Wall clock time and date at job start Sun Mar 29 2020 21:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33399 * 126.53689 * 2 1 4 4 O 1.35989 * 125.30441 * 359.97438 * 3 2 1 5 5 C 1.42908 * 116.99621 * 245.63544 * 4 3 2 6 6 C 1.50700 * 109.46745 * 174.94682 * 5 4 3 7 7 H 1.08002 * 120.00403 * 359.97438 * 6 5 4 8 8 C 1.37878 * 119.99885 * 180.02562 * 6 5 4 9 9 N 1.31521 * 119.99924 * 179.72675 * 8 6 5 10 10 Si 1.86800 * 120.00115 * 359.97438 * 8 6 5 11 11 H 1.48507 * 109.46888 * 90.00256 * 10 8 6 12 12 H 1.48501 * 109.47605 * 210.00437 * 10 8 6 13 13 H 1.48502 * 109.47061 * 330.00480 * 10 8 6 14 14 C 1.46962 * 109.38615 * 179.71960 * 3 2 1 15 15 O 1.21507 * 125.04982 * 180.19976 * 14 3 2 16 16 O 1.34592 * 109.89832 * 0.24348 * 14 3 2 17 17 C 1.45502 * 107.68173 * 359.97438 * 16 14 3 18 18 H 1.09001 * 110.12350 * 119.16262 * 17 16 14 19 19 C 1.53002 * 110.12555 * 240.77677 * 17 16 14 20 20 H 1.09001 * 109.47130 * 5.07196 * 1 2 3 21 21 H 1.08994 * 109.47241 * 125.07418 * 1 2 3 22 22 H 1.09003 * 109.47420 * 245.07066 * 1 2 3 23 23 H 1.08995 * 109.46986 * 54.94726 * 5 4 3 24 24 H 1.08999 * 109.47242 * 294.94447 * 5 4 3 25 25 H 0.97001 * 119.99761 * 179.97438 * 9 8 6 26 26 H 1.09000 * 109.47409 * 58.54471 * 19 17 16 27 27 H 1.08996 * 109.47068 * 178.54597 * 19 17 16 28 28 H 1.09001 * 109.46829 * 298.54737 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3012 1.0718 0.0000 4 8 1.8774 2.3640 -0.0005 5 6 2.1748 3.1438 -1.1606 6 6 1.5259 4.4982 -1.0352 7 1 0.9442 4.7392 -0.1577 8 6 1.6739 5.4293 -2.0413 9 7 1.1032 6.6093 -1.9343 10 14 2.6794 5.0122 -3.5593 11 1 1.7951 4.4079 -4.5880 12 1 3.2948 6.2503 -4.1011 13 1 3.7475 4.0467 -3.1958 14 6 3.7054 0.6385 0.0068 15 8 4.6655 1.3832 0.0119 16 8 3.7700 -0.7059 0.0056 17 6 2.4065 -1.2138 -0.0015 18 1 2.2334 -1.8111 -0.8967 19 6 2.1520 -2.0562 1.2502 20 1 -0.3633 1.0236 -0.0909 21 1 -0.3633 -0.5905 -0.8410 22 1 -0.3634 -0.4332 0.9319 23 1 1.7913 2.6378 -2.0465 24 1 3.2543 3.2650 -1.2499 25 1 1.2077 7.2645 -2.6419 26 1 2.3250 -1.4487 2.1385 27 1 1.1209 -2.4096 1.2468 28 1 2.8289 -2.9106 1.2568 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205610793.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:50 Heat of formation + Delta-G solvation = -98.987372 kcal Electronic energy + Delta-G solvation = -14055.361056 eV Core-core repulsion = 11458.796776 eV Total energy + Delta-G solvation = -2596.564280 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.088 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.37908 -37.69741 -37.32599 -33.89774 -32.72495 -30.69165 -28.63671 -27.64692 -24.12397 -22.53432 -20.72209 -20.25709 -17.59123 -16.73209 -16.48167 -16.00412 -15.23657 -14.75662 -14.39351 -13.65324 -13.52184 -13.33974 -12.93833 -12.83222 -12.41875 -12.33149 -12.23278 -11.54245 -11.19288 -11.05582 -10.86902 -10.48290 -10.01239 -9.51701 -9.15648 -8.74357 -8.45594 -6.21259 -4.22649 1.02860 2.88111 3.06562 3.20362 3.28709 3.33393 3.80298 4.13594 4.28807 4.55355 4.78989 4.86242 5.09982 5.28080 5.42434 5.44030 5.59170 5.63573 5.83823 6.08103 6.26925 6.42172 6.68036 6.86401 7.39998 7.52641 7.96386 8.51127 8.86861 9.35333 10.90902 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.043233 B = 0.008704 C = 0.007942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.503912 B = 3216.178255 C = 3524.786283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.150 4.150 3 C 0.004 3.996 4 O -0.290 6.290 5 C 0.171 3.829 6 C -0.525 4.525 7 H 0.087 0.913 8 C 0.079 3.921 9 N -0.889 5.889 10 Si 0.870 3.130 11 H -0.271 1.271 12 H -0.278 1.278 13 H -0.263 1.263 14 C 0.476 3.524 15 O -0.442 6.442 16 O -0.322 6.322 17 C 0.105 3.895 18 H 0.123 0.877 19 C -0.153 4.153 20 H 0.087 0.913 21 H 0.075 0.925 22 H 0.076 0.924 23 H 0.007 0.993 24 H 0.021 0.979 25 H 0.269 0.731 26 H 0.068 0.932 27 H 0.084 0.916 28 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.220 -17.558 2.246 17.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.152 4.152 3 C -0.044 4.044 4 O -0.205 6.205 5 C 0.098 3.902 6 C -0.563 4.563 7 H 0.105 0.895 8 C -0.124 4.124 9 N -0.526 5.526 10 Si 0.696 3.304 11 H -0.197 1.197 12 H -0.203 1.203 13 H -0.188 1.188 14 C 0.318 3.682 15 O -0.327 6.327 16 O -0.239 6.239 17 C 0.049 3.951 18 H 0.141 0.859 19 C -0.210 4.210 20 H 0.106 0.894 21 H 0.094 0.906 22 H 0.095 0.905 23 H 0.025 0.975 24 H 0.039 0.961 25 H 0.079 0.921 26 H 0.087 0.913 27 H 0.102 0.898 28 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.688 -17.037 2.288 17.204 hybrid contribution 0.645 -0.035 -1.003 1.193 sum -0.043 -17.072 1.284 17.120 Atomic orbital electron populations 1.20355 0.87124 1.04886 1.02201 1.23253 0.97821 0.93442 1.00722 1.21006 0.91407 0.88407 1.03606 1.86154 1.75894 1.15940 1.42556 1.21066 0.96835 0.90870 0.81397 1.20735 1.33355 0.94707 1.07491 0.89537 1.24665 0.95188 0.94554 0.97950 1.69853 1.43299 1.05424 1.34050 0.86924 0.81229 0.78862 0.83388 1.19683 1.20335 1.18770 1.21925 0.90799 0.81440 0.74055 1.90906 1.43636 1.54251 1.43869 1.87427 1.29621 1.21823 1.85057 1.22305 0.77151 0.93910 1.01708 0.85926 1.22006 1.03097 0.99877 0.96062 0.89431 0.90611 0.90519 0.97511 0.96115 0.92074 0.91335 0.89771 0.90841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.01 10.40 36.00 0.37 -0.64 15 2 C -0.15 -2.14 5.76 -100.86 -0.58 -2.72 15 3 C 0.00 0.07 6.32 -37.74 -0.24 -0.17 15 4 O -0.29 -6.93 9.87 -19.71 -0.19 -7.12 15 5 C 0.17 4.46 4.85 36.01 0.17 4.64 15 6 C -0.53 -15.55 9.99 -34.44 -0.34 -15.89 15 7 H 0.09 2.76 8.06 -52.49 -0.42 2.34 15 8 C 0.08 2.33 5.47 -17.82 -0.10 2.23 15 9 N -0.89 -27.12 13.96 55.43 0.77 -26.35 15 10 Si 0.87 21.53 27.47 -169.99 -4.67 16.86 15 11 H -0.27 -6.43 7.11 56.52 0.40 -6.03 15 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 13 H -0.26 -6.48 6.54 56.52 0.37 -6.11 15 14 C 0.48 9.49 8.54 34.26 0.29 9.78 15 15 O -0.44 -10.43 17.83 -19.76 -0.35 -10.78 15 16 O -0.32 -5.15 10.92 -39.84 -0.44 -5.58 15 17 C 0.10 1.20 4.30 -27.70 -0.12 1.08 15 18 H 0.12 1.05 8.14 -51.93 -0.42 0.63 15 19 C -0.15 -1.28 9.60 37.16 0.36 -0.92 15 20 H 0.09 1.23 7.83 -51.93 -0.41 0.82 15 21 H 0.08 0.67 8.14 -51.93 -0.42 0.25 15 22 H 0.08 0.68 8.14 -51.93 -0.42 0.25 15 23 H 0.01 0.18 7.57 -51.93 -0.39 -0.22 15 24 H 0.02 0.57 6.99 -51.93 -0.36 0.21 15 25 H 0.27 7.60 8.31 -40.82 -0.34 7.26 15 26 H 0.07 0.65 8.14 -51.93 -0.42 0.22 15 27 H 0.08 0.50 8.14 -51.93 -0.42 0.08 15 28 H 0.07 0.53 8.14 -51.93 -0.42 0.10 15 LS Contribution 253.64 15.07 3.82 3.82 Total: -1.00 -33.76 253.64 -4.53 -38.29 By element: Atomic # 1 Polarization: -3.23 SS G_CDS: -3.29 Total: -6.52 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: -0.18 Total: -2.61 kcal Atomic # 7 Polarization: -27.12 SS G_CDS: 0.77 Total: -26.35 kcal Atomic # 8 Polarization: -22.51 SS G_CDS: -0.98 Total: -23.49 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.67 Total: 16.86 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -33.76 -4.53 -38.29 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205610793.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.700 kcal (2) G-P(sol) polarization free energy of solvation -33.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds