Wall clock time and date at job start Sun Mar 29 2020 21:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09000 * 109.47236 * 2 1 4 4 O 1.42902 * 109.47649 * 239.99954 * 2 1 3 5 5 C 1.42903 * 113.99663 * 89.99535 * 4 2 1 6 6 C 1.50704 * 109.46678 * 180.02562 * 5 4 2 7 7 H 1.07996 * 120.00200 * 0.02562 * 6 5 4 8 8 C 1.37878 * 119.99747 * 180.02562 * 6 5 4 9 9 N 1.31507 * 120.00162 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99658 * 180.02562 * 8 6 5 11 11 H 1.48492 * 109.47342 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.46859 * 120.00418 * 10 8 6 13 13 H 1.48501 * 109.46768 * 240.00032 * 10 8 6 14 14 C 1.50702 * 109.47161 * 119.99598 * 2 1 3 15 15 C 1.33390 * 125.20683 * 265.00494 * 14 2 1 16 16 C 1.38422 * 114.91870 * 180.02562 * 15 14 2 17 17 C 1.33383 * 114.92604 * 0.02562 * 16 15 14 18 18 S 1.75889 * 109.59330 * 359.97438 * 17 16 15 19 19 H 1.09000 * 109.47236 * 180.02562 * 1 2 3 20 20 H 1.08992 * 109.47508 * 299.99982 * 1 2 3 21 21 H 1.09008 * 109.46924 * 60.00236 * 1 2 3 22 22 H 1.08989 * 109.47453 * 300.00479 * 5 4 2 23 23 H 1.09005 * 109.46668 * 60.00817 * 5 4 2 24 24 H 0.96998 * 120.00451 * 179.97438 * 9 8 6 25 25 H 1.08000 * 122.53444 * 359.97438 * 15 14 2 26 26 H 1.08006 * 122.53655 * 179.97438 * 16 15 14 27 27 H 1.07996 * 125.20664 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1667 5 6 2.2001 0.1830 -2.2940 6 6 2.7004 -0.6284 -3.4613 7 1 2.8546 -1.6918 -3.3532 8 6 2.9612 -0.0130 -4.6673 9 7 2.7740 1.2820 -4.7987 10 14 3.5807 -1.0189 -6.1143 11 1 3.7064 -2.4422 -5.7102 12 1 2.6204 -0.9078 -7.2416 13 1 4.9072 -0.5061 -6.5418 14 6 2.0323 -0.7103 1.2305 15 6 2.3781 -0.1167 2.3739 16 6 2.8123 -0.9754 3.3689 17 6 2.8197 -2.2664 3.0335 18 16 2.2533 -2.4490 1.3783 19 1 -0.3634 -1.0277 0.0005 20 1 -0.3634 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 1.2539 0.6547 -2.5588 23 1 2.9320 0.9514 -2.0449 24 1 2.9578 1.7151 -5.6470 25 1 2.3242 0.9531 2.5124 26 1 3.1225 -0.6265 4.3428 27 1 3.1257 -3.0758 3.6796 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205604707.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:20 Heat of formation + Delta-G solvation = -41.978390 kcal Electronic energy + Delta-G solvation = -11626.073359 eV Core-core repulsion = 9474.734045 eV Total energy + Delta-G solvation = -2151.339314 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 212.061 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.51650 -38.11254 -35.06177 -33.03335 -29.42597 -29.20919 -25.47025 -24.45591 -22.80693 -20.16514 -18.93764 -18.03337 -17.28841 -16.35812 -16.29031 -16.01433 -15.13767 -14.46118 -13.93978 -13.74333 -13.51689 -13.25271 -13.09775 -13.00823 -12.73185 -12.65895 -12.27653 -11.94485 -11.48218 -11.26716 -10.96074 -10.31209 -9.55859 -9.36827 -8.33907 -6.46114 0.11382 0.76713 1.24515 1.39083 1.40228 1.55060 1.86744 2.33480 3.00011 3.07084 3.87774 4.16773 4.23844 4.28562 4.63086 4.65164 4.72189 4.83504 4.94233 5.08453 5.19841 5.24283 5.41456 5.53093 5.62231 5.93841 6.48985 6.78091 7.25533 8.78496 Molecular weight = 212.06amu Principal moments of inertia in cm(-1) A = 0.049719 B = 0.007126 C = 0.006670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.026733 B = 3928.542369 C = 4196.881443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.140 3.860 3 H 0.066 0.934 4 O -0.400 6.400 5 C 0.212 3.788 6 C -0.548 4.548 7 H 0.059 0.941 8 C 0.009 3.991 9 N -0.929 5.929 10 Si 0.982 3.018 11 H -0.266 1.266 12 H -0.270 1.270 13 H -0.271 1.271 14 C -0.189 4.189 15 C -0.139 4.139 16 C -0.138 4.138 17 C -0.218 4.218 18 S 0.090 5.910 19 H 0.058 0.942 20 H 0.089 0.911 21 H 0.053 0.947 22 H -0.008 1.008 23 H -0.014 1.014 24 H 0.271 0.729 25 H 0.155 0.845 26 H 0.171 0.829 27 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.517 -3.909 14.522 15.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.080 3.920 3 H 0.084 0.916 4 O -0.320 6.320 5 C 0.137 3.863 6 C -0.586 4.586 7 H 0.078 0.922 8 C -0.190 4.190 9 N -0.568 5.568 10 Si 0.805 3.195 11 H -0.190 1.190 12 H -0.195 1.195 13 H -0.196 1.196 14 C -0.307 4.307 15 C -0.170 4.170 16 C -0.168 4.168 17 C -0.353 4.353 18 S 0.353 5.647 19 H 0.077 0.923 20 H 0.108 0.892 21 H 0.072 0.928 22 H 0.010 0.990 23 H 0.003 0.997 24 H 0.080 0.920 25 H 0.172 0.828 26 H 0.189 0.811 27 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -1.690 -5.209 13.442 14.515 hybrid contribution 0.389 1.370 -0.021 1.424 sum -1.301 -3.839 13.421 14.020 Atomic orbital electron populations 1.22180 0.93784 1.02690 1.02747 1.20455 0.94531 0.94383 0.82610 0.91564 1.87883 1.86445 1.37078 1.20578 1.19871 0.93622 0.89647 0.83169 1.21392 1.45570 0.95613 0.96022 0.92225 1.25922 0.95090 0.96338 1.01630 1.70061 1.49056 1.10692 1.26999 0.85156 0.78228 0.78595 0.77564 1.18961 1.19527 1.19607 1.24528 1.09519 0.97324 0.99294 1.20388 1.02073 1.02360 0.92198 1.20404 1.02875 0.92001 1.01505 1.26085 1.08984 1.01872 0.98396 1.84653 1.64040 1.05309 1.10667 0.92337 0.89211 0.92834 0.98981 0.99662 0.91982 0.82750 0.81150 0.79130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.24 9.51 71.98 0.68 -4.56 15 2 C 0.14 5.48 3.15 29.85 0.09 5.57 15 3 H 0.07 2.57 7.78 -2.39 -0.02 2.56 15 4 O -0.40 -20.06 9.69 -148.98 -1.44 -21.50 15 5 C 0.21 12.05 5.50 71.24 0.39 12.44 15 6 C -0.55 -33.15 9.43 25.60 0.24 -32.91 15 7 H 0.06 3.60 7.81 -2.91 -0.02 3.58 15 8 C 0.01 0.52 5.46 84.66 0.46 0.98 15 9 N -0.93 -55.98 13.29 21.45 0.28 -55.70 15 10 Si 0.98 44.81 29.54 68.60 2.03 46.84 15 11 H -0.27 -11.83 7.11 99.48 0.71 -11.12 15 12 H -0.27 -11.76 7.11 99.48 0.71 -11.05 15 13 H -0.27 -11.82 7.11 99.48 0.71 -11.12 15 14 C -0.19 -6.42 5.52 24.59 0.14 -6.29 15 15 C -0.14 -3.80 10.05 21.22 0.21 -3.59 15 16 C -0.14 -3.10 10.18 21.21 0.22 -2.88 15 17 C -0.22 -5.08 11.23 66.72 0.75 -4.33 15 18 S 0.09 2.85 23.03 -56.49 -1.30 1.55 15 19 H 0.06 1.96 8.14 -2.39 -0.02 1.94 15 20 H 0.09 2.39 8.14 -2.39 -0.02 2.37 15 21 H 0.05 1.90 7.87 -2.38 -0.02 1.88 15 22 H -0.01 -0.44 7.87 -2.39 -0.02 -0.46 15 23 H -0.01 -0.85 8.09 -2.38 -0.02 -0.87 15 24 H 0.27 15.08 8.31 -92.71 -0.77 14.31 15 25 H 0.15 3.54 8.06 -2.91 -0.02 3.51 15 26 H 0.17 2.61 8.06 -2.91 -0.02 2.58 15 27 H 0.19 3.12 8.06 -2.91 -0.02 3.10 15 Total: -1.00 -67.08 255.08 3.90 -63.19 By element: Atomic # 1 Polarization: 0.07 SS G_CDS: 1.14 Total: 1.21 kcal Atomic # 6 Polarization: -38.76 SS G_CDS: 3.19 Total: -35.58 kcal Atomic # 7 Polarization: -55.98 SS G_CDS: 0.28 Total: -55.70 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: -1.44 Total: -21.50 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Atomic # 16 Polarization: 2.85 SS G_CDS: -1.30 Total: 1.55 kcal Total: -67.08 3.90 -63.19 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205604707.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.209 kcal (2) G-P(sol) polarization free energy of solvation -67.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds