.00038 * 4 2 1 6 6 C 1.50701 * 109.46878 * 179.97438 * 5 4 2 7 7 H 1.07998 * 120.00129 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99861 * 179.97438 * 6 5 4 9 9 N 1.31510 * 119.99913 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 119.99734 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.47294 * 60.00559 * 10 8 6 12 12 H 1.48503 * 109.46954 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.47431 * 300.00157 * 10 8 6 14 14 C 1.50704 * 109.46819 * 240.00548 * 2 1 3 15 15 C 1.33384 * 125.20534 * 99.99829 * 14 2 1 16 16 C 1.38424 * 114.92133 * 179.97438 * 15 14 2 17 17 C 1.33390 * 114.91976 * 359.97438 * 16 15 14 18 18 S 1.75886 * 109.59446 * 359.75563 * 17 16 15 19 19 H 1.08994 * 109.47301 * 59.99785 * 1 2 3 20 20 H 1.08999 * 109.46614 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.46387 * 299.99499 * 1 2 3 22 22 H 1.09002 * 109.47382 * 59.99956 * 5 4 2 23 23 H 1.09001 * 109.46938 * 299.99942 * 5 4 2 24 24 H 0.97002 * 119.99768 * 179.97438 * 9 8 6 25 25 H 1.07994 * 122.53753 * 359.97438 * 15 14 2 26 26 H 1.07997 * 122.54052 * 180.02562 * 16 15 14 27 27 H 1.07999 * 125.20685 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0065 -0.6737 1.1667 5 6 2.2002 0.1829 2.2940 6 6 2.7005 -0.6284 3.4613 7 1 2.8554 -1.6917 3.3530 8 6 2.9614 -0.0131 4.6672 9 7 2.7732 1.2818 4.7990 10 14 3.5821 -1.0187 6.1138 11 1 4.8712 -1.6617 5.7530 12 1 3.7834 -0.1286 7.2854 13 1 2.5849 -2.0653 6.4535 14 6 2.0324 -0.7103 -1.2306 15 6 2.4670 -0.1117 -2.3404 16 6 2.8810 -0.9715 -3.3431 17 6 2.7830 -2.2685 -3.0472 18 16 2.1432 -2.4555 -1.4196 19 1 -0.3633 0.5138 -0.8899 20 1 -0.3632 -1.0277 -0.0005 21 1 -0.3632 0.5138 0.8901 22 1 1.2539 0.6547 2.5588 23 1 2.9321 0.9513 2.0449 24 1 2.9564 1.7147 5.6475 25 1 2.4939 0.9625 -2.4486 26 1 3.2558 -0.6191 -4.2926 27 1 3.0588 -3.0797 -3.7047 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205604701.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:18 Heat of formation + Delta-G solvation = -41.910128 kcal Electronic energy + Delta-G solvation = -11624.732666 eV Core-core repulsion = 9473.396311 eV Total energy + Delta-G solvation = -2151.336354 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 212.061 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.51653 -38.11036 -35.05952 -33.03416 -29.43294 -29.21548 -25.45654 -24.45254 -22.81098 -20.18438 -18.92664 -18.02780 -17.28553 -16.37133 -16.29841 -16.01370 -15.13533 -14.44449 -13.93177 -13.75056 -13.53011 -13.25255 -13.07507 -13.03017 -12.71106 -12.67190 -12.26565 -11.95080 -11.49487 -11.29411 -10.94459 -10.30413 -9.57380 -9.36765 -8.33421 -6.45877 0.10663 0.76432 1.23444 1.39084 1.43676 1.52045 1.86156 2.33656 3.00394 3.08227 3.87622 4.16658 4.22888 4.28262 4.62908 4.65000 4.71981 4.83241 4.94071 5.08259 5.19327 5.24385 5.41408 5.52728 5.61765 5.93989 6.49109 6.77842 7.25615 8.78522 Molecular weight = 212.06amu Principal moments of inertia in cm(-1) A = 0.049555 B = 0.007095 C = 0.006677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.889834 B = 3945.657518 C = 4192.783370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.140 3.860 3 H 0.066 0.934 4 O -0.400 6.400 5 C 0.212 3.788 6 C -0.550 4.550 7 H 0.060 0.940 8 C 0.009 3.991 9 N -0.929 5.929 10 Si 0.981 3.019 11 H -0.266 1.266 12 H -0.274 1.274 13 H -0.265 1.265 14 C -0.189 4.189 15 C -0.139 4.139 16 C -0.138 4.138 17 C -0.217 4.217 18 S 0.091 5.909 19 H 0.089 0.911 20 H 0.058 0.942 21 H 0.053 0.947 22 H -0.008 1.008 23 H -0.014 1.014 24 H 0.271 0.729 25 H 0.154 0.846 26 H 0.171 0.829 27 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.481 -3.964 -14.516 15.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.080 3.920 3 H 0.084 0.916 4 O -0.320 6.320 5 C 0.137 3.863 6 C -0.588 4.588 7 H 0.078 0.922 8 C -0.189 4.189 9 N -0.568 5.568 10 Si 0.804 3.196 11 H -0.191 1.191 12 H -0.198 1.198 13 H -0.190 1.190 14 C -0.307 4.307 15 C -0.170 4.170 16 C -0.168 4.168 17 C -0.352 4.352 18 S 0.354 5.646 19 H 0.108 0.892 20 H 0.077 0.923 21 H 0.072 0.928 22 H 0.010 0.990 23 H 0.003 0.997 24 H 0.080 0.920 25 H 0.171 0.829 26 H 0.188 0.812 27 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -1.773 -5.263 -13.478 14.577 hybrid contribution 0.500 1.371 0.050 1.460 sum -1.273 -3.892 -13.427 14.038 Atomic orbital electron populations 1.22189 0.93846 1.02698 1.02733 1.20458 0.94520 0.94386 0.82609 0.91568 1.87887 1.86451 1.37085 1.20558 1.19863 0.93603 0.89646 0.83160 1.21338 1.45765 0.95638 0.96055 0.92191 1.25923 0.95066 0.96337 1.01619 1.70053 1.48946 1.10715 1.27072 0.85261 0.79120 0.78209 0.76999 1.19107 1.19838 1.19019 1.24513 1.09336 0.97244 0.99587 1.20405 1.01499 1.02359 0.92758 1.20403 1.03091 0.91942 1.01397 1.26083 1.08530 1.01726 0.98875 1.84593 1.63152 1.04783 1.12038 0.89250 0.92308 0.92832 0.99012 0.99672 0.91972 0.82863 0.81168 0.79081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.28 9.51 71.98 0.68 -4.60 15 2 C 0.14 5.49 3.16 29.85 0.09 5.58 15 3 H 0.07 2.57 7.77 -2.39 -0.02 2.56 15 4 O -0.40 -20.09 9.77 -148.98 -1.46 -21.54 15 5 C 0.21 12.08 5.50 71.24 0.39 12.47 15 6 C -0.55 -33.28 9.43 25.60 0.24 -33.04 15 7 H 0.06 3.60 7.81 -2.91 -0.02 3.58 15 8 C 0.01 0.54 5.46 84.66 0.46 1.01 15 9 N -0.93 -56.05 13.29 21.45 0.28 -55.76 15 10 Si 0.98 44.77 29.54 68.60 2.03 46.80 15 11 H -0.27 -11.75 7.11 99.48 0.71 -11.04 15 12 H -0.27 -11.85 7.11 99.48 0.71 -11.14 15 13 H -0.27 -11.67 7.11 99.48 0.71 -10.96 15 14 C -0.19 -6.43 5.48 24.59 0.13 -6.30 15 15 C -0.14 -3.84 10.04 21.22 0.21 -3.62 15 16 C -0.14 -3.12 10.18 21.22 0.22 -2.91 15 17 C -0.22 -5.03 11.23 66.72 0.75 -4.28 15 18 S 0.09 2.85 23.12 -56.49 -1.31 1.55 15 19 H 0.09 2.40 8.14 -2.39 -0.02 2.38 15 20 H 0.06 1.97 8.14 -2.39 -0.02 1.95 15 21 H 0.05 1.90 7.87 -2.39 -0.02 1.89 15 22 H -0.01 -0.46 7.87 -2.39 -0.02 -0.48 15 23 H -0.01 -0.86 8.08 -2.39 -0.02 -0.88 15 24 H 0.27 15.18 8.31 -92.71 -0.77 14.41 15 25 H 0.15 3.58 8.06 -2.91 -0.02 3.56 15 26 H 0.17 2.63 8.06 -2.91 -0.02 2.61 15 27 H 0.19 3.10 8.06 -2.91 -0.02 3.07 15 Total: -1.00 -67.02 255.19 3.88 -63.14 By element: Atomic # 1 Polarization: 0.36 SS G_CDS: 1.14 Total: 1.50 kcal Atomic # 6 Polarization: -38.87 SS G_CDS: 3.19 Total: -35.68 kcal Atomic # 7 Polarization: -56.05 SS G_CDS: 0.28 Total: -55.76 kcal Atomic # 8 Polarization: -20.09 SS G_CDS: -1.46 Total: -21.54 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Atomic # 16 Polarization: 2.85 SS G_CDS: -1.31 Total: 1.55 kcal Total: -67.02 3.88 -63.14 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205604701.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.233 kcal (2) G-P(sol) polarization free energy of solvation -67.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds