Wall clock time and date at job start Sun Mar 29 2020 21:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33399 * 126.53689 * 2 1 4 4 O 1.35989 * 125.30441 * 359.97438 * 3 2 1 5 5 C 1.42908 * 116.99621 * 245.63544 * 4 3 2 6 6 C 1.50700 * 109.46745 * 174.94682 * 5 4 3 7 7 H 1.08002 * 120.00403 * 359.97438 * 6 5 4 8 8 C 1.37878 * 119.99885 * 180.02562 * 6 5 4 9 9 N 1.31521 * 119.99924 * 179.72675 * 8 6 5 10 10 Si 1.86800 * 120.00115 * 359.97438 * 8 6 5 11 11 H 1.48507 * 109.46888 * 90.00256 * 10 8 6 12 12 H 1.48501 * 109.47605 * 210.00437 * 10 8 6 13 13 H 1.48502 * 109.47061 * 330.00480 * 10 8 6 14 14 C 1.46962 * 109.38615 * 179.71960 * 3 2 1 15 15 O 1.21507 * 125.04982 * 180.19976 * 14 3 2 16 16 O 1.34592 * 109.89832 * 0.24348 * 14 3 2 17 17 C 1.45502 * 107.68173 * 359.97438 * 16 14 3 18 18 H 1.09001 * 110.12350 * 119.16262 * 17 16 14 19 19 C 1.53002 * 110.12555 * 240.77677 * 17 16 14 20 20 H 1.09001 * 109.47130 * 5.07196 * 1 2 3 21 21 H 1.08994 * 109.47241 * 125.07418 * 1 2 3 22 22 H 1.09003 * 109.47420 * 245.07066 * 1 2 3 23 23 H 1.08995 * 109.46986 * 54.94726 * 5 4 3 24 24 H 1.08999 * 109.47242 * 294.94447 * 5 4 3 25 25 H 0.97001 * 119.99761 * 179.97438 * 9 8 6 26 26 H 1.09000 * 109.47409 * 58.54471 * 19 17 16 27 27 H 1.08996 * 109.47068 * 178.54597 * 19 17 16 28 28 H 1.09001 * 109.46829 * 298.54737 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3012 1.0718 0.0000 4 8 1.8774 2.3640 -0.0005 5 6 2.1748 3.1438 -1.1606 6 6 1.5259 4.4982 -1.0352 7 1 0.9442 4.7392 -0.1577 8 6 1.6739 5.4293 -2.0413 9 7 1.1032 6.6093 -1.9343 10 14 2.6794 5.0122 -3.5593 11 1 1.7951 4.4079 -4.5880 12 1 3.2948 6.2503 -4.1011 13 1 3.7475 4.0467 -3.1958 14 6 3.7054 0.6385 0.0068 15 8 4.6655 1.3832 0.0119 16 8 3.7700 -0.7059 0.0056 17 6 2.4065 -1.2138 -0.0015 18 1 2.2334 -1.8111 -0.8967 19 6 2.1520 -2.0562 1.2502 20 1 -0.3633 1.0236 -0.0909 21 1 -0.3633 -0.5905 -0.8410 22 1 -0.3634 -0.4332 0.9319 23 1 1.7913 2.6378 -2.0465 24 1 3.2543 3.2650 -1.2499 25 1 1.2077 7.2645 -2.6419 26 1 2.3250 -1.4487 2.1385 27 1 1.1209 -2.4096 1.2468 28 1 2.8289 -2.9106 1.2568 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205610793.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:50 Heat of formation + Delta-G solvation = -123.440032 kcal Electronic energy + Delta-G solvation = -14056.421403 eV Core-core repulsion = 11458.796776 eV Total energy + Delta-G solvation = -2597.624627 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.088 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.68858 -39.29696 -38.86051 -35.35540 -34.74145 -31.78086 -30.39515 -29.04514 -25.16501 -24.57432 -22.15673 -21.55097 -19.36692 -18.53063 -17.88049 -17.53137 -16.74270 -16.64322 -15.67593 -15.30929 -14.96559 -14.61515 -14.49643 -14.05462 -13.89088 -13.32769 -13.26322 -13.07990 -12.91921 -12.46596 -12.22424 -12.00031 -11.93513 -11.65663 -11.01412 -10.73384 -9.91443 -8.47083 -6.56473 -0.29840 1.24841 1.28890 1.39484 1.42234 1.80958 2.20789 2.59232 2.81487 2.87143 3.22314 3.85699 4.01216 4.22814 4.34713 4.47379 4.72811 4.78391 4.79642 4.83881 4.98248 5.20255 5.23441 5.33198 5.47093 5.81526 6.14279 6.46827 6.66259 7.07038 8.69142 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.043233 B = 0.008704 C = 0.007942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.503912 B = 3216.178255 C = 3524.786283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.073 4.073 3 C -0.086 4.086 4 O -0.313 6.313 5 C 0.185 3.815 6 C -0.548 4.548 7 H 0.042 0.958 8 C 0.027 3.973 9 N -0.930 5.930 10 Si 0.943 3.057 11 H -0.246 1.246 12 H -0.266 1.266 13 H -0.265 1.265 14 C 0.478 3.522 15 O -0.504 6.504 16 O -0.322 6.322 17 C 0.094 3.906 18 H 0.173 0.827 19 C -0.149 4.149 20 H 0.055 0.945 21 H 0.119 0.881 22 H 0.117 0.883 23 H 0.022 0.978 24 H 0.001 0.999 25 H 0.277 0.723 26 H 0.052 0.948 27 H 0.122 0.878 28 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.216 -21.240 1.070 21.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.075 4.075 3 C -0.132 4.132 4 O -0.229 6.229 5 C 0.111 3.889 6 C -0.586 4.586 7 H 0.060 0.940 8 C -0.173 4.173 9 N -0.568 5.568 10 Si 0.764 3.236 11 H -0.169 1.169 12 H -0.190 1.190 13 H -0.190 1.190 14 C 0.323 3.677 15 O -0.394 6.394 16 O -0.238 6.238 17 C 0.040 3.960 18 H 0.190 0.810 19 C -0.206 4.206 20 H 0.074 0.926 21 H 0.137 0.863 22 H 0.136 0.864 23 H 0.040 0.960 24 H 0.019 0.981 25 H 0.087 0.913 26 H 0.072 0.928 27 H 0.140 0.860 28 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.722 -20.768 1.131 20.870 hybrid contribution 0.746 0.876 -0.521 1.263 sum -0.976 -19.891 0.610 19.925 Atomic orbital electron populations 1.20670 0.84498 1.04240 1.05966 1.24082 0.99440 0.92861 0.91130 1.21168 0.92258 0.87709 1.12070 1.86111 1.76341 1.18543 1.41877 1.20622 0.94963 0.89990 0.83306 1.20937 1.33763 0.97349 1.06525 0.93969 1.25627 0.96099 0.94081 1.01502 1.69979 1.44576 1.06606 1.35653 0.85789 0.79590 0.79123 0.79059 1.16931 1.19004 1.18961 1.22031 0.90459 0.82332 0.72856 1.90851 1.45082 1.55936 1.47493 1.87414 1.32565 1.19605 1.84214 1.23092 0.74231 0.92893 1.05813 0.81038 1.22105 1.05970 0.99385 0.93109 0.92601 0.86314 0.86443 0.96011 0.98088 0.91347 0.92850 0.85966 0.88941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.78 10.40 71.24 0.74 -1.04 15 2 C -0.07 -1.85 5.76 -17.43 -0.10 -1.95 15 3 C -0.09 -3.34 6.32 23.46 0.15 -3.19 15 4 O -0.31 -15.66 9.87 -93.42 -0.92 -16.59 15 5 C 0.18 10.03 4.85 71.24 0.35 10.38 15 6 C -0.55 -34.18 9.99 25.60 0.26 -33.92 15 7 H 0.04 2.90 8.06 -2.91 -0.02 2.87 15 8 C 0.03 1.61 5.47 84.65 0.46 2.07 15 9 N -0.93 -58.39 13.96 21.45 0.30 -58.09 15 10 Si 0.94 44.89 27.47 68.60 1.88 46.77 15 11 H -0.25 -10.63 7.11 99.48 0.71 -9.92 15 12 H -0.27 -12.02 7.11 99.48 0.71 -11.31 15 13 H -0.27 -12.66 6.54 99.48 0.65 -12.01 15 14 C 0.48 19.45 8.54 70.11 0.60 20.05 15 15 O -0.50 -25.18 17.83 20.28 0.36 -24.82 15 16 O -0.32 -9.71 10.92 -55.36 -0.60 -10.31 15 17 C 0.09 1.72 4.30 29.97 0.13 1.84 15 18 H 0.17 1.74 8.14 -2.39 -0.02 1.72 15 19 C -0.15 -1.67 9.60 71.98 0.69 -0.98 15 20 H 0.05 1.46 7.83 -2.39 -0.02 1.44 15 21 H 0.12 1.32 8.14 -2.39 -0.02 1.30 15 22 H 0.12 1.36 8.14 -2.39 -0.02 1.34 15 23 H 0.02 1.10 7.57 -2.39 -0.02 1.08 15 24 H 0.00 0.08 6.99 -2.39 -0.02 0.06 15 25 H 0.28 15.89 8.31 -92.71 -0.77 15.12 15 26 H 0.05 0.80 8.14 -2.39 -0.02 0.79 15 27 H 0.12 0.53 8.14 -2.39 -0.02 0.51 15 28 H 0.09 0.80 8.14 -2.39 -0.02 0.78 15 Total: -1.00 -81.40 253.64 5.39 -76.01 By element: Atomic # 1 Polarization: -7.32 SS G_CDS: 1.10 Total: -6.22 kcal Atomic # 6 Polarization: -10.02 SS G_CDS: 3.27 Total: -6.75 kcal Atomic # 7 Polarization: -58.39 SS G_CDS: 0.30 Total: -58.09 kcal Atomic # 8 Polarization: -50.55 SS G_CDS: -1.16 Total: -51.71 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 1.88 Total: 46.77 kcal Total: -81.40 5.39 -76.01 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205610793.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.435 kcal (2) G-P(sol) polarization free energy of solvation -81.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds