Wall clock time and date at job start Sun Mar 29 2020 21:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09000 * 109.47236 * 2 1 4 4 O 1.42902 * 109.47649 * 239.99954 * 2 1 3 5 5 C 1.42903 * 113.99663 * 89.99535 * 4 2 1 6 6 C 1.50704 * 109.46678 * 180.02562 * 5 4 2 7 7 H 1.07996 * 120.00200 * 0.02562 * 6 5 4 8 8 C 1.37878 * 119.99747 * 180.02562 * 6 5 4 9 9 N 1.31507 * 120.00162 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99658 * 180.02562 * 8 6 5 11 11 H 1.48492 * 109.47342 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.46859 * 120.00418 * 10 8 6 13 13 H 1.48501 * 109.46768 * 240.00032 * 10 8 6 14 14 C 1.50702 * 109.47161 * 119.99598 * 2 1 3 15 15 C 1.33390 * 125.20683 * 265.00494 * 14 2 1 16 16 C 1.38422 * 114.91870 * 180.02562 * 15 14 2 17 17 C 1.33383 * 114.92604 * 0.02562 * 16 15 14 18 18 S 1.75889 * 109.59330 * 359.97438 * 17 16 15 19 19 H 1.09000 * 109.47236 * 180.02562 * 1 2 3 20 20 H 1.08992 * 109.47508 * 299.99982 * 1 2 3 21 21 H 1.09008 * 109.46924 * 60.00236 * 1 2 3 22 22 H 1.08989 * 109.47453 * 300.00479 * 5 4 2 23 23 H 1.09005 * 109.46668 * 60.00817 * 5 4 2 24 24 H 0.96998 * 120.00451 * 179.97438 * 9 8 6 25 25 H 1.08000 * 122.53444 * 359.97438 * 15 14 2 26 26 H 1.08006 * 122.53655 * 179.97438 * 16 15 14 27 27 H 1.07996 * 125.20664 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1667 5 6 2.2001 0.1830 -2.2940 6 6 2.7004 -0.6284 -3.4613 7 1 2.8546 -1.6918 -3.3532 8 6 2.9612 -0.0130 -4.6673 9 7 2.7740 1.2820 -4.7987 10 14 3.5807 -1.0189 -6.1143 11 1 3.7064 -2.4422 -5.7102 12 1 2.6204 -0.9078 -7.2416 13 1 4.9072 -0.5061 -6.5418 14 6 2.0323 -0.7103 1.2305 15 6 2.3781 -0.1167 2.3739 16 6 2.8123 -0.9754 3.3689 17 6 2.8197 -2.2664 3.0335 18 16 2.2533 -2.4490 1.3783 19 1 -0.3634 -1.0277 0.0005 20 1 -0.3634 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 1.2539 0.6547 -2.5588 23 1 2.9320 0.9514 -2.0449 24 1 2.9578 1.7151 -5.6470 25 1 2.3242 0.9531 2.5124 26 1 3.1225 -0.6265 4.3428 27 1 3.1257 -3.0758 3.6796 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205604707.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:20 Heat of formation + Delta-G solvation = -23.168759 kcal Electronic energy + Delta-G solvation = -11625.257713 eV Core-core repulsion = 9474.734045 eV Total energy + Delta-G solvation = -2150.523668 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 212.061 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.06873 -36.62671 -32.94007 -31.45270 -28.12423 -27.14332 -24.11062 -22.49642 -21.35475 -18.99601 -17.21689 -16.21298 -15.56574 -15.06300 -14.40387 -14.23435 -13.66609 -12.78765 -12.51355 -12.41670 -12.01646 -11.93802 -11.52451 -11.43539 -10.89227 -10.78716 -10.64245 -10.25768 -10.02245 -9.13712 -8.95977 -8.40698 -8.20339 -8.15581 -6.12998 -4.14639 1.27264 1.95556 2.38944 2.96482 3.28515 3.35092 3.41776 4.32145 4.70035 5.21800 5.23768 5.32462 5.59960 5.70288 5.71663 5.77497 6.05697 6.26942 6.32891 6.49809 6.59468 6.69780 7.06172 7.39259 7.77636 8.11398 8.50420 8.98120 9.50211 10.98536 Molecular weight = 212.06amu Principal moments of inertia in cm(-1) A = 0.049719 B = 0.007126 C = 0.006670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.026733 B = 3928.542369 C = 4196.881443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.149 3.851 3 H 0.070 0.930 4 O -0.385 6.385 5 C 0.195 3.805 6 C -0.514 4.514 7 H 0.067 0.933 8 C 0.057 3.943 9 N -0.898 5.898 10 Si 0.907 3.093 11 H -0.270 1.270 12 H -0.282 1.282 13 H -0.282 1.282 14 C -0.152 4.152 15 C -0.155 4.155 16 C -0.134 4.134 17 C -0.242 4.242 18 S 0.143 5.857 19 H 0.060 0.940 20 H 0.057 0.943 21 H 0.066 0.934 22 H 0.008 0.992 23 H 0.007 0.993 24 H 0.264 0.736 25 H 0.136 0.864 26 H 0.133 0.867 27 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.055 -3.403 13.350 13.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.088 3.912 3 H 0.088 0.912 4 O -0.305 6.305 5 C 0.121 3.879 6 C -0.552 4.552 7 H 0.086 0.914 8 C -0.144 4.144 9 N -0.537 5.537 10 Si 0.734 3.266 11 H -0.194 1.194 12 H -0.208 1.208 13 H -0.208 1.208 14 C -0.270 4.270 15 C -0.185 4.185 16 C -0.165 4.165 17 C -0.377 4.377 18 S 0.407 5.593 19 H 0.079 0.921 20 H 0.076 0.924 21 H 0.085 0.915 22 H 0.026 0.974 23 H 0.025 0.975 24 H 0.073 0.927 25 H 0.154 0.846 26 H 0.151 0.849 27 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -2.217 -4.709 12.246 13.306 hybrid contribution 0.553 1.175 0.185 1.312 sum -1.663 -3.534 12.431 13.030 Atomic orbital electron populations 1.22251 0.95484 1.02595 1.01901 1.20218 0.93027 0.94481 0.83487 0.91212 1.87932 1.85878 1.36816 1.19846 1.20289 0.95282 0.90103 0.82206 1.21081 1.44041 0.95660 0.94446 0.91432 1.24939 0.95584 0.95115 0.98792 1.69964 1.48933 1.09065 1.25786 0.86286 0.78368 0.80303 0.81597 1.19432 1.20826 1.20823 1.24734 1.06058 0.96948 0.99232 1.19998 1.04586 1.01059 0.92896 1.20034 1.03508 0.92473 1.00471 1.25715 1.10861 1.00645 1.00518 1.84519 1.62473 1.05076 1.07208 0.92086 0.92378 0.91491 0.97403 0.97542 0.92676 0.84623 0.84877 0.82431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.73 9.51 37.15 0.35 -2.38 15 2 C 0.15 2.85 3.15 -27.89 -0.09 2.76 15 3 H 0.07 1.31 7.78 -51.93 -0.40 0.91 15 4 O -0.38 -9.29 9.69 -35.23 -0.34 -9.63 15 5 C 0.20 5.32 5.50 36.01 0.20 5.52 15 6 C -0.51 -15.13 9.43 -34.44 -0.32 -15.45 15 7 H 0.07 1.99 7.81 -52.49 -0.41 1.58 15 8 C 0.06 1.64 5.46 -17.82 -0.10 1.54 15 9 N -0.90 -26.78 13.29 55.43 0.74 -26.04 15 10 Si 0.91 21.86 29.54 -169.99 -5.02 16.84 15 11 H -0.27 -6.41 7.11 56.52 0.40 -6.00 15 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 15 13 H -0.28 -6.68 7.11 56.52 0.40 -6.28 15 14 C -0.15 -2.61 5.52 -36.00 -0.20 -2.81 15 15 C -0.16 -2.29 10.05 -41.21 -0.41 -2.71 15 16 C -0.13 -1.75 10.18 -41.21 -0.42 -2.17 15 17 C -0.24 -3.18 11.23 29.04 0.33 -2.86 15 18 S 0.14 2.30 23.03 -107.50 -2.48 -0.18 15 19 H 0.06 1.01 8.14 -51.93 -0.42 0.58 15 20 H 0.06 0.81 8.14 -51.93 -0.42 0.38 15 21 H 0.07 1.15 7.87 -51.92 -0.41 0.74 15 22 H 0.01 0.23 7.87 -51.94 -0.41 -0.18 15 23 H 0.01 0.19 8.09 -51.93 -0.42 -0.23 15 24 H 0.26 7.34 8.31 -40.82 -0.34 7.00 15 25 H 0.14 1.74 8.06 -52.49 -0.42 1.31 15 26 H 0.13 1.37 8.06 -52.48 -0.42 0.94 15 27 H 0.16 1.62 8.06 -52.49 -0.42 1.20 15 LS Contribution 255.08 15.07 3.84 3.84 Total: -1.00 -30.79 255.08 -7.22 -38.01 By element: Atomic # 1 Polarization: -1.00 SS G_CDS: -3.30 Total: -4.30 kcal Atomic # 6 Polarization: -17.89 SS G_CDS: -0.66 Total: -18.55 kcal Atomic # 7 Polarization: -26.78 SS G_CDS: 0.74 Total: -26.04 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: -0.34 Total: -9.63 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Atomic # 16 Polarization: 2.30 SS G_CDS: -2.48 Total: -0.18 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -30.79 -7.22 -38.01 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205604707.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.841 kcal (2) G-P(sol) polarization free energy of solvation -30.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds